4LB0A

Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
344
structure length
342
Chain Sequence
MRWKRMMQLLDVHCEGEIGKVAIGGVPKIPGDTVADQLHWLNTDPKGRELRHFLVLEPRGAPIGSVNLLLPAKDSRADAAFIILQPDQAHASSGSNSICVTTALLESGMIEMQEPETVVMLETAAGLVKAVAQCRDGHCDSVTLTMVPSFVHELDAQIATESWGEIRFDLAYGGVFYALVDVRQLGLTIEPGNARRLVEAGMLLKGEINQRIQVVHPDIPAISGVAYVMFRDEDPDGAVRTCTTMWPGRVDRSPCGTGNSANLATLHARGRVKPGDSFLSRSIIGSQFTVGLQGLTTVAGRSAVIPTITGRGFTYGIHQVALDDPLGGGFVLTDVWGAAAET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uncharacterized protein
publication title Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline
rcsb
source organism Agrobacterium vitis
molecule tags Isomerase
total genus 86
structure length 342
sequence length 344
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4lb0A02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4lb0A01
4J9XA 4JCIA 1TM0A 3EJXA 4Q60A 1T6KA 2OTNA 2PW0A 4JBDA 1GQZA 1QYAA 2GKEA 3EDNA 5IWEA 3FVEA 4DUNA 2Q9JA 1SDJA 4K8LA 3G7KA 4IK0A 1W62A 4J9WA 1S7JA 1YM5A 4Q2HA 5H2YA 1U1WA 5HA4A 2PVZA 4JUUA 1QY9A 1U1VA 1U1XA 3EKMA 2Q9HA 2AZPA 5H2GA 4JD7A 5M47A 1U0KA 4K7XA 1BWZA 2GKJA 4LB0A 1W61A 1XUAA 2H9FA 4K7GB 4IJZA 1XUBA
chains in the Genus database with same CATH superfamily
3DEVA 3EJXA 1GQZA 3EDNA 2GKEA 2ZVFA 3FVEA 1SDJA 1I74A 2EB0A 4LS9A 2KW7A 4J9WA 1U1VA 2YMAA 2QB8A 2AZPA 2QB7A 2GKJA 5H2YA 1XUBA 3W5WA 2LT2A 4Q60A 2PW0A 1QYAA 5IWEA 4K8LA 3PTJA 3PW9A 1S7JA 1YM5A 4Q2HA 4JUUA 1QY9A 2Q9HA 1K20A 2HAWA 5ANPA 2ZXPA 4JD7A 1WPPA 3PVHA 4K7GB 4OA3A 4IJZA 2QB6A 4JCIA 4JBDA 2Q9JA 3G7KA 2ENXA 5HA4A 2PVZA 3G98A 5H2GA 1WPMA 2ZXOA 4K7XA 1BWZA 3ICJA 1XUAA 2H9FA 2KPTA 4PY9A 2ZXRA 4GL6A 4J9XA 1K23A 1TM0A 1T6KA 2OTNA 3IGHX 4DUNA 1IR6A 4IK0A 1W62A 1U1WA 1U1XA 3EKMA 4LG3A 2MPBA 4RPAA 5M47A 3WQZA 1U0KA 2IW4A 4LB0A 1W61A
chains in the Genus database with same CATH topology
3DEVA 3EJXA 1GQZA 3EDNA 2GKEA 2ZVFA 3FVEA 1SDJA 1I74A 2EB0A 4LS9A 2KW7A 4J9WA 1U1VA 2YMAA 2QB8A 2AZPA 2QB7A 2GKJA 5H2YA 1XUBA 3W5WA 2LT2A 4Q60A 2PW0A 1QYAA 5IWEA 4K8LA 3PTJA 3PW9A 1S7JA 1YM5A 4Q2HA 4JUUA 1QY9A 2Q9HA 1K20A 2HAWA 5ANPA 2ZXPA 4JD7A 1WPPA 3PVHA 4K7GB 4OA3A 4IJZA 2QB6A 4JCIA 4JBDA 2Q9JA 3G7KA 2ENXA 5HA4A 2PVZA 3G98A 5H2GA 1WPMA 2ZXOA 4K7XA 1BWZA 3ICJA 1XUAA 2H9FA 2KPTA 4PY9A 2ZXRA 4GL6A 4J9XA 1K23A 1TM0A 1T6KA 2OTNA 3IGHX 4DUNA 1IR6A 4IK0A 1W62A 1U1WA 1U1XA 3EKMA 4LG3A 2MPBA 4RPAA 5M47A 3WQZA 1U0KA 2IW4A 4LB0A 1W61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J9X A;  4JCI A;  1TM0 A;  3EJX A;  4Q60 A;  1T6K A;  2OTN A;  2PW0 A;  4JBD A;  1GQZ A;  1QYA A;  2GKE A;  3EDN A;  5IWE A;  3FVE A;  4DUN A;  2Q9J A;  1SDJ A;  4K8L A;  3G7K A;  4IK0 A;  1W62 A;  4J9W A;  1S7J A;  1YM5 A;  4Q2H A;  5H2Y A;  1U1W A;  5HA4 A;  2PVZ A;  4JUU A;  1QY9 A;  1U1V A;  1U1X A;  3EKM A;  2Q9H A;  2AZP A;  5H2G A;  4JD7 A;  5M47 A;  1U0K A;  4K7X A;  1BWZ A;  2GKJ A;  4LB0 A;  1W61 A;  1XUA A;  2H9F A;  4K7G B;  4IJZ A;  1XUB A; 
#chains in the Genus database with same CATH topology
 3DEV A;  3EJX A;  1GQZ A;  3EDN A;  2GKE A;  2ZVF A;  3FVE A;  1SDJ A;  1I74 A;  2EB0 A;  4LS9 A;  2KW7 A;  4J9W A;  1U1V A;  2YMA A;  2QB8 A;  2AZP A;  2QB7 A;  2GKJ A;  5H2Y A;  1XUB A;  3W5W A;  2LT2 A;  4Q60 A;  2PW0 A;  1QYA A;  5IWE A;  4K8L A;  3PTJ A;  3PW9 A;  1S7J A;  1YM5 A;  4Q2H A;  4JUU A;  1QY9 A;  2Q9H A;  1K20 A;  2HAW A;  5ANP A;  2ZXP A;  4JD7 A;  1WPP A;  3PVH A;  4K7G B;  4OA3 A;  4IJZ A;  2QB6 A;  4JCI A;  4JBD A;  2Q9J A;  3G7K A;  2ENX A;  5HA4 A;  2PVZ A;  3G98 A;  5H2G A;  1WPM A;  2ZXO A;  4K7X A;  1BWZ A;  3ICJ A;  1XUA A;  2H9F A;  2KPT A;  4PY9 A;  2ZXR A;  4GL6 A;  4J9X A;  1K23 A;  1TM0 A;  1T6K A;  2OTN A;  3IGH X;  4DUN A;  1IR6 A;  4IK0 A;  1W62 A;  1U1W A;  1U1X A;  3EKM A;  4LG3 A;  2MPB A;  4RPA A;  5M47 A;  3WQZ A;  1U0K A;  2IW4 A;  4LB0 A;  1W61 A; 
#chains in the Genus database with same CATH homology
 3DEV A;  3EJX A;  1GQZ A;  3EDN A;  2GKE A;  2ZVF A;  3FVE A;  1SDJ A;  1I74 A;  2EB0 A;  4LS9 A;  2KW7 A;  4J9W A;  1U1V A;  2YMA A;  2QB8 A;  2AZP A;  2QB7 A;  2GKJ A;  5H2Y A;  1XUB A;  3W5W A;  2LT2 A;  4Q60 A;  2PW0 A;  1QYA A;  5IWE A;  4K8L A;  3PTJ A;  3PW9 A;  1S7J A;  1YM5 A;  4Q2H A;  4JUU A;  1QY9 A;  2Q9H A;  1K20 A;  2HAW A;  5ANP A;  2ZXP A;  4JD7 A;  1WPP A;  3PVH A;  4K7G B;  4OA3 A;  4IJZ A;  2QB6 A;  4JCI A;  4JBD A;  2Q9J A;  3G7K A;  2ENX A;  5HA4 A;  2PVZ A;  3G98 A;  5H2G A;  1WPM A;  2ZXO A;  4K7X A;  1BWZ A;  3ICJ A;  1XUA A;  2H9F A;  2KPT A;  4PY9 A;  2ZXR A;  4GL6 A;  4J9X A;  1K23 A;  1TM0 A;  1T6K A;  2OTN A;  3IGH X;  4DUN A;  1IR6 A;  4IK0 A;  1W62 A;  1U1W A;  1U1X A;  3EKM A;  4LG3 A;  2MPB A;  4RPA A;  5M47 A;  3WQZ A;  1U0K A;  2IW4 A;  4LB0 A;  1W61 A; 
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similar chains in the Genus database (?% sequence similarity)
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