4LD4A

Crystal structure of ne0047 in complex with cytosine
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
189
structure length
189
Chain Sequence
MNDALHIGLPPFLVQANNEPRVLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACNGVIYNARC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Cytidine and deoxycytidylate deaminase zinc-binding region
publication title Structural basis of the substrate specificity of cytidine deaminase superfamily Guanine deaminase
pubmed doi rcsb
source organism Nitrosomonas europaea
total genus 54
structure length 189
sequence length 189
chains with identical sequence B
ec nomenclature ec 3.5.-.-:
pdb deposition date 2013-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 4ld4A01
4OCLB 2D30A 4OCLA 4MSMA 1WN6A 2QLCA 1YSBA 2O96A 1CTTA 1UX1A 2D5NA 2Z3GA 2FR5A 4BGDC 5GAOA 2HVVA 4G3MA 1VQ2A 3EX8A 2ZNRA 2NYTA 4LCOA 1ALNA 2OBCA 4LCNA 4E0QA 3G8QA 4WIFA 3SBGA 5C2OA 4MS7A 4ZD4A 1Z3AA 4ILGC 1MQ0A 2G84A 1AF2A 4LCPA 2P87A 1UX0A 4ZFTA 3RZUA 4NQLA 3B8FA 3MPZA 2OG4A 5DCAJ 5M59B 2KKSA 3DMOA 1YSDA 4ZFRA 4P9CA 4MSDA 4OCMB 2FR6A 2KCQA 4LD2A 1JTKA 4OCMA 4O8YB 4F3WA 1ZABA 2RPZA 1OX7A 2G6VA 5M52C 1WN5A 4MSQA 1R5TA 4EG2A 1UAQA 3ZPCA 3OCQA 1OI0A 1RB7A 4OCNB 4LC5A 2B3ZA 2Z3HA 4I43B 3R2NA 4WIGA 4OCNA 2P8RA 4HRWA 1TIYA 4QFTA 2O3KA 4PQTA 4HRQA 3DH1A 4OWPB 3RZVA 4ZD5A 2ZNVA 4OWPA 3IJFX 4MSJA 4JXEA 4F7OA 4O8XB 4O8YA 3E1UA 3ZEFB 1WWRA 4O8XA 4D10F 1UWZA 3OJ6A 2Z3JA 4K1RA 2PW9A 1WKQA 2HXVA 2Z3IA 3ZPGA 4P9DA 2O7PA 1CTUA 1R5XA 2NX8A 4LD4A 4KITC 5CW6A 2B3JA 2W4LA 4P9EA 2A8NA 1P6OA 2HVWA 2O95A
chains in the Genus database with same CATH superfamily
4OCLB 1M9NA 4GGMX 2D30A 4OCLA 4A1OA 4MSMA 4J6EA 1WN6A 2QLCA 1YSBA 2O96A 1CTTA 1P4RA 1UX1A 2D5NA 1THZA 1OZ0A 2Z3GA 2FR5A 4BGDC 5GAOA 2HVVA 4G3MA 1VQ2A 3EX8A 2ZNRA 2NYTA 4LCOA 1ALNA 2OBCA 4LCNA 4E0QA 3G8QA 4WIFA 3SBGA 3VX8A 3BH1A 1ZCZA 5C2OA 4MS7A 4ZD4A 1Z3AA 1PKXA 2B1IA 4ILGC 1MQ0A 2G84A 1AF2A 4LCPA 2P87A 1UX0A 4ZFTA 3RZUA 4NQLA 3B8FA 3MPZA 2OG4A 5DCAJ 5M59B 2KKSA 3DMOA 1YSDA 4ZFRA 4P9CA 4MSDA 4OCMB 2FR6A 2KCQA 4LD2A 1JTKA 4OCMA 1PL0A 4O8YB 4F3WA 1ZABA 2RPZA 1OX7A 2G6VA 5M52C 1WN5A 2B1GA 4MSQA 1R5TA 4EG2A 1UAQA 3ZPCA 3OCQA 1OI0A 1RB7A 4OCNB 4LC5A 2B3ZA 2Z3HA 4I43B 3R2NA 4WIGA 4OCNA 2P8RA 4HRWA 4EHIA 1TIYA 4QFTA 2O3KA 4PQTA 4HRQA 3DH1A 4OWPB 3RZVA 4ZD5A 2ZNVA 4OWPA 3IJFX 4MSJA 4JXEA 4F7OA 4O8XB 4O8YA 3E1UA 3ZEFB 1WWRA 4O8XA 2IU0A 1UWZA 3OJ6A 4D10F 2Z3JA 4K1RA 2IU3A 2PW9A 1WKQA 2HXVA 2Z3IA 3ZPGA 4P9DA 2O7PA 1CTUA 1R5XA 2NX8A 4LD4A 4KITC 5CW6A 2B3JA 1VK9A 2W4LA 4P9EA 3ZZMA 2A8NA 1P6OA 2HVWA 1G8MA 2O95A
chains in the Genus database with same CATH topology
4OCLB 2D30A 4OCLA 4MSMA 1WN6A 2QLCA 1YSBA 2O96A 1CTTA 1UX1A 2D5NA 2Z3GA 2FR5A 4BGDC 5GAOA 2HVVA 4G3MA 1VQ2A 3EX8A 2ZNRA 2NYTA 4LCOA 1ALNA 2OBCA 4LCNA 4E0QA 3G8QA 4WIFA 3SBGA 5C2OA 4MS7A 4ZD4A 1Z3AA 4ILGC 1MQ0A 2G84A 1AF2A 4LCPA 2P87A 1UX0A 4ZFTA 3RZUA 4NQLA 3B8FA 3MPZA 2OG4A 5DCAJ 5M59B 2KKSA 3DMOA 1YSDA 4ZFRA 4P9CA 4MSDA 4OCMB 2FR6A 2KCQA 4LD2A 1JTKA 4OCMA 4O8YB 4F3WA 1ZABA 2RPZA 1OX7A 2G6VA 5M52C 1WN5A 4MSQA 1R5TA 4EG2A 1UAQA 3ZPCA 3OCQA 1OI0A 1RB7A 4OCNB 4LC5A 2B3ZA 2Z3HA 4I43B 3R2NA 4WIGA 4OCNA 2P8RA 4HRWA 1TIYA 4QFTA 2O3KA 4PQTA 4HRQA 3DH1A 4OWPB 3RZVA 4ZD5A 2ZNVA 4OWPA 3IJFX 4MSJA 4JXEA 4F7OA 4O8XB 4O8YA 3E1UA 3ZEFB 1WWRA 4O8XA 4D10F 1UWZA 3OJ6A 2Z3JA 4K1RA 2PW9A 1WKQA 2HXVA 2Z3IA 3ZPGA 4P9DA 2O7PA 1CTUA 1R5XA 2NX8A 4LD4A 4KITC 5CW6A 2B3JA 2W4LA 4P9EA 2A8NA 1P6OA 2HVWA 2O95A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OCL B;  2D30 A;  4OCL A;  4MSM A;  1WN6 A;  2QLC A;  1YSB A;  2O96 A;  1CTT A;  1UX1 A;  2D5N A;  2Z3G A;  2FR5 A;  4BGD C;  5GAO A;  2HVV A;  4G3M A;  1VQ2 A;  3EX8 A;  2ZNR A;  2NYT A;  4LCO A;  1ALN A;  2OBC A;  4LCN A;  4E0Q A;  3G8Q A;  4WIF A;  3SBG A;  5C2O A;  4MS7 A;  4ZD4 A;  1Z3A A;  4ILG C;  1MQ0 A;  2G84 A;  1AF2 A;  4LCP A;  2P87 A;  1UX0 A;  4ZFT A;  3RZU A;  4NQL A;  3B8F A;  3MPZ A;  2OG4 A;  5DCA J;  5M59 B;  2KKS A;  3DMO A;  1YSD A;  4ZFR A;  4P9C A;  4MSD A;  4OCM B;  2FR6 A;  2KCQ A;  4LD2 A;  1JTK A;  4OCM A;  4O8Y B;  4F3W A;  1ZAB A;  2RPZ A;  1OX7 A;  2G6V A;  5M52 C;  1WN5 A;  4MSQ A;  1R5T A;  4EG2 A;  1UAQ A;  3ZPC A;  3OCQ A;  1OI0 A;  1RB7 A;  4OCN B;  4LC5 A;  2B3Z A;  2Z3H A;  4I43 B;  3R2N A;  4WIG A;  4OCN A;  2P8R A;  4HRW A;  1TIY A;  4QFT A;  2O3K A;  4PQT A;  4HRQ A;  3DH1 A;  4OWP B;  3RZV A;  4ZD5 A;  2ZNV A;  4OWP A;  3IJF X;  4MSJ A;  4JXE A;  4F7O A;  4O8X B;  4O8Y A;  3E1U A;  3ZEF B;  1WWR A;  4O8X A;  4D10 F;  1UWZ A;  3OJ6 A;  2Z3J A;  4K1R A;  2PW9 A;  1WKQ A;  2HXV A;  2Z3I A;  3ZPG A;  4P9D A;  2O7P A;  1CTU A;  1R5X A;  2NX8 A;  4LD4 A;  4KIT C;  5CW6 A;  2B3J A;  2W4L A;  4P9E A;  2A8N A;  1P6O A;  2HVW A;  2O95 A; 
#chains in the Genus database with same CATH topology
 4OCL B;  1M9N A;  4GGM X;  2D30 A;  4OCL A;  4A1O A;  4MSM A;  4J6E A;  1WN6 A;  2QLC A;  1YSB A;  2O96 A;  1CTT A;  1P4R A;  1UX1 A;  2D5N A;  1THZ A;  1OZ0 A;  2Z3G A;  2FR5 A;  4BGD C;  5GAO A;  2HVV A;  4G3M A;  1VQ2 A;  3EX8 A;  2ZNR A;  2NYT A;  4LCO A;  1ALN A;  2OBC A;  4LCN A;  4E0Q A;  3G8Q A;  4WIF A;  3SBG A;  3VX8 A;  3BH1 A;  1ZCZ A;  5C2O A;  4MS7 A;  4ZD4 A;  1Z3A A;  1PKX A;  2B1I A;  4ILG C;  1MQ0 A;  2G84 A;  1AF2 A;  4LCP A;  2P87 A;  1UX0 A;  4ZFT A;  3RZU A;  4NQL A;  3B8F A;  3MPZ A;  2OG4 A;  5DCA J;  5M59 B;  2KKS A;  3DMO A;  1YSD A;  4ZFR A;  4P9C A;  4MSD A;  4OCM B;  2FR6 A;  2KCQ A;  4LD2 A;  1JTK A;  4OCM A;  1PL0 A;  4O8Y B;  4F3W A;  1ZAB A;  2RPZ A;  1OX7 A;  2G6V A;  5M52 C;  1WN5 A;  2B1G A;  4MSQ A;  1R5T A;  4EG2 A;  1UAQ A;  3ZPC A;  3OCQ A;  1OI0 A;  1RB7 A;  4OCN B;  4LC5 A;  2B3Z A;  2Z3H A;  4I43 B;  3R2N A;  4WIG A;  4OCN A;  2P8R A;  4HRW A;  4EHI A;  1TIY A;  4QFT A;  2O3K A;  4PQT A;  4HRQ A;  3DH1 A;  4OWP B;  3RZV A;  4ZD5 A;  2ZNV A;  4OWP A;  3IJF X;  4MSJ A;  4JXE A;  4F7O A;  4O8X B;  4O8Y A;  3E1U A;  3ZEF B;  1WWR A;  4O8X A;  2IU0 A;  1UWZ A;  3OJ6 A;  4D10 F;  2Z3J A;  4K1R A;  2IU3 A;  2PW9 A;  1WKQ A;  2HXV A;  2Z3I A;  3ZPG A;  4P9D A;  2O7P A;  1CTU A;  1R5X A;  2NX8 A;  4LD4 A;  4KIT C;  5CW6 A;  2B3J A;  1VK9 A;  2W4L A;  4P9E A;  3ZZM A;  2A8N A;  1P6O A;  2HVW A;  1G8M A;  2O95 A; 
#chains in the Genus database with same CATH homology
 4OCL B;  2D30 A;  4OCL A;  4MSM A;  1WN6 A;  2QLC A;  1YSB A;  2O96 A;  1CTT A;  1UX1 A;  2D5N A;  2Z3G A;  2FR5 A;  4BGD C;  5GAO A;  2HVV A;  4G3M A;  1VQ2 A;  3EX8 A;  2ZNR A;  2NYT A;  4LCO A;  1ALN A;  2OBC A;  4LCN A;  4E0Q A;  3G8Q A;  4WIF A;  3SBG A;  5C2O A;  4MS7 A;  4ZD4 A;  1Z3A A;  4ILG C;  1MQ0 A;  2G84 A;  1AF2 A;  4LCP A;  2P87 A;  1UX0 A;  4ZFT A;  3RZU A;  4NQL A;  3B8F A;  3MPZ A;  2OG4 A;  5DCA J;  5M59 B;  2KKS A;  3DMO A;  1YSD A;  4ZFR A;  4P9C A;  4MSD A;  4OCM B;  2FR6 A;  2KCQ A;  4LD2 A;  1JTK A;  4OCM A;  4O8Y B;  4F3W A;  1ZAB A;  2RPZ A;  1OX7 A;  2G6V A;  5M52 C;  1WN5 A;  4MSQ A;  1R5T A;  4EG2 A;  1UAQ A;  3ZPC A;  3OCQ A;  1OI0 A;  1RB7 A;  4OCN B;  4LC5 A;  2B3Z A;  2Z3H A;  4I43 B;  3R2N A;  4WIG A;  4OCN A;  2P8R A;  4HRW A;  1TIY A;  4QFT A;  2O3K A;  4PQT A;  4HRQ A;  3DH1 A;  4OWP B;  3RZV A;  4ZD5 A;  2ZNV A;  4OWP A;  3IJF X;  4MSJ A;  4JXE A;  4F7O A;  4O8X B;  4O8Y A;  3E1U A;  3ZEF B;  1WWR A;  4O8X A;  4D10 F;  1UWZ A;  3OJ6 A;  2Z3J A;  4K1R A;  2PW9 A;  1WKQ A;  2HXV A;  2Z3I A;  3ZPG A;  4P9D A;  2O7P A;  1CTU A;  1R5X A;  2NX8 A;  4LD4 A;  4KIT C;  5CW6 A;  2B3J A;  2W4L A;  4P9E A;  2A8N A;  1P6O A;  2HVW A;  2O95 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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