4LCNA

Crytsal structure of ne0047 in complex with 2'-deoxy-guanosine
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
189
structure length
189
Chain Sequence
MNDALHIGLPPFLVQANNEPRVLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACNGVIYNARC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Cytidine and deoxycytidylate deaminase zinc-binding region
publication title Structural basis of the substrate specificity of cytidine deaminase superfamily Guanine deaminase
pubmed doi rcsb
source organism Nitrosomonas europaea
total genus 63
structure length 189
sequence length 189
chains with identical sequence B
ec nomenclature ec 3.5.-.-:
pdb deposition date 2013-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 4lcnA01
4OWPB 2ZNRA 4OCNB 4O8YB 4LD2A 3DMOA 4ZFRA 4OCLB 1ZABA 4QFTA 3OCQA 2G6VA 1Z3AA 4I43B 4ZD5A 4PQTA 5DCAJ 2B3ZA 4K1RA 2D30A 1R5TA 2ZNVA 4LCNA 2P87A 1ALNA 1AF2A 4MSJA 1UWZA 4ILGC 3ZPGA 2O7PA 4O8YA 2OG4A 1UAQA 4LCOA 4OCLA 1JTKA 1OI0A 5M52C 4P9CA 4P9DA 2O95A 4MS7A 4JXEA 2FR6A 4E0QA 2PW9A 1P6OA 2Z3HA 2NX8A 2QLCA 2D5NA 1YSDA 1CTUA 2Z3JA 4EG2A 1UX0A 2FR5A 2HVWA 1WN5A 3EX8A 4MSDA 4F7OA 5M59B 2A8NA 2Z3GA 1CTTA 4MSQA 5GAOA 3RZUA 4OCMA 4MSMA 1UX1A 2KKSA 2Z3IA 3SBGA 4OCMB 4D10F 2KCQA 2O3KA 4KITC 3G8QA 1VQ2A 1YSBA 3ZEFB 1OX7A 1WWRA 3R2NA 4WIFA 2RPZA 4LCPA 4LD4A 1R5XA 1RB7A 2G84A 3DH1A 4LC5A 2NYTA 4NQLA 3E1UA 4O8XB 1TIYA 4BGDC 4ZFTA 1WN6A 3MPZA 2B3JA 1MQ0A 2P8RA 4P9EA 3ZPCA 4G3MA 2O96A 4HRQA 5C2OA 4ZD4A 4HRWA 3RZVA 4WIGA 3OJ6A 3IJFX 2HXVA 2W4LA 4OWPA 2OBCA 2HVVA 1WKQA 4OCNA 4F3WA 4O8XA 5CW6A 3B8FA
chains in the Genus database with same CATH superfamily
4OWPB 1P4RA 2ZNRA 4OCNB 4O8YB 4LD2A 1THZA 3DMOA 4ZFRA 4OCLB 1ZABA 4QFTA 3OCQA 2G6VA 1Z3AA 1ZCZA 4J6EA 4I43B 4ZD5A 4PQTA 5DCAJ 2B3ZA 2B1IA 4K1RA 1M9NA 2D30A 1R5TA 3ZZMA 2ZNVA 4LCNA 2P87A 1ALNA 1AF2A 4MSJA 1UWZA 4ILGC 3ZPGA 2O7PA 4O8YA 2OG4A 1UAQA 4A1OA 1PKXA 4LCOA 4OCLA 1JTKA 1OI0A 5M52C 1PL0A 4P9CA 2O95A 4P9DA 4MS7A 4JXEA 2FR6A 2IU0A 2PW9A 4E0QA 1P6OA 1OZ0A 2Z3HA 2NX8A 2QLCA 2D5NA 4EHIA 3BH1A 1YSDA 1CTUA 2Z3JA 4GGMX 4EG2A 1UX0A 2FR5A 2HVWA 1WN5A 3EX8A 4MSDA 4F7OA 5M59B 2A8NA 2Z3GA 1CTTA 4MSQA 5GAOA 3RZUA 4OCMA 4MSMA 1UX1A 2KKSA 2Z3IA 3SBGA 3VX8A 4OCMB 4D10F 2KCQA 1VK9A 2O3KA 4KITC 2IU3A 3G8QA 1VQ2A 1YSBA 3ZEFB 1OX7A 1WWRA 3R2NA 4WIFA 2RPZA 4LCPA 4LD4A 1R5XA 1RB7A 2G84A 3DH1A 4LC5A 2B1GA 2NYTA 4NQLA 3E1UA 4O8XB 1TIYA 4BGDC 4ZFTA 1WN6A 3MPZA 2B3JA 1MQ0A 2P8RA 4P9EA 3ZPCA 4G3MA 1G8MA 2O96A 4HRQA 5C2OA 4ZD4A 4HRWA 3RZVA 4WIGA 3OJ6A 3IJFX 2HXVA 2W4LA 4OWPA 2OBCA 2HVVA 1WKQA 4OCNA 4F3WA 4O8XA 5CW6A 3B8FA
chains in the Genus database with same CATH topology
4OWPB 2ZNRA 4OCNB 4O8YB 4LD2A 3DMOA 4ZFRA 4OCLB 1ZABA 4QFTA 3OCQA 2G6VA 1Z3AA 4I43B 4ZD5A 4PQTA 5DCAJ 2B3ZA 4K1RA 2D30A 1R5TA 2ZNVA 4LCNA 2P87A 1ALNA 1AF2A 4MSJA 1UWZA 4ILGC 3ZPGA 2O7PA 4O8YA 2OG4A 1UAQA 4LCOA 4OCLA 1JTKA 1OI0A 5M52C 4P9CA 4P9DA 2O95A 4MS7A 4JXEA 2FR6A 4E0QA 2PW9A 1P6OA 2Z3HA 2NX8A 2QLCA 2D5NA 1YSDA 1CTUA 2Z3JA 4EG2A 1UX0A 2FR5A 2HVWA 1WN5A 3EX8A 4MSDA 4F7OA 5M59B 2A8NA 2Z3GA 1CTTA 4MSQA 5GAOA 3RZUA 4OCMA 4MSMA 1UX1A 2KKSA 2Z3IA 3SBGA 4OCMB 4D10F 2KCQA 2O3KA 4KITC 3G8QA 1VQ2A 1YSBA 3ZEFB 1OX7A 1WWRA 3R2NA 4WIFA 2RPZA 4LCPA 4LD4A 1R5XA 1RB7A 2G84A 3DH1A 4LC5A 2NYTA 4NQLA 3E1UA 4O8XB 1TIYA 4BGDC 4ZFTA 1WN6A 3MPZA 2B3JA 1MQ0A 2P8RA 4P9EA 3ZPCA 4G3MA 2O96A 4HRQA 5C2OA 4ZD4A 4HRWA 3RZVA 4WIGA 3OJ6A 3IJFX 2HXVA 2W4LA 4OWPA 2OBCA 2HVVA 1WKQA 4OCNA 4F3WA 4O8XA 5CW6A 3B8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OWP B;  2ZNR A;  4OCN B;  4O8Y B;  4LD2 A;  3DMO A;  4ZFR A;  4OCL B;  1ZAB A;  4QFT A;  3OCQ A;  2G6V A;  1Z3A A;  4I43 B;  4ZD5 A;  4PQT A;  5DCA J;  2B3Z A;  4K1R A;  2D30 A;  1R5T A;  2ZNV A;  4LCN A;  2P87 A;  1ALN A;  1AF2 A;  4MSJ A;  1UWZ A;  4ILG C;  3ZPG A;  2O7P A;  4O8Y A;  2OG4 A;  1UAQ A;  4LCO A;  4OCL A;  1JTK A;  1OI0 A;  5M52 C;  4P9C A;  4P9D A;  2O95 A;  4MS7 A;  4JXE A;  2FR6 A;  4E0Q A;  2PW9 A;  1P6O A;  2Z3H A;  2NX8 A;  2QLC A;  2D5N A;  1YSD A;  1CTU A;  2Z3J A;  4EG2 A;  1UX0 A;  2FR5 A;  2HVW A;  1WN5 A;  3EX8 A;  4MSD A;  4F7O A;  5M59 B;  2A8N A;  2Z3G A;  1CTT A;  4MSQ A;  5GAO A;  3RZU A;  4OCM A;  4MSM A;  1UX1 A;  2KKS A;  2Z3I A;  3SBG A;  4OCM B;  4D10 F;  2KCQ A;  2O3K A;  4KIT C;  3G8Q A;  1VQ2 A;  1YSB A;  3ZEF B;  1OX7 A;  1WWR A;  3R2N A;  4WIF A;  2RPZ A;  4LCP A;  4LD4 A;  1R5X A;  1RB7 A;  2G84 A;  3DH1 A;  4LC5 A;  2NYT A;  4NQL A;  3E1U A;  4O8X B;  1TIY A;  4BGD C;  4ZFT A;  1WN6 A;  3MPZ A;  2B3J A;  1MQ0 A;  2P8R A;  4P9E A;  3ZPC A;  4G3M A;  2O96 A;  4HRQ A;  5C2O A;  4ZD4 A;  4HRW A;  3RZV A;  4WIG A;  3OJ6 A;  3IJF X;  2HXV A;  2W4L A;  4OWP A;  2OBC A;  2HVV A;  1WKQ A;  4OCN A;  4F3W A;  4O8X A;  5CW6 A;  3B8F A; 
#chains in the Genus database with same CATH topology
 4OWP B;  1P4R A;  2ZNR A;  4OCN B;  4O8Y B;  4LD2 A;  1THZ A;  3DMO A;  4ZFR A;  4OCL B;  1ZAB A;  4QFT A;  3OCQ A;  2G6V A;  1Z3A A;  1ZCZ A;  4J6E A;  4I43 B;  4ZD5 A;  4PQT A;  5DCA J;  2B3Z A;  2B1I A;  4K1R A;  1M9N A;  2D30 A;  1R5T A;  3ZZM A;  2ZNV A;  4LCN A;  2P87 A;  1ALN A;  1AF2 A;  4MSJ A;  1UWZ A;  4ILG C;  3ZPG A;  2O7P A;  4O8Y A;  2OG4 A;  1UAQ A;  4A1O A;  1PKX A;  4LCO A;  4OCL A;  1JTK A;  1OI0 A;  5M52 C;  1PL0 A;  4P9C A;  2O95 A;  4P9D A;  4MS7 A;  4JXE A;  2FR6 A;  2IU0 A;  2PW9 A;  4E0Q A;  1P6O A;  1OZ0 A;  2Z3H A;  2NX8 A;  2QLC A;  2D5N A;  4EHI A;  3BH1 A;  1YSD A;  1CTU A;  2Z3J A;  4GGM X;  4EG2 A;  1UX0 A;  2FR5 A;  2HVW A;  1WN5 A;  3EX8 A;  4MSD A;  4F7O A;  5M59 B;  2A8N A;  2Z3G A;  1CTT A;  4MSQ A;  5GAO A;  3RZU A;  4OCM A;  4MSM A;  1UX1 A;  2KKS A;  2Z3I A;  3SBG A;  3VX8 A;  4OCM B;  4D10 F;  2KCQ A;  1VK9 A;  2O3K A;  4KIT C;  2IU3 A;  3G8Q A;  1VQ2 A;  1YSB A;  3ZEF B;  1OX7 A;  1WWR A;  3R2N A;  4WIF A;  2RPZ A;  4LCP A;  4LD4 A;  1R5X A;  1RB7 A;  2G84 A;  3DH1 A;  4LC5 A;  2B1G A;  2NYT A;  4NQL A;  3E1U A;  4O8X B;  1TIY A;  4BGD C;  4ZFT A;  1WN6 A;  3MPZ A;  2B3J A;  1MQ0 A;  2P8R A;  4P9E A;  3ZPC A;  4G3M A;  1G8M A;  2O96 A;  4HRQ A;  5C2O A;  4ZD4 A;  4HRW A;  3RZV A;  4WIG A;  3OJ6 A;  3IJF X;  2HXV A;  2W4L A;  4OWP A;  2OBC A;  2HVV A;  1WKQ A;  4OCN A;  4F3W A;  4O8X A;  5CW6 A;  3B8F A; 
#chains in the Genus database with same CATH homology
 4OWP B;  2ZNR A;  4OCN B;  4O8Y B;  4LD2 A;  3DMO A;  4ZFR A;  4OCL B;  1ZAB A;  4QFT A;  3OCQ A;  2G6V A;  1Z3A A;  4I43 B;  4ZD5 A;  4PQT A;  5DCA J;  2B3Z A;  4K1R A;  2D30 A;  1R5T A;  2ZNV A;  4LCN A;  2P87 A;  1ALN A;  1AF2 A;  4MSJ A;  1UWZ A;  4ILG C;  3ZPG A;  2O7P A;  4O8Y A;  2OG4 A;  1UAQ A;  4LCO A;  4OCL A;  1JTK A;  1OI0 A;  5M52 C;  4P9C A;  4P9D A;  2O95 A;  4MS7 A;  4JXE A;  2FR6 A;  4E0Q A;  2PW9 A;  1P6O A;  2Z3H A;  2NX8 A;  2QLC A;  2D5N A;  1YSD A;  1CTU A;  2Z3J A;  4EG2 A;  1UX0 A;  2FR5 A;  2HVW A;  1WN5 A;  3EX8 A;  4MSD A;  4F7O A;  5M59 B;  2A8N A;  2Z3G A;  1CTT A;  4MSQ A;  5GAO A;  3RZU A;  4OCM A;  4MSM A;  1UX1 A;  2KKS A;  2Z3I A;  3SBG A;  4OCM B;  4D10 F;  2KCQ A;  2O3K A;  4KIT C;  3G8Q A;  1VQ2 A;  1YSB A;  3ZEF B;  1OX7 A;  1WWR A;  3R2N A;  4WIF A;  2RPZ A;  4LCP A;  4LD4 A;  1R5X A;  1RB7 A;  2G84 A;  3DH1 A;  4LC5 A;  2NYT A;  4NQL A;  3E1U A;  4O8X B;  1TIY A;  4BGD C;  4ZFT A;  1WN6 A;  3MPZ A;  2B3J A;  1MQ0 A;  2P8R A;  4P9E A;  3ZPC A;  4G3M A;  2O96 A;  4HRQ A;  5C2O A;  4ZD4 A;  4HRW A;  3RZV A;  4WIG A;  3OJ6 A;  3IJF X;  2HXV A;  2W4L A;  4OWP A;  2OBC A;  2HVV A;  1WKQ A;  4OCN A;  4F3W A;  4O8X A;  5CW6 A;  3B8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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