4LB0A

Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
344
structure length
342
Chain Sequence
MRWKRMMQLLDVHCEGEIGKVAIGGVPKIPGDTVADQLHWLNTDPKGRELRHFLVLEPRGAPIGSVNLLLPAKDSRADAAFIILQPDQAHASSGSNSICVTTALLESGMIEMQEPETVVMLETAAGLVKAVAQCRDGHCDSVTLTMVPSFVHELDAQIATESWGEIRFDLAYGGVFYALVDVRQLGLTIEPGNARRLVEAGMLLKGEINQRIQVVHPDIPAISGVAYVMFRDEDPDGAVRTCTTMWPGRVDRSPCGTGNSANLATLHARGRVKPGDSFLSRSIIGSQFTVGLQGLTTVAGRSAVIPTITGRGFTYGIHQVALDDPLGGGFVLTDVWGAAAET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Uncharacterized protein
publication title Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline
rcsb
source organism Agrobacterium vitis
total genus 86
structure length 342
sequence length 344
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4lb0A02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4lb0A01
1W62A 4JUUA 4LB0A 2GKEA 5M47A 2Q9JA 5IWEA 1U1XA 1XUBA 2OTNA 5HA4A 1T6KA 3G7KA 4K7GB 4JCIA 2H9FA 4IJZA 2PVZA 1U1WA 4J9WA 1YM5A 2GKJA 4Q2HA 1U1VA 1W61A 4JBDA 2PW0A 4J9XA 2Q9HA 4DUNA 2AZPA 3EKMA 4K7XA 3EJXA 1TM0A 3EDNA 3FVEA 1GQZA 1XUAA 4IK0A 4JD7A 4Q60A 1SDJA 1S7JA 5H2GA 1QY9A 1QYAA 5H2YA 1BWZA 4K8LA 1U0KA
chains in the Genus database with same CATH superfamily
2GKEA 2Q9JA 5IWEA 1XUBA 5HA4A 4JCIA 1WPPA 2PVZA 1U1WA 4PY9A 4JBDA 2ZXRA 2EB0A 2PW0A 2ZVFA 2Q9HA 4DUNA 4K7XA 4LS9A 4OA3A 3EDNA 3WQZA 1IR6A 1XUAA 3G98A 5H2GA 4GL6A 1QYAA 3ICJA 4K8LA 4JUUA 1U1XA 1T6KA 4K7GB 4J9WA 2GKJA 2IW4A 4Q2HA 1U1VA 1W61A 3EKMA 3PTJA 1TM0A 3FVEA 2HAWA 2MPBA 2ZXPA 4JD7A 3DEVA 1SDJA 1S7JA 1QY9A 1U0KA 4LB0A 2KPTA 3G7KA 3IGHX 4J9XA 2AZPA 3EJXA 1I74A 1K23A 1GQZA 1WPMA 3PW9A 4Q60A 4LG3A 4RPAA 5H2YA 1W62A 1K20A 5M47A 2OTNA 3PVHA 2H9FA 4IJZA 5ANPA 1YM5A 2YMAA 2ZXOA 2QB6A 2KW7A 2LT2A 2ENXA 2QB8A 4IK0A 3W5WA 2QB7A 1BWZA
chains in the Genus database with same CATH topology
2GKEA 2Q9JA 5IWEA 1XUBA 5HA4A 4JCIA 1WPPA 2PVZA 1U1WA 4PY9A 4JBDA 2ZXRA 2EB0A 2PW0A 2ZVFA 2Q9HA 4DUNA 4K7XA 4LS9A 4OA3A 3EDNA 3WQZA 1IR6A 1XUAA 3G98A 5H2GA 4GL6A 1QYAA 3ICJA 4K8LA 4JUUA 1U1XA 1T6KA 4K7GB 4J9WA 2GKJA 2IW4A 4Q2HA 1U1VA 1W61A 3EKMA 3PTJA 1TM0A 3FVEA 2HAWA 2MPBA 2ZXPA 4JD7A 3DEVA 1SDJA 1S7JA 1QY9A 1U0KA 4LB0A 2KPTA 3G7KA 3IGHX 4J9XA 2AZPA 3EJXA 1I74A 1K23A 1GQZA 1WPMA 3PW9A 4Q60A 4LG3A 4RPAA 5H2YA 1W62A 1K20A 5M47A 2OTNA 3PVHA 2H9FA 4IJZA 5ANPA 1YM5A 2YMAA 2ZXOA 2QB6A 2KW7A 2LT2A 2ENXA 2QB8A 4IK0A 3W5WA 2QB7A 1BWZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W62 A;  4JUU A;  4LB0 A;  2GKE A;  5M47 A;  2Q9J A;  5IWE A;  1U1X A;  1XUB A;  2OTN A;  5HA4 A;  1T6K A;  3G7K A;  4K7G B;  4JCI A;  2H9F A;  4IJZ A;  2PVZ A;  1U1W A;  4J9W A;  1YM5 A;  2GKJ A;  4Q2H A;  1U1V A;  1W61 A;  4JBD A;  2PW0 A;  4J9X A;  2Q9H A;  4DUN A;  2AZP A;  3EKM A;  4K7X A;  3EJX A;  1TM0 A;  3EDN A;  3FVE A;  1GQZ A;  1XUA A;  4IK0 A;  4JD7 A;  4Q60 A;  1SDJ A;  1S7J A;  5H2G A;  1QY9 A;  1QYA A;  5H2Y A;  1BWZ A;  4K8L A;  1U0K A; 
#chains in the Genus database with same CATH topology
 2GKE A;  2Q9J A;  5IWE A;  1XUB A;  5HA4 A;  4JCI A;  1WPP A;  2PVZ A;  1U1W A;  4PY9 A;  4JBD A;  2ZXR A;  2EB0 A;  2PW0 A;  2ZVF A;  2Q9H A;  4DUN A;  4K7X A;  4LS9 A;  4OA3 A;  3EDN A;  3WQZ A;  1IR6 A;  1XUA A;  3G98 A;  5H2G A;  4GL6 A;  1QYA A;  3ICJ A;  4K8L A;  4JUU A;  1U1X A;  1T6K A;  4K7G B;  4J9W A;  2GKJ A;  2IW4 A;  4Q2H A;  1U1V A;  1W61 A;  3EKM A;  3PTJ A;  1TM0 A;  3FVE A;  2HAW A;  2MPB A;  2ZXP A;  4JD7 A;  3DEV A;  1SDJ A;  1S7J A;  1QY9 A;  1U0K A;  4LB0 A;  2KPT A;  3G7K A;  3IGH X;  4J9X A;  2AZP A;  3EJX A;  1I74 A;  1K23 A;  1GQZ A;  1WPM A;  3PW9 A;  4Q60 A;  4LG3 A;  4RPA A;  5H2Y A;  1W62 A;  1K20 A;  5M47 A;  2OTN A;  3PVH A;  2H9F A;  4IJZ A;  5ANP A;  1YM5 A;  2YMA A;  2ZXO A;  2QB6 A;  2KW7 A;  2LT2 A;  2ENX A;  2QB8 A;  4IK0 A;  3W5W A;  2QB7 A;  1BWZ A; 
#chains in the Genus database with same CATH homology
 2GKE A;  2Q9J A;  5IWE A;  1XUB A;  5HA4 A;  4JCI A;  1WPP A;  2PVZ A;  1U1W A;  4PY9 A;  4JBD A;  2ZXR A;  2EB0 A;  2PW0 A;  2ZVF A;  2Q9H A;  4DUN A;  4K7X A;  4LS9 A;  4OA3 A;  3EDN A;  3WQZ A;  1IR6 A;  1XUA A;  3G98 A;  5H2G A;  4GL6 A;  1QYA A;  3ICJ A;  4K8L A;  4JUU A;  1U1X A;  1T6K A;  4K7G B;  4J9W A;  2GKJ A;  2IW4 A;  4Q2H A;  1U1V A;  1W61 A;  3EKM A;  3PTJ A;  1TM0 A;  3FVE A;  2HAW A;  2MPB A;  2ZXP A;  4JD7 A;  3DEV A;  1SDJ A;  1S7J A;  1QY9 A;  1U0K A;  4LB0 A;  2KPT A;  3G7K A;  3IGH X;  4J9X A;  2AZP A;  3EJX A;  1I74 A;  1K23 A;  1GQZ A;  1WPM A;  3PW9 A;  4Q60 A;  4LG3 A;  4RPA A;  5H2Y A;  1W62 A;  1K20 A;  5M47 A;  2OTN A;  3PVH A;  2H9F A;  4IJZ A;  5ANP A;  1YM5 A;  2YMA A;  2ZXO A;  2QB6 A;  2KW7 A;  2LT2 A;  2ENX A;  2QB8 A;  4IK0 A;  3W5W A;  2QB7 A;  1BWZ A; 
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similar chains in the Genus database (?% sequence similarity)
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