4L1UA

Crystal structure of human rtf1 plus3 domain in complex with spt5 ctr phosphopeptide
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
135
structure length
130
Chain Sequence
ITHMVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/peptide
molecule keywords RNA polymerase-associated protein RTF1 homolog
publication title Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin.
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 130
sequence length 135
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2013-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03126 Plus-3 Plus-3 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.260.30 Mainly Beta Beta Complex paz domain paz domain 4l1uA00
4L1PA 3U1UA 4L1UA 2BZEA 2DB9A
chains in the Genus database with same CATH superfamily
4L1PA 1R6ZA 4Z4FA 4Z4IA 1Z26A 4W5QA 4Z4CA 4NH6A 4Z4HA 4W5NA 4NHAA 4NH5A 4NGCA 4W5OA 4Z4EA 1SI2A 5JS2A 1Z25A 5T7BA 5KI6A 1R4KA 1T2RA 4NGGA 4OLBA 4OLAA 4NGBA 3F73A 2QVWA 2XFMA 1U04A 3HJFA 4W5RA 3O3IX 1T2SA 3HM9A 3DLHA 1SI3A 3DLBA 4W5TA 3O7XA 4KRFA 3HVRA 2DB9A 3HO1A 3HK2A 4F3TA 3O7VX 4NGFA 4KREA 2L5DA 3MJ0A 5JS1A 3U1UA 2FFLA 4Z4GA 1VYNA 3QIRA 4L1UA 2BZEA 4NH3A 3DA5A 2L5CA 4NGDA 3O6EX
chains in the Genus database with same CATH topology
4L1PA 1R6ZA 4Z4FA 4Z4IA 1Z26A 4W5QA 4Z4CA 4NH6A 4Z4HA 4W5NA 4NHAA 4NH5A 4NGCA 4W5OA 4Z4EA 1SI2A 5JS2A 1Z25A 5T7BA 5KI6A 1R4KA 1T2RA 4NGGA 4OLBA 4OLAA 4NGBA 3F73A 2QVWA 2XFMA 1U04A 3HJFA 4W5RA 3O3IX 1T2SA 3HM9A 3DLHA 1SI3A 3DLBA 4W5TA 3O7XA 4KRFA 3HVRA 2DB9A 3HO1A 3HK2A 4F3TA 3O7VX 4NGFA 4KREA 2L5DA 3MJ0A 5JS1A 3U1UA 2FFLA 4Z4GA 1VYNA 3QIRA 4L1UA 2BZEA 4NH3A 3DA5A 2L5CA 4NGDA 3O6EX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L1P A;  3U1U A;  4L1U A;  2BZE A;  2DB9 A; 
#chains in the Genus database with same CATH topology
 4L1P A;  1R6Z A;  4Z4F A;  4Z4I A;  1Z26 A;  4W5Q A;  4Z4C A;  4NH6 A;  4Z4H A;  4W5N A;  4NHA A;  4NH5 A;  4NGC A;  4W5O A;  4Z4E A;  1SI2 A;  5JS2 A;  1Z25 A;  5T7B A;  5KI6 A;  1R4K A;  1T2R A;  4NGG A;  4OLB A;  4OLA A;  4NGB A;  3F73 A;  2QVW A;  2XFM A;  1U04 A;  3HJF A;  4W5R A;  3O3I X;  1T2S A;  3HM9 A;  3DLH A;  1SI3 A;  3DLB A;  4W5T A;  3O7X A;  4KRF A;  3HVR A;  2DB9 A;  3HO1 A;  3HK2 A;  4F3T A;  3O7V X;  4NGF A;  4KRE A;  2L5D A;  3MJ0 A;  5JS1 A;  3U1U A;  2FFL A;  4Z4G A;  1VYN A;  3QIR A;  4L1U A;  2BZE A;  4NH3 A;  3DA5 A;  2L5C A;  4NGD A;  3O6E X; 
#chains in the Genus database with same CATH homology
 4L1P A;  1R6Z A;  4Z4F A;  4Z4I A;  1Z26 A;  4W5Q A;  4Z4C A;  4NH6 A;  4Z4H A;  4W5N A;  4NHA A;  4NH5 A;  4NGC A;  4W5O A;  4Z4E A;  1SI2 A;  5JS2 A;  1Z25 A;  5T7B A;  5KI6 A;  1R4K A;  1T2R A;  4NGG A;  4OLB A;  4OLA A;  4NGB A;  3F73 A;  2QVW A;  2XFM A;  1U04 A;  3HJF A;  4W5R A;  3O3I X;  1T2S A;  3HM9 A;  3DLH A;  1SI3 A;  3DLB A;  4W5T A;  3O7X A;  4KRF A;  3HVR A;  2DB9 A;  3HO1 A;  3HK2 A;  4F3T A;  3O7V X;  4NGF A;  4KRE A;  2L5D A;  3MJ0 A;  5JS1 A;  3U1U A;  2FFL A;  4Z4G A;  1VYN A;  3QIR A;  4L1U A;  2BZE A;  4NH3 A;  3DA5 A;  2L5C A;  4NGD A;  3O6E X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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