4LFAD

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 58
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2013-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 4lfaD01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 4lfaD02
4B3SD 4DR3D 4LF8D 2JANA 2VQFD 3HP7A 1KSLA 4DV4D 1N32D 5BR8D 4JYAD 4DR1D 4JI3D 4DR5D 4JI2D 1HNXD 4GKKD 5IWAD 5LMND 4LFBD 2ISTA 4DR7D 1XMQD 4JI8D 2UUCD 1JH3A 1N34D 5LMUD 4DR6D 4DV3D 4DUYD 1J5ED 1KSVA 2E5LD 1H3FA 4NXMD 4JI1D 1XMOD 1XNQD 4JI5D 2UU9D 2KTLA 4DUZD 4DV2D 1HR0D 1VIOA 2UUBD 4LF9D 4JV5D 3KBGA 3T1YD 1HNZD 4LGTA 4X66D 4LF5D 4K0KD 4LF7D 4DR4D 1XNRD 4LFCD 4LF4D 1FKAD 1IBKD 1P9KA 1HNWD 1C06A 4DV0D 1IBLD 2K6PA 4NXND 1I94D 4X62D 4DR2D 1KSKA 1DM9A 4JI7D 2F4VD 4DV1D 4B3MD 1C05A 4JI4D 4JI0D 4YHHD 4X64D 4DV6D 1IBMD 2HHHD 2UXDD 1N36D 3OTOD 4DV5D 4AQYD 4KHPD 4DV7D 4JI6D 2VQED 4B3TD 4GKJD 4X65D 1N33D 3T1HD 4OUDA 4YY3D 1FJGD 2UXCD 4LFAD 1H3EA 2ZM6D 3DH3A 2UXBD 4OX9D 4B3RD 4LF6D 2UUAD
chains in the Genus database with same CATH superfamily
4B3SD 4DR3D 4LF8D 2JANA 2NVUB 2VQFD 2L3NA 3HP7A 2LQ7A 3KYDB 1KSLA 4DV4D 1N32D 5BR8D 4JYAD 4DR1D 4JI3D 4DR5D 4JI2D 5A2QE 1HNXD 4GKKD 5IWAD 5LMND 4LFBD 2ISTA 4DR7D 1XMQD 4JI8D 2UUCD 1JH3A 1N34D 5LL6S 5LMUD 4DR6D 4DV3D 4DUYD 4W5VB 1J5ED 1KSVA 2E5LD 1H3FA 1Y8XB 5FLXE 4NXMD 4JI1D 1XMOD 1XNQD 4JI5D 2UU9D 2KTLA 4DUZD 4DV2D 1HR0D 1VIOA 2UUBD 4LF9D 4JV5D 3KBGA 3T1YD 1HNZD 4LGTA 4X66D 4LF5D 4K0KD 4LF7D 4DR4D 1XNRD 4II2A 4LFCD 4LF4D 2I1SA 1FKAD 5FQ2B 1IBKD 1P9KA 2ZTBA 1HNWD 1C06A 3ONGA 4DV0D 1IBLD 2K6PA 4NXND 1I94D 4X62D 4DR2D 1KSKA 1DM9A 4JI7D 2F4VD 4DV1D 4NNJA 4B3MD 1C05A 3CMMA 4JI4D 4JI0D 3KYCB 5KNLA 4YHHD 4X64D 4DV6D 1IBMD 2HHHD 2UXDD 1Y8RB 1N36D 3OTOD 4DV5D 4II3A 3J81E 4AQYD 4KHPD 4DV7D 4JI6D 2VQED 4B3TD 4GKJD 4X65D 1N33D 3T1HD 4OUDA 4YY3D 1FJGD 2UXCD 3J80E 4LFAD 1Y8QB 3JAME 1H3EA 2ZM6D 5IT9E 3DH3A 2UXBD 4OX9D 3J7AF 4B3RD 4LF6D 3ONHA 2UUAD 3FN1A
chains in the Genus database with same CATH topology
4B3SD 4DR3D 4LF8D 2JANA 2VQFD 2L3NA 3HP7A 1KSLA 4DV4D 1N32D 5BR8D 4JYAD 4DR1D 4JI3D 4DR5D 4JI2D 1HNXD 4GKKD 5IWAD 5LMND 4LFBD 2ISTA 4DR7D 1XMQD 4JI8D 2UUCD 1JH3A 1N34D 5LMUD 4DR6D 4DV3D 4DUYD 1J5ED 1KSVA 2E5LD 1H3FA 4NXMD 4JI1D 1XMOD 1XNQD 4JI5D 2UU9D 2KTLA 4DUZD 4DV2D 1HR0D 1VIOA 2UUBD 4LF9D 4JV5D 3KBGA 3T1YD 1HNZD 4LGTA 4X66D 4LF5D 4K0KD 4LF7D 4DR4D 1XNRD 4LFCD 4LF4D 1FKAD 1IBKD 1P9KA 1HNWD 1C06A 4DV0D 1IBLD 2K6PA 4NXND 1I94D 4X62D 4DR2D 1KSKA 1DM9A 4JI7D 2F4VD 4DV1D 4B3MD 1C05A 4JI4D 4JI0D 4YHHD 4X64D 4DV6D 1IBMD 2HHHD 2UXDD 1N36D 3OTOD 4DV5D 4AQYD 4KHPD 4DV7D 4JI6D 2VQED 4B3TD 4GKJD 4X65D 1N33D 3T1HD 4OUDA 4YY3D 1FJGD 2UXCD 4LFAD 1H3EA 2ZM6D 3DH3A 2UXBD 4OX9D 4B3RD 4LF6D 2UUAD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B3S D;  4DR3 D;  4LF8 D;  2JAN A;  2VQF D;  3HP7 A;  1KSL A;  4DV4 D;  1N32 D;  5BR8 D;  4JYA D;  4DR1 D;  4JI3 D;  4DR5 D;  4JI2 D;  1HNX D;  4GKK D;  5IWA D;  5LMN D;  4LFB D;  2IST A;  4DR7 D;  1XMQ D;  4JI8 D;  2UUC D;  1JH3 A;  1N34 D;  5LMU D;  4DR6 D;  4DV3 D;  4DUY D;  1J5E D;  1KSV A;  2E5L D;  1H3F A;  4NXM D;  4JI1 D;  1XMO D;  1XNQ D;  4JI5 D;  2UU9 D;  2KTL A;  4DUZ D;  4DV2 D;  1HR0 D;  1VIO A;  2UUB D;  4LF9 D;  4JV5 D;  3KBG A;  3T1Y D;  1HNZ D;  4LGT A;  4X66 D;  4LF5 D;  4K0K D;  4LF7 D;  4DR4 D;  1XNR D;  4LFC D;  4LF4 D;  1FKA D;  1IBK D;  1P9K A;  1HNW D;  1C06 A;  4DV0 D;  1IBL D;  2K6P A;  4NXN D;  1I94 D;  4X62 D;  4DR2 D;  1KSK A;  1DM9 A;  4JI7 D;  2F4V D;  4DV1 D;  4B3M D;  1C05 A;  4JI4 D;  4JI0 D;  4YHH D;  4X64 D;  4DV6 D;  1IBM D;  2HHH D;  2UXD D;  1N36 D;  3OTO D;  4DV5 D;  4AQY D;  4KHP D;  4DV7 D;  4JI6 D;  2VQE D;  4B3T D;  4GKJ D;  4X65 D;  1N33 D;  3T1H D;  4OUD A;  4YY3 D;  1FJG D;  2UXC D;  4LFA D;  1H3E A;  2ZM6 D;  3DH3 A;  2UXB D;  4OX9 D;  4B3R D;  4LF6 D;  2UUA D; 
#chains in the Genus database with same CATH topology
 4B3S D;  4DR3 D;  4LF8 D;  2JAN A;  2NVU B;  2VQF D;  2L3N A;  3HP7 A;  2LQ7 A;  3KYD B;  1KSL A;  4DV4 D;  1N32 D;  5BR8 D;  4JYA D;  4DR1 D;  4JI3 D;  4DR5 D;  4JI2 D;  5A2Q E;  1HNX D;  4GKK D;  5IWA D;  5LMN D;  4LFB D;  2IST A;  4DR7 D;  1XMQ D;  4JI8 D;  2UUC D;  1JH3 A;  1N34 D;  5LL6 S;  5LMU D;  4DR6 D;  4DV3 D;  4DUY D;  4W5V B;  1J5E D;  1KSV A;  2E5L D;  1H3F A;  1Y8X B;  5FLX E;  4NXM D;  4JI1 D;  1XMO D;  1XNQ D;  4JI5 D;  2UU9 D;  2KTL A;  4DUZ D;  4DV2 D;  1HR0 D;  1VIO A;  2UUB D;  4LF9 D;  4JV5 D;  3KBG A;  3T1Y D;  1HNZ D;  4LGT A;  4X66 D;  4LF5 D;  4K0K D;  4LF7 D;  4DR4 D;  1XNR D;  4II2 A;  4LFC D;  4LF4 D;  2I1S A;  1FKA D;  5FQ2 B;  1IBK D;  1P9K A;  2ZTB A;  1HNW D;  1C06 A;  3ONG A;  4DV0 D;  1IBL D;  2K6P A;  4NXN D;  1I94 D;  4X62 D;  4DR2 D;  1KSK A;  1DM9 A;  4JI7 D;  2F4V D;  4DV1 D;  4NNJ A;  4B3M D;  1C05 A;  3CMM A;  4JI4 D;  4JI0 D;  3KYC B;  5KNL A;  4YHH D;  4X64 D;  4DV6 D;  1IBM D;  2HHH D;  2UXD D;  1Y8R B;  1N36 D;  3OTO D;  4DV5 D;  4II3 A;  3J81 E;  4AQY D;  4KHP D;  4DV7 D;  4JI6 D;  2VQE D;  4B3T D;  4GKJ D;  4X65 D;  1N33 D;  3T1H D;  4OUD A;  4YY3 D;  1FJG D;  2UXC D;  3J80 E;  4LFA D;  1Y8Q B;  3JAM E;  1H3E A;  2ZM6 D;  5IT9 E;  3DH3 A;  2UXB D;  4OX9 D;  3J7A F;  4B3R D;  4LF6 D;  3ONH A;  2UUA D;  3FN1 A; 
#chains in the Genus database with same CATH homology
 4B3S D;  4DR3 D;  4LF8 D;  2JAN A;  2VQF D;  2L3N A;  3HP7 A;  1KSL A;  4DV4 D;  1N32 D;  5BR8 D;  4JYA D;  4DR1 D;  4JI3 D;  4DR5 D;  4JI2 D;  1HNX D;  4GKK D;  5IWA D;  5LMN D;  4LFB D;  2IST A;  4DR7 D;  1XMQ D;  4JI8 D;  2UUC D;  1JH3 A;  1N34 D;  5LMU D;  4DR6 D;  4DV3 D;  4DUY D;  1J5E D;  1KSV A;  2E5L D;  1H3F A;  4NXM D;  4JI1 D;  1XMO D;  1XNQ D;  4JI5 D;  2UU9 D;  2KTL A;  4DUZ D;  4DV2 D;  1HR0 D;  1VIO A;  2UUB D;  4LF9 D;  4JV5 D;  3KBG A;  3T1Y D;  1HNZ D;  4LGT A;  4X66 D;  4LF5 D;  4K0K D;  4LF7 D;  4DR4 D;  1XNR D;  4LFC D;  4LF4 D;  1FKA D;  1IBK D;  1P9K A;  1HNW D;  1C06 A;  4DV0 D;  1IBL D;  2K6P A;  4NXN D;  1I94 D;  4X62 D;  4DR2 D;  1KSK A;  1DM9 A;  4JI7 D;  2F4V D;  4DV1 D;  4B3M D;  1C05 A;  4JI4 D;  4JI0 D;  4YHH D;  4X64 D;  4DV6 D;  1IBM D;  2HHH D;  2UXD D;  1N36 D;  3OTO D;  4DV5 D;  4AQY D;  4KHP D;  4DV7 D;  4JI6 D;  2VQE D;  4B3T D;  4GKJ D;  4X65 D;  1N33 D;  3T1H D;  4OUD A;  4YY3 D;  1FJG D;  2UXC D;  4LFA D;  1H3E A;  2ZM6 D;  3DH3 A;  2UXB D;  4OX9 D;  4B3R D;  4LF6 D;  2UUA D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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