4LB0A

Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
344
structure length
342
Chain Sequence
MRWKRMMQLLDVHCEGEIGKVAIGGVPKIPGDTVADQLHWLNTDPKGRELRHFLVLEPRGAPIGSVNLLLPAKDSRADAAFIILQPDQAHASSGSNSICVTTALLESGMIEMQEPETVVMLETAAGLVKAVAQCRDGHCDSVTLTMVPSFVHELDAQIATESWGEIRFDLAYGGVFYALVDVRQLGLTIEPGNARRLVEAGMLLKGEINQRIQVVHPDIPAISGVAYVMFRDEDPDGAVRTCTTMWPGRVDRSPCGTGNSANLATLHARGRVKPGDSFLSRSIIGSQFTVGLQGLTTVAGRSAVIPTITGRGFTYGIHQVALDDPLGGGFVLTDVWGAAAET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline
rcsb
source organism Agrobacterium vitis
molecule tags Isomerase
molecule keywords Uncharacterized protein
total genus 86
structure length 342
sequence length 344
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4lb0A02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4lb0A01
1QYAA 1GQZA 4DUNA 5H2YA 1W61A 4LB0A 1XUBA 1QY9A 4K8LA 1SDJA 4IJZA 1T6KA 1U1XA 4JBDA 2OTNA 2Q9JA 3EKMA 1TM0A 1U0KA 1U1WA 2Q9HA 1BWZA 1YM5A 5IWEA 1W62A 5H2GA 4J9XA 4K7XA 4JCIA 2GKJA 3EDNA 3EJXA 3G7KA 2PVZA 4Q60A 4JUUA 5M47A 2H9FA 2PW0A 1XUAA 3FVEA 4JD7A 5HA4A 4K7GB 4J9WA 1S7JA 2GKEA 4IK0A 2AZPA 1U1VA 4Q2HA
chains in the Genus database with same CATH superfamily
2ZVFA 5H2YA 3DEVA 3W5WA 4LB0A 4PY9A 1SDJA 2Q9JA 1YM5A 5IWEA 5ANPA 2ZXRA 2PVZA 4Q60A 2LT2A 4Q2HA 4DUNA 2QB6A 1K23A 3WQZA 4K8LA 1T6KA 1U1XA 4OA3A 3ICJA 5H2GA 2GKJA 3EDNA 3EJXA 2ENXA 2PW0A 2MPBA 1I74A 3PVHA 1S7JA 2ZXOA 2KW7A 2AZPA 2EB0A 1K20A 1QYAA 1W61A 1WPMA 1XUBA 1QY9A 3PTJA 1WPPA 2IW4A 1TM0A 3EKMA 1U0KA 1U1WA 2Q9HA 4GL6A 1W62A 4J9XA 4K7XA 3G98A 3G7KA 4JUUA 1XUAA 3FVEA 4JD7A 2KPTA 4LG3A 5HA4A 4J9WA 2GKEA 1IR6A 1U1VA 1GQZA 2ZXPA 4IJZA 4JBDA 2OTNA 1BWZA 4LS9A 3PW9A 2QB8A 4JCIA 5M47A 2H9FA 2QB7A 2YMAA 4K7GB 2HAWA 4IK0A 4RPAA 3IGHX
chains in the Genus database with same CATH topology
2ZVFA 5H2YA 3DEVA 3W5WA 4LB0A 4PY9A 1SDJA 2Q9JA 1YM5A 5IWEA 5ANPA 2ZXRA 2PVZA 4Q60A 2LT2A 4Q2HA 4DUNA 2QB6A 1K23A 3WQZA 4K8LA 1T6KA 1U1XA 4OA3A 3ICJA 5H2GA 2GKJA 3EDNA 3EJXA 2ENXA 2PW0A 2MPBA 1I74A 3PVHA 1S7JA 2ZXOA 2KW7A 2AZPA 2EB0A 1K20A 1QYAA 1W61A 1WPMA 1XUBA 1QY9A 3PTJA 1WPPA 2IW4A 1TM0A 3EKMA 1U0KA 1U1WA 2Q9HA 4GL6A 1W62A 4J9XA 4K7XA 3G98A 3G7KA 4JUUA 1XUAA 3FVEA 4JD7A 2KPTA 4LG3A 5HA4A 4J9WA 2GKEA 1IR6A 1U1VA 1GQZA 2ZXPA 4IJZA 4JBDA 2OTNA 1BWZA 4LS9A 3PW9A 2QB8A 4JCIA 5M47A 2H9FA 2QB7A 2YMAA 4K7GB 2HAWA 4IK0A 4RPAA 3IGHX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QYA A;  1GQZ A;  4DUN A;  5H2Y A;  1W61 A;  4LB0 A;  1XUB A;  1QY9 A;  4K8L A;  1SDJ A;  4IJZ A;  1T6K A;  1U1X A;  4JBD A;  2OTN A;  2Q9J A;  3EKM A;  1TM0 A;  1U0K A;  1U1W A;  2Q9H A;  1BWZ A;  1YM5 A;  5IWE A;  1W62 A;  5H2G A;  4J9X A;  4K7X A;  4JCI A;  2GKJ A;  3EDN A;  3EJX A;  3G7K A;  2PVZ A;  4Q60 A;  4JUU A;  5M47 A;  2H9F A;  2PW0 A;  1XUA A;  3FVE A;  4JD7 A;  5HA4 A;  4K7G B;  4J9W A;  1S7J A;  2GKE A;  4IK0 A;  2AZP A;  1U1V A;  4Q2H A; 
#chains in the Genus database with same CATH topology
 2ZVF A;  5H2Y A;  3DEV A;  3W5W A;  4LB0 A;  4PY9 A;  1SDJ A;  2Q9J A;  1YM5 A;  5IWE A;  5ANP A;  2ZXR A;  2PVZ A;  4Q60 A;  2LT2 A;  4Q2H A;  4DUN A;  2QB6 A;  1K23 A;  3WQZ A;  4K8L A;  1T6K A;  1U1X A;  4OA3 A;  3ICJ A;  5H2G A;  2GKJ A;  3EDN A;  3EJX A;  2ENX A;  2PW0 A;  2MPB A;  1I74 A;  3PVH A;  1S7J A;  2ZXO A;  2KW7 A;  2AZP A;  2EB0 A;  1K20 A;  1QYA A;  1W61 A;  1WPM A;  1XUB A;  1QY9 A;  3PTJ A;  1WPP A;  2IW4 A;  1TM0 A;  3EKM A;  1U0K A;  1U1W A;  2Q9H A;  4GL6 A;  1W62 A;  4J9X A;  4K7X A;  3G98 A;  3G7K A;  4JUU A;  1XUA A;  3FVE A;  4JD7 A;  2KPT A;  4LG3 A;  5HA4 A;  4J9W A;  2GKE A;  1IR6 A;  1U1V A;  1GQZ A;  2ZXP A;  4IJZ A;  4JBD A;  2OTN A;  1BWZ A;  4LS9 A;  3PW9 A;  2QB8 A;  4JCI A;  5M47 A;  2H9F A;  2QB7 A;  2YMA A;  4K7G B;  2HAW A;  4IK0 A;  4RPA A;  3IGH X; 
#chains in the Genus database with same CATH homology
 2ZVF A;  5H2Y A;  3DEV A;  3W5W A;  4LB0 A;  4PY9 A;  1SDJ A;  2Q9J A;  1YM5 A;  5IWE A;  5ANP A;  2ZXR A;  2PVZ A;  4Q60 A;  2LT2 A;  4Q2H A;  4DUN A;  2QB6 A;  1K23 A;  3WQZ A;  4K8L A;  1T6K A;  1U1X A;  4OA3 A;  3ICJ A;  5H2G A;  2GKJ A;  3EDN A;  3EJX A;  2ENX A;  2PW0 A;  2MPB A;  1I74 A;  3PVH A;  1S7J A;  2ZXO A;  2KW7 A;  2AZP A;  2EB0 A;  1K20 A;  1QYA A;  1W61 A;  1WPM A;  1XUB A;  1QY9 A;  3PTJ A;  1WPP A;  2IW4 A;  1TM0 A;  3EKM A;  1U0K A;  1U1W A;  2Q9H A;  4GL6 A;  1W62 A;  4J9X A;  4K7X A;  3G98 A;  3G7K A;  4JUU A;  1XUA A;  3FVE A;  4JD7 A;  2KPT A;  4LG3 A;  5HA4 A;  4J9W A;  2GKE A;  1IR6 A;  1U1V A;  1GQZ A;  2ZXP A;  4IJZ A;  4JBD A;  2OTN A;  1BWZ A;  4LS9 A;  3PW9 A;  2QB8 A;  4JCI A;  5M47 A;  2H9F A;  2QB7 A;  2YMA A;  4K7G B;  2HAW A;  4IK0 A;  4RPA A;  3IGH X; 
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similar chains in the Genus database (?% sequence similarity)
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