4LB0A

Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
344
structure length
342
Chain Sequence
MRWKRMMQLLDVHCEGEIGKVAIGGVPKIPGDTVADQLHWLNTDPKGRELRHFLVLEPRGAPIGSVNLLLPAKDSRADAAFIILQPDQAHASSGSNSICVTTALLESGMIEMQEPETVVMLETAAGLVKAVAQCRDGHCDSVTLTMVPSFVHELDAQIATESWGEIRFDLAYGGVFYALVDVRQLGLTIEPGNARRLVEAGMLLKGEINQRIQVVHPDIPAISGVAYVMFRDEDPDGAVRTCTTMWPGRVDRSPCGTGNSANLATLHARGRVKPGDSFLSRSIIGSQFTVGLQGLTTVAGRSAVIPTITGRGFTYGIHQVALDDPLGGGFVLTDVWGAAAET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline
rcsb
source organism Agrobacterium vitis
molecule tags Isomerase
molecule keywords Uncharacterized protein
total genus 86
structure length 342
sequence length 344
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2013-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4lb0A02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4lb0A01
1BWZA 2PW0A 4IJZA 5H2GA 1GQZA 4K7GB 1U0KA 1T6KA 1W61A 4K7XA 4J9XA 2GKJA 2PVZA 2AZPA 4JUUA 4JD7A 2OTNA 3EDNA 5M47A 2H9FA 3G7KA 2GKEA 4JCIA 1YM5A 1W62A 1QYAA 1QY9A 4LB0A 4Q2HA 4DUNA 5HA4A 3EKMA 5IWEA 4K8LA 5H2YA 1U1XA 1TM0A 3FVEA 4JBDA 1U1WA 1XUBA 4J9WA 4Q60A 2Q9HA 2Q9JA 1SDJA 4IK0A 1XUAA 3EJXA 1S7JA 1U1VA
chains in the Genus database with same CATH superfamily
4PY9A 5H2GA 1U0KA 1T6KA 1W61A 4GL6A 2AZPA 5M47A 3G7KA 2KPTA 4LS9A 3EKMA 5IWEA 3IGHX 2ZXOA 3FVEA 1U1WA 4J9WA 1SDJA 2ZVFA 4RPAA 1GQZA 1K20A 2ENXA 2GKJA 4JUUA 4JD7A 3ICJA 2GKEA 4JCIA 3PW9A 1QYAA 1WPPA 2LT2A 1QY9A 4LB0A 4K8LA 5H2YA 5ANPA 3DEVA 3PTJA 4Q60A 2Q9JA 1IR6A 2ZXRA 2MPBA 3EJXA 1S7JA 1U1VA 1BWZA 4IJZA 2QB7A 1WPMA 2ZXPA 4K7GB 1I74A 3PVHA 2OTNA 4OA3A 2H9FA 1YM5A 2HAWA 5HA4A 1U1XA 1TM0A 1XUBA 3WQZA 4IK0A 1XUAA 2PW0A 3G98A 3W5WA 4K7XA 2KW7A 4J9XA 2PVZA 3EDNA 1W62A 1K23A 2QB6A 4Q2HA 4DUNA 2EB0A 4LG3A 2IW4A 2QB8A 4JBDA 2Q9HA 2YMAA
chains in the Genus database with same CATH topology
4PY9A 5H2GA 1U0KA 1T6KA 1W61A 4GL6A 2AZPA 5M47A 3G7KA 2KPTA 4LS9A 3EKMA 5IWEA 3IGHX 2ZXOA 3FVEA 1U1WA 4J9WA 1SDJA 2ZVFA 4RPAA 1GQZA 1K20A 2ENXA 2GKJA 4JUUA 4JD7A 3ICJA 2GKEA 4JCIA 3PW9A 1QYAA 1WPPA 2LT2A 1QY9A 4LB0A 4K8LA 5H2YA 5ANPA 3DEVA 3PTJA 4Q60A 2Q9JA 1IR6A 2ZXRA 2MPBA 3EJXA 1S7JA 1U1VA 1BWZA 4IJZA 2QB7A 1WPMA 2ZXPA 4K7GB 1I74A 3PVHA 2OTNA 4OA3A 2H9FA 1YM5A 2HAWA 5HA4A 1U1XA 1TM0A 1XUBA 3WQZA 4IK0A 1XUAA 2PW0A 3G98A 3W5WA 4K7XA 2KW7A 4J9XA 2PVZA 3EDNA 1W62A 1K23A 2QB6A 4Q2HA 4DUNA 2EB0A 4LG3A 2IW4A 2QB8A 4JBDA 2Q9HA 2YMAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BWZ A;  2PW0 A;  4IJZ A;  5H2G A;  1GQZ A;  4K7G B;  1U0K A;  1T6K A;  1W61 A;  4K7X A;  4J9X A;  2GKJ A;  2PVZ A;  2AZP A;  4JUU A;  4JD7 A;  2OTN A;  3EDN A;  5M47 A;  2H9F A;  3G7K A;  2GKE A;  4JCI A;  1YM5 A;  1W62 A;  1QYA A;  1QY9 A;  4LB0 A;  4Q2H A;  4DUN A;  5HA4 A;  3EKM A;  5IWE A;  4K8L A;  5H2Y A;  1U1X A;  1TM0 A;  3FVE A;  4JBD A;  1U1W A;  1XUB A;  4J9W A;  4Q60 A;  2Q9H A;  2Q9J A;  1SDJ A;  4IK0 A;  1XUA A;  3EJX A;  1S7J A;  1U1V A; 
#chains in the Genus database with same CATH topology
 4PY9 A;  5H2G A;  1U0K A;  1T6K A;  1W61 A;  4GL6 A;  2AZP A;  5M47 A;  3G7K A;  2KPT A;  4LS9 A;  3EKM A;  5IWE A;  3IGH X;  2ZXO A;  3FVE A;  1U1W A;  4J9W A;  1SDJ A;  2ZVF A;  4RPA A;  1GQZ A;  1K20 A;  2ENX A;  2GKJ A;  4JUU A;  4JD7 A;  3ICJ A;  2GKE A;  4JCI A;  3PW9 A;  1QYA A;  1WPP A;  2LT2 A;  1QY9 A;  4LB0 A;  4K8L A;  5H2Y A;  5ANP A;  3DEV A;  3PTJ A;  4Q60 A;  2Q9J A;  1IR6 A;  2ZXR A;  2MPB A;  3EJX A;  1S7J A;  1U1V A;  1BWZ A;  4IJZ A;  2QB7 A;  1WPM A;  2ZXP A;  4K7G B;  1I74 A;  3PVH A;  2OTN A;  4OA3 A;  2H9F A;  1YM5 A;  2HAW A;  5HA4 A;  1U1X A;  1TM0 A;  1XUB A;  3WQZ A;  4IK0 A;  1XUA A;  2PW0 A;  3G98 A;  3W5W A;  4K7X A;  2KW7 A;  4J9X A;  2PVZ A;  3EDN A;  1W62 A;  1K23 A;  2QB6 A;  4Q2H A;  4DUN A;  2EB0 A;  4LG3 A;  2IW4 A;  2QB8 A;  4JBD A;  2Q9H A;  2YMA A; 
#chains in the Genus database with same CATH homology
 4PY9 A;  5H2G A;  1U0K A;  1T6K A;  1W61 A;  4GL6 A;  2AZP A;  5M47 A;  3G7K A;  2KPT A;  4LS9 A;  3EKM A;  5IWE A;  3IGH X;  2ZXO A;  3FVE A;  1U1W A;  4J9W A;  1SDJ A;  2ZVF A;  4RPA A;  1GQZ A;  1K20 A;  2ENX A;  2GKJ A;  4JUU A;  4JD7 A;  3ICJ A;  2GKE A;  4JCI A;  3PW9 A;  1QYA A;  1WPP A;  2LT2 A;  1QY9 A;  4LB0 A;  4K8L A;  5H2Y A;  5ANP A;  3DEV A;  3PTJ A;  4Q60 A;  2Q9J A;  1IR6 A;  2ZXR A;  2MPB A;  3EJX A;  1S7J A;  1U1V A;  1BWZ A;  4IJZ A;  2QB7 A;  1WPM A;  2ZXP A;  4K7G B;  1I74 A;  3PVH A;  2OTN A;  4OA3 A;  2H9F A;  1YM5 A;  2HAW A;  5HA4 A;  1U1X A;  1TM0 A;  1XUB A;  3WQZ A;  4IK0 A;  1XUA A;  2PW0 A;  3G98 A;  3W5W A;  4K7X A;  2KW7 A;  4J9X A;  2PVZ A;  3EDN A;  1W62 A;  1K23 A;  2QB6 A;  4Q2H A;  4DUN A;  2EB0 A;  4LG3 A;  2IW4 A;  2QB8 A;  4JBD A;  2Q9H A;  2YMA A; 
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similar chains in the Genus database (?% sequence similarity)
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