4LD8A

Crystal structure of dimeric sudan virus vp40
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
265
structure length
235
Chain Sequence
MDTPSNSMRPVADDNIDHTSHTPNGVASAFILEATVNVISGPKVLMKQIPIWLPLGIADQKTYSFDSTTAAIMLASYTITHFGKANNPLVRVNRLGQGIPDHPLRLLRMGNQAFLQEFVLPPVQLPQYFTFDLTALKLVTQPLPAATWTDLRPGLSFHPKLRPVLLPGKDKIQTIVNLMQDFKIVPIDPAKSIIGIEVPELLVHKLTGKKKNGQPIIPVLLPKYIGPGDLTMVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Matrix protein VP40
publication title Structural Rearrangement of Ebola Virus VP40 Begets Multiple Functions in the Virus Life Cycle.
pubmed doi rcsb
source organism Sudan ebolavirus
total genus 48
structure length 235
sequence length 265
ec nomenclature
pdb deposition date 2013-06-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.510.10 Mainly Beta Sandwich EV matrix protein fold EV matrix protein 4ld8A02
2.70.20.20 Mainly Beta Distorted Sandwich Topoisomerase I; domain 3 Topoisomerase I; domain 3 4ld8A01
5B0VA 1H2DA 1H2CA 4LD8A 1ES6A 3TCQA 4LDMA 4LDDA 4LDBA
chains in the Genus database with same CATH superfamily
4DDVA 4G1GA 4CGYA 4G1LA 1I7DA 1CY1A 1ES6A 4V23A 4CHTA 4LDBA 3PX7A 2O19A 1D6MA 4DDWA 5D5HA 4RULA 1CYYA 1CY0A 3PWTA 1MW9X 4HIWA 5B0VA 4LP7A 2O59A 2GAJA 4LDMA 1CY7A 1CY9A 4HI5A 4D4TA 1GL9B 2VQPA 4DDTA 2O5CA 4LD8A 2YKDA 1GKUB 4G1OA 3F1JA 4HIYA 4LDDA 1ECLA 1CY4A 2GAIA 1MW8X 4DDUA 2O5EA 1H2DA 1H2CA 4HIUA 2O54A 3TCQA 1CY6A 4HI6A 1CY2A 1CY8A 4HITA
chains in the Genus database with same CATH topology
4G1GA 4G1LA 1ES6A 4V23A 4LDBA 4HIWA 5B0VA 4LP7A 4LDMA 4HI5A 4D4TA 2VQPA 4LD8A 2YKDA 4G1OA 3F1JA 4HIYA 4LDDA 1H2DA 1H2CA 4HIUA 3TCQA 4HI6A 4HITA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5B0V A;  1H2D A;  1H2C A;  4LD8 A;  1ES6 A;  3TCQ A;  4LDM A;  4LDD A;  4LDB A; 
#chains in the Genus database with same CATH topology
 4DDV A;  4G1G A;  4CGY A;  4G1L A;  1I7D A;  1CY1 A;  1ES6 A;  4V23 A;  4CHT A;  4LDB A;  3PX7 A;  2O19 A;  1D6M A;  4DDW A;  5D5H A;  4RUL A;  1CYY A;  1CY0 A;  3PWT A;  1MW9 X;  4HIW A;  5B0V A;  4LP7 A;  2O59 A;  2GAJ A;  4LDM A;  1CY7 A;  1CY9 A;  4HI5 A;  4D4T A;  1GL9 B;  2VQP A;  4DDT A;  2O5C A;  4LD8 A;  2YKD A;  1GKU B;  4G1O A;  3F1J A;  4HIY A;  4LDD A;  1ECL A;  1CY4 A;  2GAI A;  1MW8 X;  4DDU A;  2O5E A;  1H2D A;  1H2C A;  4HIU A;  2O54 A;  3TCQ A;  1CY6 A;  4HI6 A;  1CY2 A;  1CY8 A;  4HIT A; 
#chains in the Genus database with same CATH homology
 4G1G A;  4G1L A;  1ES6 A;  4V23 A;  4LDB A;  4HIW A;  5B0V A;  4LP7 A;  4LDM A;  4HI5 A;  4D4T A;  2VQP A;  4LD8 A;  2YKD A;  4G1O A;  3F1J A;  4HIY A;  4LDD A;  1H2D A;  1H2C A;  4HIU A;  3TCQ A;  4HI6 A;  4HIT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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