4LF5D

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S rRNA
publication title Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
rcsb
total genus 55
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2013-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 4lf5D01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 4lf5D02
4DR5D 2UXDD 2VQED 4LFCD 4JI2D 5IWAD 4B3TD 1XMOD 4JI7D 4JI5D 1N32D 4B3MD 4DR3D 1HNXD 1VIOA 4DV5D 4LFAD 4JI0D 1FKAD 4B3SD 4JI3D 1IBMD 3KBGA 4GKKD 1IBLD 4JI1D 4B3RD 1HNZD 1C05A 4NXMD 4K0KD 1JH3A 4DR1D 1FJGD 5BR8D 4JV5D 3DH3A 1XNRD 4LGTA 4DV1D 4X66D 2HHHD 4LF7D 1N36D 4OUDA 2E5LD 2K6PA 4X65D 4X64D 4AQYD 2UXBD 1KSLA 4DV2D 1N34D 3OTOD 2F4VD 4DR4D 4DR2D 1H3EA 4GKJD 3T1YD 4YY3D 1N33D 1H3FA 2JANA 4LFBD 2VQFD 1HR0D 4OX9D 4DV7D 4DV6D 1IBKD 1DM9A 1HNWD 2UUBD 5LMUD 1C06A 4DR7D 4DV3D 4X62D 2UU9D 3HP7A 1KSKA 4JYAD 4LF9D 1I94D 4LF5D 1XNQD 4NXND 4JI4D 3T1HD 4JI8D 4LF8D 1J5ED 1P9KA 4LF4D 5LMND 2UXCD 2UUAD 2ISTA 4JI6D 4LF6D 4KHPD 4DR6D 2UUCD 4YHHD 4DV4D 4DUZD 1KSVA 1XMQD 4DUYD 2ZM6D 4DV0D 2KTLA
chains in the Genus database with same CATH superfamily
4DR5D 4II2A 2UXDD 2VQED 4LFCD 5KNLA 4JI2D 5IWAD 4B3TD 1XMOD 4JI7D 4JI5D 1N32D 4B3MD 4DR3D 1HNXD 1VIOA 4DV5D 4LFAD 4JI0D 1FKAD 3FN1A 4B3SD 3ONGA 4JI3D 1IBMD 5FQ2B 2ZTBA 3KBGA 4GKKD 1IBLD 4JI1D 4B3RD 1HNZD 1C05A 4NXMD 4K0KD 1JH3A 4DR1D 1FJGD 5BR8D 1Y8QB 2L3NA 4JV5D 3DH3A 1XNRD 4LGTA 4DV1D 3KYDB 4X66D 2HHHD 4LF7D 1Y8RB 1N36D 4OUDA 4W5VB 2E5LD 2K6PA 2LQ7A 5LL6S 4X65D 4X64D 4AQYD 2UXBD 1KSLA 5IT9E 4DV2D 1N34D 3OTOD 2I1SA 3KYCB 3CMMA 2F4VD 4DR4D 4DR2D 4II3A 4GKJD 1H3EA 3T1YD 4YY3D 1N33D 1H3FA 2JANA 4LFBD 2VQFD 1HR0D 4OX9D 4DV7D 4DV6D 1IBKD 1DM9A 1HNWD 2UUBD 5LMUD 1C06A 4DR7D 4DV3D 4X62D 2UU9D 3HP7A 1KSKA 1Y8XB 5FLXE 3J7AF 4JYAD 4LF9D 1I94D 2NVUB 4LF5D 1XNQD 4NXND 4JI4D 4JI8D 3T1HD 4LF8D 1J5ED 1P9KA 5A2QE 4LF4D 3J80E 5LMND 2UXCD 2UUAD 2ISTA 4JI6D 4LF6D 4KHPD 4DR6D 2UUCD 4YHHD 4NNJA 4DV4D 3ONHA 4DUZD 1KSVA 1XMQD 4DUYD 3J81E 3JAME 2ZM6D 4DV0D 2KTLA
chains in the Genus database with same CATH topology
4DR5D 2UXDD 2VQED 4LFCD 4JI2D 5IWAD 4B3TD 1XMOD 4JI7D 4JI5D 1N32D 4B3MD 4DR3D 1HNXD 1VIOA 4DV5D 4LFAD 4JI0D 1FKAD 4B3SD 4JI3D 1IBMD 3KBGA 4GKKD 1IBLD 4JI1D 4B3RD 1HNZD 1C05A 4NXMD 4K0KD 1JH3A 4DR1D 1FJGD 5BR8D 2L3NA 4JV5D 3DH3A 1XNRD 4LGTA 4DV1D 4X66D 2HHHD 4LF7D 1N36D 4OUDA 2E5LD 2K6PA 4X65D 4X64D 4AQYD 2UXBD 1KSLA 4DV2D 1N34D 3OTOD 2F4VD 4DR4D 4DR2D 1H3EA 4GKJD 3T1YD 4YY3D 1N33D 1H3FA 2JANA 4LFBD 2VQFD 1HR0D 4OX9D 4DV7D 4DV6D 1IBKD 1DM9A 1HNWD 2UUBD 5LMUD 1C06A 4DR7D 4DV3D 4X62D 2UU9D 3HP7A 1KSKA 4JYAD 4LF9D 1I94D 4LF5D 1XNQD 4NXND 4JI4D 4JI8D 3T1HD 4LF8D 1J5ED 1P9KA 4LF4D 5LMND 2UXCD 2UUAD 2ISTA 4JI6D 4LF6D 4KHPD 4DR6D 2UUCD 4YHHD 4DV4D 4DUZD 1KSVA 1XMQD 4DUYD 2ZM6D 4DV0D 2KTLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DR5 D;  2UXD D;  2VQE D;  4LFC D;  4JI2 D;  5IWA D;  4B3T D;  1XMO D;  4JI7 D;  4JI5 D;  1N32 D;  4B3M D;  4DR3 D;  1HNX D;  1VIO A;  4DV5 D;  4LFA D;  4JI0 D;  1FKA D;  4B3S D;  4JI3 D;  1IBM D;  3KBG A;  4GKK D;  1IBL D;  4JI1 D;  4B3R D;  1HNZ D;  1C05 A;  4NXM D;  4K0K D;  1JH3 A;  4DR1 D;  1FJG D;  5BR8 D;  4JV5 D;  3DH3 A;  1XNR D;  4LGT A;  4DV1 D;  4X66 D;  2HHH D;  4LF7 D;  1N36 D;  4OUD A;  2E5L D;  2K6P A;  4X65 D;  4X64 D;  4AQY D;  2UXB D;  1KSL A;  4DV2 D;  1N34 D;  3OTO D;  2F4V D;  4DR4 D;  4DR2 D;  1H3E A;  4GKJ D;  3T1Y D;  4YY3 D;  1N33 D;  1H3F A;  2JAN A;  4LFB D;  2VQF D;  1HR0 D;  4OX9 D;  4DV7 D;  4DV6 D;  1IBK D;  1DM9 A;  1HNW D;  2UUB D;  5LMU D;  1C06 A;  4DR7 D;  4DV3 D;  4X62 D;  2UU9 D;  3HP7 A;  1KSK A;  4JYA D;  4LF9 D;  1I94 D;  4LF5 D;  1XNQ D;  4NXN D;  4JI4 D;  3T1H D;  4JI8 D;  4LF8 D;  1J5E D;  1P9K A;  4LF4 D;  5LMN D;  2UXC D;  2UUA D;  2IST A;  4JI6 D;  4LF6 D;  4KHP D;  4DR6 D;  2UUC D;  4YHH D;  4DV4 D;  4DUZ D;  1KSV A;  1XMQ D;  4DUY D;  2ZM6 D;  4DV0 D;  2KTL A; 
#chains in the Genus database with same CATH topology
 4DR5 D;  4II2 A;  2UXD D;  2VQE D;  4LFC D;  5KNL A;  4JI2 D;  5IWA D;  4B3T D;  1XMO D;  4JI7 D;  4JI5 D;  1N32 D;  4B3M D;  4DR3 D;  1HNX D;  1VIO A;  4DV5 D;  4LFA D;  4JI0 D;  1FKA D;  3FN1 A;  4B3S D;  3ONG A;  4JI3 D;  1IBM D;  5FQ2 B;  2ZTB A;  3KBG A;  4GKK D;  1IBL D;  4JI1 D;  4B3R D;  1HNZ D;  1C05 A;  4NXM D;  4K0K D;  1JH3 A;  4DR1 D;  1FJG D;  5BR8 D;  1Y8Q B;  2L3N A;  4JV5 D;  3DH3 A;  1XNR D;  4LGT A;  4DV1 D;  3KYD B;  4X66 D;  2HHH D;  4LF7 D;  1Y8R B;  1N36 D;  4OUD A;  4W5V B;  2E5L D;  2K6P A;  2LQ7 A;  5LL6 S;  4X65 D;  4X64 D;  4AQY D;  2UXB D;  1KSL A;  5IT9 E;  4DV2 D;  1N34 D;  3OTO D;  2I1S A;  3KYC B;  3CMM A;  2F4V D;  4DR4 D;  4DR2 D;  4II3 A;  4GKJ D;  1H3E A;  3T1Y D;  4YY3 D;  1N33 D;  1H3F A;  2JAN A;  4LFB D;  2VQF D;  1HR0 D;  4OX9 D;  4DV7 D;  4DV6 D;  1IBK D;  1DM9 A;  1HNW D;  2UUB D;  5LMU D;  1C06 A;  4DR7 D;  4DV3 D;  4X62 D;  2UU9 D;  3HP7 A;  1KSK A;  1Y8X B;  5FLX E;  3J7A F;  4JYA D;  4LF9 D;  1I94 D;  2NVU B;  4LF5 D;  1XNQ D;  4NXN D;  4JI4 D;  4JI8 D;  3T1H D;  4LF8 D;  1J5E D;  1P9K A;  5A2Q E;  4LF4 D;  3J80 E;  5LMN D;  2UXC D;  2UUA D;  2IST A;  4JI6 D;  4LF6 D;  4KHP D;  4DR6 D;  2UUC D;  4YHH D;  4NNJ A;  4DV4 D;  3ONH A;  4DUZ D;  1KSV A;  1XMQ D;  4DUY D;  3J81 E;  3JAM E;  2ZM6 D;  4DV0 D;  2KTL A; 
#chains in the Genus database with same CATH homology
 4DR5 D;  2UXD D;  2VQE D;  4LFC D;  4JI2 D;  5IWA D;  4B3T D;  1XMO D;  4JI7 D;  4JI5 D;  1N32 D;  4B3M D;  4DR3 D;  1HNX D;  1VIO A;  4DV5 D;  4LFA D;  4JI0 D;  1FKA D;  4B3S D;  4JI3 D;  1IBM D;  3KBG A;  4GKK D;  1IBL D;  4JI1 D;  4B3R D;  1HNZ D;  1C05 A;  4NXM D;  4K0K D;  1JH3 A;  4DR1 D;  1FJG D;  5BR8 D;  2L3N A;  4JV5 D;  3DH3 A;  1XNR D;  4LGT A;  4DV1 D;  4X66 D;  2HHH D;  4LF7 D;  1N36 D;  4OUD A;  2E5L D;  2K6P A;  4X65 D;  4X64 D;  4AQY D;  2UXB D;  1KSL A;  4DV2 D;  1N34 D;  3OTO D;  2F4V D;  4DR4 D;  4DR2 D;  1H3E A;  4GKJ D;  3T1Y D;  4YY3 D;  1N33 D;  1H3F A;  2JAN A;  4LFB D;  2VQF D;  1HR0 D;  4OX9 D;  4DV7 D;  4DV6 D;  1IBK D;  1DM9 A;  1HNW D;  2UUB D;  5LMU D;  1C06 A;  4DR7 D;  4DV3 D;  4X62 D;  2UU9 D;  3HP7 A;  1KSK A;  4JYA D;  4LF9 D;  1I94 D;  4LF5 D;  1XNQ D;  4NXN D;  4JI4 D;  4JI8 D;  3T1H D;  4LF8 D;  1J5E D;  1P9K A;  4LF4 D;  5LMN D;  2UXC D;  2UUA D;  2IST A;  4JI6 D;  4LF6 D;  4KHP D;  4DR6 D;  2UUC D;  4YHH D;  4DV4 D;  4DUZ D;  1KSV A;  1XMQ D;  4DUY D;  2ZM6 D;  4DV0 D;  2KTL A; 
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similar chains in the pdb database (?% sequence similarity)

 
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