4LEPA

Structural insights into substrate recognition in proton dependent oligopeptide transporters
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
484
structure length
455
Chain Sequence
SKTHSFMTVSLIELWERFGYYGMQALIVYFMVQRLGFDDSRANLVWSACAALIYVSPAIGGWVGDKILGTKRTMLLGAGILSVGYALMTVPTENTWFMFSALGVIVVGNGLFKPNAGNLVRKIYEGDDSKIDSAFTIYYMAVNVGSTFSMLLTPWIKDYVNAQYGNEFGWHAAFAVCCVGILVGLGNYALMHKSLANYGVNKKSLAIVLALAALSVVASAIILEYEDVARVFVYAAGVAVLGIFFHLIRPSERAGLIAALILTVQTVFFFIFYQQMSTSLALFALRNVDWDFWTWSPAQFQALNPIWIMVLSPVLAWSYSWDFSIAAKFALGFAVVAIGFFIYGFAGQFAVNGKTSSWVMIWGYASYSLGELLVSGLGLAMIARYGFMMGAYFVASGISQYLGGVVANFASVPQDLVDPLQTLPVYTNLFNKLGVAAVVCTIIALAVLPLMRRLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein, tranport protein
molecule keywords Proton:oligopeptide symporter POT family
publication title Structural insights into substrate recognition in proton-dependent oligopeptide transporters.
pubmed doi rcsb
source organism Shewanella oneidensis
total genus 173
structure length 455
sequence length 484
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4lepA00
3O7QA 1PV7A 4OAAA 4XNIA 1PW4A 5D59A 5EQGA 4D2CA 4Q65A 4XNJA 4ZWBA 4OH3A 4TPGA 4IU9A 4IKYA 4ZW9A 4GBYA 4JA3A 4LDSA 4U4TA 4YB9D 5D58A 2XUTA 5EQIA 2CFPA 2CFQA 4J05A 4IKVA 4ZWCA 4TPJA 5A2NA 4IKZA 4QIQA 4PYPA 3WDOA 4LEPA 4D2BA 4TPHA 3O7PA 5GXBA 4YBQA 5D6KA 2V8NA 5A2OA 4W6VA 4UVMA 5EQHA 4IU8A 4GBZA 4D2DA 2Y5YA 4JR9A 5C65A 4GC0A 4IKXA 4IKWA 4U4WA 4APSA 4JREA 4U4VA 1PV6A 4ZYRA
chains in the Genus database with same CATH superfamily
4Q65A 4XNJA 5IYDD 1Y6KL 3I4MD 4BBRD 3OG6A 5KNHI 1P9MB 1CD9A 2L3OA 3DI3A 2B8UA 1RW5A 4LRLA 1PY2A 3AYHA 4JR9A 4IKWA 4DKFA 1HWHA 3WCYI 4A3ID 5D59A 4XNIA 4NEJA 1BP3A 3INKC 3NCEA 3NCFA 1Z7CA 4TPGA 3PIWA 3QAZA 2B8ZA 2LMSA 4A3JD 4QIQA 2JA7D 2B8YA 1HWGA 5A2OA 3PO3D 3QWRB 4NN7A 1PV6A 4YQXA 1CSGA 4OH3A 4YB9D 4D2BA 4GC0A 4NKQC 2KZ1A 3HOXD 1V7NV 1Y1WD 3SE3B 4O9HA 4J4LC 4ZW9A 4IKVA 3G9VB 4A3KD 1IL6A 1V7MV 1ILKA 2JA5D 3BPOA 1HZIA 1M4AA 1INRA 4GS7A 4ZYRA 3S9DA 4DKDA 2B5IA 3D48P 3PIVA 3DI2A 5IYBD 4BY7D 1NBPA 1M49A 5D6KA 4NEMA 4MHLA 4O6KA 4EXPA 5FLMD 4A3ED 1YKBA 2O27A 3LB6A 1BGDA 2JA6D 3H3VE 4DKEA 2XQBA 5LQBA 5FHXA 1HIKA 1EERA 4PYPA 2O6IA 1Y6ML 2D9QA 2INTA 4BY1D 2B63D 3HHRA 2ILKA 5C3ED 2R92D 4GRWA 3H0GD 1EMRA 5EQGA 4YDYI 4IU9A 2B8XA 5C44D 1ALUA 4NI7A 1CN4C 1EXZA 2B90A 1M48A 1FG9A 4Z5RD 3EJJA 3NCBA 1HIJA 3BPLA 3SE4B 1B5LA 4APSA 1WU3I 4A3MD 4WRLB 1ITFA 2D48A 5FUCA 4A3CD 4GBYA 1M4CA 1HUWA 1Y1VD 3HOUD 2Q14A 4A3FD 1Y14A 5D58A 4J05A 5L6YC 4IKZA 4I77Z 3O7PA 3BESL 5GXBA 1BCNA 1HGUA 1I1RB 3UX9A 4A3DD 1PW6A 2Q7NB 2IL6A 3DLQI 4NN6A 1PV7A 1ITMA 3FKID 2B91A 3QB1A 3NCCA 3UF5A 3HOZD 1M4BA 2PSMA 1GA3A 1BGEA 2XUTA 2H24A 1HULA 5A2NA 4TPJA 4NI9A 1BGCA 1PGRA 2GMFA 2OQPA 4YUEC 3UEZE 4U4VA 2Z3QA 4FA8E 1ITLA 1AX8A 1EKUA 3B5KA 4PS4A 1A7MA 3L5XA 3LB6B 3MZGA 1LK3A 1RHGA 5C65A 4A3LD 3IRHA 4ZS7A 4JA3A 2HYMB 4A93D 3Q1SI 1CYLA 2CFPA 2E9WC 4CNIC 2ERJD 1GNCA 1IJZA 1BBNA 3QT2C 4YBQA 3DUHC 1CNT1 4EXNA 1IARA 1LQSL 2L3YA 4YPGC 1PW4A 3HOYD 3HMXB 3TGXB 5EQIA 1EVSA 5IP9D 1RFBA 3N06A 2VUMD 1JLIA 1F45B 1AXIA 4BXXD 4U4WA 1QVNA 2LAGA 1F6FA 3L5WI 2R93D 1M4RA 2O26A 3DGCL 5C7XA 5IP7D 4ZWCA 5C4XD 1M47A 3NPZA 4LEPA 5TS9A 5E4EA 2Z3RA 4W6VA 4BBSD 4IU8A 3I4ND 4D2DA 2Y5YA 1A22A 4IKXA 4JREA 1IK0A 4OAAA 3HHCA 1D9CA 3EW3A 3PO2D 4LDSA 3HOVD 1ETEA 3OG4A 2CFQA 1FYHA 1BUYA 3N0PA 4TPHA 2R7ZD 3D87A 4UVMA 5D70A 1LKIA 2Q98A 3D85C 1KF9A 3O7QA 3HOWD 4D2CA 1IRLA 1WCMD 4ZWBA 1Z92A 1VLKA 4DOHA 4RS1A 5IYCD 1ITIA 3G6DA 3WDOA 3UF2A 1PVHB 4A3GD 2V8NA 5EQHA 3VA2A 4GBZA 5D72A 3OQ3A 1N1FA 3QB7A 1D9GA 2C35A 1J7VL 5D71A 1AU1A 4DKCA 4IKYA 5D22A 4ZF7A 4U4TA 1SCFA 4NN5A 3BPNA 2JA8D 1Y6NL 4X51A 4A3BD 2CYKA 1RCBA 5D28B
chains in the Genus database with same CATH topology
3O7QA 1PV7A 4OAAA 4XNIA 1PW4A 5D59A 5EQGA 4D2CA 4Q65A 4XNJA 4ZWBA 4OH3A 4TPGA 4IU9A 4IKYA 4ZW9A 4GBYA 4JA3A 4LDSA 4U4TA 4YB9D 5D58A 2XUTA 5EQIA 2CFPA 2CFQA 4J05A 4IKVA 4ZWCA 4TPJA 5A2NA 4IKZA 4QIQA 4PYPA 3WDOA 4LEPA 4D2BA 4TPHA 3O7PA 5GXBA 4YBQA 5D6KA 2V8NA 5A2OA 4W6VA 4UVMA 5EQHA 4IU8A 4GBZA 4D2DA 2Y5YA 4JR9A 5C65A 4GC0A 4IKXA 4IKWA 4U4WA 4APSA 4JREA 4U4VA 1PV6A 4ZYRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O7Q A;  1PV7 A;  4OAA A;  4XNI A;  1PW4 A;  5D59 A;  5EQG A;  4D2C A;  4Q65 A;  4XNJ A;  4ZWB A;  4OH3 A;  4TPG A;  4IU9 A;  4IKY A;  4ZW9 A;  4GBY A;  4JA3 A;  4LDS A;  4U4T A;  4YB9 D;  5D58 A;  2XUT A;  5EQI A;  2CFP A;  2CFQ A;  4J05 A;  4IKV A;  4ZWC A;  4TPJ A;  5A2N A;  4IKZ A;  4QIQ A;  4PYP A;  3WDO A;  4LEP A;  4D2B A;  4TPH A;  3O7P A;  5GXB A;  4YBQ A;  5D6K A;  2V8N A;  5A2O A;  4W6V A;  4UVM A;  5EQH A;  4IU8 A;  4GBZ A;  4D2D A;  2Y5Y A;  4JR9 A;  5C65 A;  4GC0 A;  4IKX A;  4IKW A;  4U4W A;  4APS A;  4JRE A;  4U4V A;  1PV6 A;  4ZYR A; 
#chains in the Genus database with same CATH topology
 4Q65 A;  4XNJ A;  5IYD D;  1Y6K L;  3I4M D;  4BBR D;  3OG6 A;  5KNH I;  1P9M B;  1CD9 A;  2L3O A;  3DI3 A;  2B8U A;  1RW5 A;  4LRL A;  1PY2 A;  3AYH A;  4JR9 A;  4IKW A;  4DKF A;  1HWH A;  3WCY I;  4A3I D;  5D59 A;  4XNI A;  4NEJ A;  1BP3 A;  3INK C;  3NCE A;  3NCF A;  1Z7C A;  4TPG A;  3PIW A;  3QAZ A;  2B8Z A;  2LMS A;  4A3J D;  4QIQ A;  2JA7 D;  2B8Y A;  1HWG A;  5A2O A;  3PO3 D;  3QWR B;  4NN7 A;  1PV6 A;  4YQX A;  1CSG A;  4OH3 A;  4YB9 D;  4D2B A;  4GC0 A;  4NKQ C;  2KZ1 A;  3HOX D;  1V7N V;  1Y1W D;  3SE3 B;  4O9H A;  4J4L C;  4ZW9 A;  4IKV A;  3G9V B;  4A3K D;  1IL6 A;  1V7M V;  1ILK A;  2JA5 D;  3BPO A;  1HZI A;  1M4A A;  1INR A;  4GS7 A;  4ZYR A;  3S9D A;  4DKD A;  2B5I A;  3D48 P;  3PIV A;  3DI2 A;  5IYB D;  4BY7 D;  1NBP A;  1M49 A;  5D6K A;  4NEM A;  4MHL A;  4O6K A;  4EXP A;  5FLM D;  4A3E D;  1YKB A;  2O27 A;  3LB6 A;  1BGD A;  2JA6 D;  3H3V E;  4DKE A;  2XQB A;  5LQB A;  5FHX A;  1HIK A;  1EER A;  4PYP A;  2O6I A;  1Y6M L;  2D9Q A;  2INT A;  4BY1 D;  2B63 D;  3HHR A;  2ILK A;  5C3E D;  2R92 D;  4GRW A;  3H0G D;  1EMR A;  5EQG A;  4YDY I;  4IU9 A;  2B8X A;  5C44 D;  1ALU A;  4NI7 A;  1CN4 C;  1EXZ A;  2B90 A;  1M48 A;  1FG9 A;  4Z5R D;  3EJJ A;  3NCB A;  1HIJ A;  3BPL A;  3SE4 B;  1B5L A;  4APS A;  1WU3 I;  4A3M D;  4WRL B;  1ITF A;  2D48 A;  5FUC A;  4A3C D;  4GBY A;  1M4C A;  1HUW A;  1Y1V D;  3HOU D;  2Q14 A;  4A3F D;  1Y14 A;  5D58 A;  4J05 A;  5L6Y C;  4IKZ A;  4I77 Z;  3O7P A;  3BES L;  5GXB A;  1BCN A;  1HGU A;  1I1R B;  3UX9 A;  4A3D D;  1PW6 A;  2Q7N B;  2IL6 A;  3DLQ I;  4NN6 A;  1PV7 A;  1ITM A;  3FKI D;  2B91 A;  3QB1 A;  3NCC A;  3UF5 A;  3HOZ D;  1M4B A;  2PSM A;  1GA3 A;  1BGE A;  2XUT A;  2H24 A;  1HUL A;  5A2N A;  4TPJ A;  4NI9 A;  1BGC A;  1PGR A;  2GMF A;  2OQP A;  4YUE C;  3UEZ E;  4U4V A;  2Z3Q A;  4FA8 E;  1ITL A;  1AX8 A;  1EKU A;  3B5K A;  4PS4 A;  1A7M A;  3L5X A;  3LB6 B;  3MZG A;  1LK3 A;  1RHG A;  5C65 A;  4A3L D;  3IRH A;  4ZS7 A;  4JA3 A;  2HYM B;  4A93 D;  3Q1S I;  1CYL A;  2CFP A;  2E9W C;  4CNI C;  2ERJ D;  1GNC A;  1IJZ A;  1BBN A;  3QT2 C;  4YBQ A;  3DUH C;  1CNT 1;  4EXN A;  1IAR A;  1LQS L;  2L3Y A;  4YPG C;  1PW4 A;  3HOY D;  3HMX B;  3TGX B;  5EQI A;  1EVS A;  5IP9 D;  1RFB A;  3N06 A;  2VUM D;  1JLI A;  1F45 B;  1AXI A;  4BXX D;  4U4W A;  1QVN A;  2LAG A;  1F6F A;  3L5W I;  2R93 D;  1M4R A;  2O26 A;  3DGC L;  5C7X A;  5IP7 D;  4ZWC A;  5C4X D;  1M47 A;  3NPZ A;  4LEP A;  5TS9 A;  5E4E A;  2Z3R A;  4W6V A;  4BBS D;  4IU8 A;  3I4N D;  4D2D A;  2Y5Y A;  1A22 A;  4IKX A;  4JRE A;  1IK0 A;  4OAA A;  3HHC A;  1D9C A;  3EW3 A;  3PO2 D;  4LDS A;  3HOV D;  1ETE A;  3OG4 A;  2CFQ A;  1FYH A;  1BUY A;  3N0P A;  4TPH A;  2R7Z D;  3D87 A;  4UVM A;  5D70 A;  1LKI A;  2Q98 A;  3D85 C;  1KF9 A;  3O7Q A;  3HOW D;  4D2C A;  1IRL A;  1WCM D;  4ZWB A;  1Z92 A;  1VLK A;  4DOH A;  4RS1 A;  5IYC D;  1ITI A;  3G6D A;  3WDO A;  3UF2 A;  1PVH B;  4A3G D;  2V8N A;  5EQH A;  3VA2 A;  4GBZ A;  5D72 A;  3OQ3 A;  1N1F A;  3QB7 A;  1D9G A;  2C35 A;  1J7V L;  5D71 A;  1AU1 A;  4DKC A;  4IKY A;  5D22 A;  4ZF7 A;  4U4T A;  1SCF A;  4NN5 A;  3BPN A;  2JA8 D;  1Y6N L;  4X51 A;  4A3B D;  2CYK A;  1RCB A;  5D28 B; 
#chains in the Genus database with same CATH homology
 3O7Q A;  1PV7 A;  4OAA A;  4XNI A;  1PW4 A;  5D59 A;  5EQG A;  4D2C A;  4Q65 A;  4XNJ A;  4ZWB A;  4OH3 A;  4TPG A;  4IU9 A;  4IKY A;  4ZW9 A;  4GBY A;  4JA3 A;  4LDS A;  4U4T A;  4YB9 D;  5D58 A;  2XUT A;  5EQI A;  2CFP A;  2CFQ A;  4J05 A;  4IKV A;  4ZWC A;  4TPJ A;  5A2N A;  4IKZ A;  4QIQ A;  4PYP A;  3WDO A;  4LEP A;  4D2B A;  4TPH A;  3O7P A;  5GXB A;  4YBQ A;  5D6K A;  2V8N A;  5A2O A;  4W6V A;  4UVM A;  5EQH A;  4IU8 A;  4GBZ A;  4D2D A;  2Y5Y A;  4JR9 A;  5C65 A;  4GC0 A;  4IKX A;  4IKW A;  4U4W A;  4APS A;  4JRE A;  4U4V A;  1PV6 A;  4ZYR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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