4LFCD

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S rRNA
total genus 56
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2013-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 4lfcD01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 4lfcD02
1P9KA 4DV2D 4X66D 1XMOD 4JI0D 1KSKA 1KSVA 4DR3D 1N36D 4JI5D 4JI7D 3DH3A 4DR1D 2F4VD 1JH3A 4JI6D 5LMND 4LFAD 2K6PA 1C05A 4LF9D 4DUZD 1N33D 1VIOA 4LGTA 4K0KD 1XMQD 1FJGD 2ZM6D 1H3EA 4DV6D 4X62D 4JI4D 4LF4D 2ISTA 2JANA 4B3MD 4X65D 4JYAD 1IBMD 4KHPD 3HP7A 2E5LD 4GKJD 1HNWD 4X64D 4LF8D 1C06A 1H3FA 1XNQD 4YY3D 4NXMD 4LFBD 4NXND 2UXCD 2UXBD 4DV4D 1N32D 4JI1D 5IWAD 4DV1D 2HHHD 4OX9D 2UUAD 1J5ED 4LF7D 4DUYD 4GKKD 1N34D 2UU9D 3T1HD 4LFCD 4DV5D 4JV5D 2VQFD 4DR6D 4OUDA 1HNZD 4DR5D 1KSLA 4DR4D 1HNXD 4DR7D 4DV3D 1IBLD 3T1YD 4JI2D 4B3TD 4B3RD 2VQED 1I94D 1HR0D 1FKAD 4DV0D 4DR2D 4DV7D 4YHHD 4AQYD 3KBGA 1DM9A 2UUCD 1IBKD 5LMUD 4LF6D 2UXDD 2UUBD 3OTOD 4LF5D 4B3SD 4JI3D 5BR8D 4JI8D 2KTLA 1XNRD
chains in the Genus database with same CATH superfamily
1P9KA 4DV2D 4X66D 1XMOD 4JI0D 3FN1A 1KSKA 3J81E 1KSVA 4DR3D 1N36D 4JI5D 4JI7D 5A2QE 3DH3A 4DR1D 2F4VD 1JH3A 2LQ7A 4JI6D 5LMND 4LFAD 2K6PA 2I1SA 4LF9D 1C05A 4DUZD 1N33D 1VIOA 4LGTA 4K0KD 1XMQD 1FJGD 2ZM6D 2NVUB 3JAME 3J80E 1H3EA 4DV6D 4X62D 4JI4D 4LF4D 2ISTA 3ONHA 2JANA 4B3MD 5FQ2B 4X65D 4JYAD 1IBMD 4KHPD 1Y8QB 3HP7A 2E5LD 4GKJD 1HNWD 5FLXE 4X64D 3CMMA 5LL6S 4LF8D 1C06A 1H3FA 1XNQD 4YY3D 4NXMD 4II3A 4LFBD 4NXND 2UXCD 2UXBD 4DV4D 1N32D 4JI1D 5IWAD 4DV1D 2HHHD 3J7AF 4OX9D 2UUAD 1J5ED 4LF7D 4DUYD 2L3NA 4GKKD 1N34D 2ZTBA 2UU9D 4II2A 3KYCB 4NNJA 3T1HD 4LFCD 4DV5D 4JV5D 4W5VB 1Y8RB 2VQFD 4DR6D 5KNLA 4OUDA 1HNZD 4DR5D 1KSLA 4DR4D 1HNXD 4DR7D 4DV3D 1IBLD 3T1YD 4JI2D 4B3TD 4B3RD 2VQED 1I94D 1HR0D 1FKAD 4DV0D 5IT9E 4DR2D 4DV7D 4YHHD 3ONGA 4AQYD 3KBGA 1DM9A 2UUCD 1IBKD 5LMUD 4LF6D 3KYDB 2UXDD 2UUBD 1Y8XB 3OTOD 4LF5D 4B3SD 4JI3D 5BR8D 4JI8D 2KTLA 1XNRD
chains in the Genus database with same CATH topology
1P9KA 4DV2D 4X66D 1XMOD 4JI0D 1KSKA 1KSVA 4DR3D 1N36D 4JI5D 4JI7D 3DH3A 4DR1D 2F4VD 1JH3A 4JI6D 5LMND 4LFAD 2K6PA 4LF9D 1C05A 4DUZD 1N33D 1VIOA 4LGTA 4K0KD 1XMQD 1FJGD 2ZM6D 1H3EA 4DV6D 4X62D 4JI4D 4LF4D 2ISTA 2JANA 4B3MD 4X65D 4JYAD 1IBMD 4KHPD 3HP7A 2E5LD 4GKJD 1HNWD 4X64D 4LF8D 1C06A 1H3FA 1XNQD 4YY3D 4NXMD 4LFBD 4NXND 2UXCD 2UXBD 4DV4D 1N32D 4JI1D 5IWAD 4DV1D 2HHHD 4OX9D 2UUAD 1J5ED 4LF7D 4DUYD 2L3NA 4GKKD 1N34D 2UU9D 3T1HD 4LFCD 4DV5D 4JV5D 2VQFD 4DR6D 4OUDA 1HNZD 4DR5D 1KSLA 4DR4D 1HNXD 4DR7D 4DV3D 1IBLD 3T1YD 4JI2D 4B3TD 4B3RD 2VQED 1I94D 1HR0D 1FKAD 4DV0D 4DR2D 4DV7D 4YHHD 4AQYD 3KBGA 1DM9A 2UUCD 1IBKD 5LMUD 4LF6D 2UXDD 2UUBD 3OTOD 4LF5D 4B3SD 4JI3D 5BR8D 4JI8D 2KTLA 1XNRD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P9K A;  4DV2 D;  4X66 D;  1XMO D;  4JI0 D;  1KSK A;  1KSV A;  4DR3 D;  1N36 D;  4JI5 D;  4JI7 D;  3DH3 A;  4DR1 D;  2F4V D;  1JH3 A;  4JI6 D;  5LMN D;  4LFA D;  2K6P A;  1C05 A;  4LF9 D;  4DUZ D;  1N33 D;  1VIO A;  4LGT A;  4K0K D;  1XMQ D;  1FJG D;  2ZM6 D;  1H3E A;  4DV6 D;  4X62 D;  4JI4 D;  4LF4 D;  2IST A;  2JAN A;  4B3M D;  4X65 D;  4JYA D;  1IBM D;  4KHP D;  3HP7 A;  2E5L D;  4GKJ D;  1HNW D;  4X64 D;  4LF8 D;  1C06 A;  1H3F A;  1XNQ D;  4YY3 D;  4NXM D;  4LFB D;  4NXN D;  2UXC D;  2UXB D;  4DV4 D;  1N32 D;  4JI1 D;  5IWA D;  4DV1 D;  2HHH D;  4OX9 D;  2UUA D;  1J5E D;  4LF7 D;  4DUY D;  4GKK D;  1N34 D;  2UU9 D;  3T1H D;  4LFC D;  4DV5 D;  4JV5 D;  2VQF D;  4DR6 D;  4OUD A;  1HNZ D;  4DR5 D;  1KSL A;  4DR4 D;  1HNX D;  4DR7 D;  4DV3 D;  1IBL D;  3T1Y D;  4JI2 D;  4B3T D;  4B3R D;  2VQE D;  1I94 D;  1HR0 D;  1FKA D;  4DV0 D;  4DR2 D;  4DV7 D;  4YHH D;  4AQY D;  3KBG A;  1DM9 A;  2UUC D;  1IBK D;  5LMU D;  4LF6 D;  2UXD D;  2UUB D;  3OTO D;  4LF5 D;  4B3S D;  4JI3 D;  5BR8 D;  4JI8 D;  2KTL A;  1XNR D; 
#chains in the Genus database with same CATH topology
 1P9K A;  4DV2 D;  4X66 D;  1XMO D;  4JI0 D;  3FN1 A;  1KSK A;  3J81 E;  1KSV A;  4DR3 D;  1N36 D;  4JI5 D;  4JI7 D;  5A2Q E;  3DH3 A;  4DR1 D;  2F4V D;  1JH3 A;  2LQ7 A;  4JI6 D;  5LMN D;  4LFA D;  2K6P A;  2I1S A;  4LF9 D;  1C05 A;  4DUZ D;  1N33 D;  1VIO A;  4LGT A;  4K0K D;  1XMQ D;  1FJG D;  2ZM6 D;  2NVU B;  3JAM E;  3J80 E;  1H3E A;  4DV6 D;  4X62 D;  4JI4 D;  4LF4 D;  2IST A;  3ONH A;  2JAN A;  4B3M D;  5FQ2 B;  4X65 D;  4JYA D;  1IBM D;  4KHP D;  1Y8Q B;  3HP7 A;  2E5L D;  4GKJ D;  1HNW D;  5FLX E;  4X64 D;  3CMM A;  5LL6 S;  4LF8 D;  1C06 A;  1H3F A;  1XNQ D;  4YY3 D;  4NXM D;  4II3 A;  4LFB D;  4NXN D;  2UXC D;  2UXB D;  4DV4 D;  1N32 D;  4JI1 D;  5IWA D;  4DV1 D;  2HHH D;  3J7A F;  4OX9 D;  2UUA D;  1J5E D;  4LF7 D;  4DUY D;  2L3N A;  4GKK D;  1N34 D;  2ZTB A;  2UU9 D;  4II2 A;  3KYC B;  4NNJ A;  3T1H D;  4LFC D;  4DV5 D;  4JV5 D;  4W5V B;  1Y8R B;  2VQF D;  4DR6 D;  5KNL A;  4OUD A;  1HNZ D;  4DR5 D;  1KSL A;  4DR4 D;  1HNX D;  4DR7 D;  4DV3 D;  1IBL D;  3T1Y D;  4JI2 D;  4B3T D;  4B3R D;  2VQE D;  1I94 D;  1HR0 D;  1FKA D;  4DV0 D;  5IT9 E;  4DR2 D;  4DV7 D;  4YHH D;  3ONG A;  4AQY D;  3KBG A;  1DM9 A;  2UUC D;  1IBK D;  5LMU D;  4LF6 D;  3KYD B;  2UXD D;  2UUB D;  1Y8X B;  3OTO D;  4LF5 D;  4B3S D;  4JI3 D;  5BR8 D;  4JI8 D;  2KTL A;  1XNR D; 
#chains in the Genus database with same CATH homology
 1P9K A;  4DV2 D;  4X66 D;  1XMO D;  4JI0 D;  1KSK A;  1KSV A;  4DR3 D;  1N36 D;  4JI5 D;  4JI7 D;  3DH3 A;  4DR1 D;  2F4V D;  1JH3 A;  4JI6 D;  5LMN D;  4LFA D;  2K6P A;  4LF9 D;  1C05 A;  4DUZ D;  1N33 D;  1VIO A;  4LGT A;  4K0K D;  1XMQ D;  1FJG D;  2ZM6 D;  1H3E A;  4DV6 D;  4X62 D;  4JI4 D;  4LF4 D;  2IST A;  2JAN A;  4B3M D;  4X65 D;  4JYA D;  1IBM D;  4KHP D;  3HP7 A;  2E5L D;  4GKJ D;  1HNW D;  4X64 D;  4LF8 D;  1C06 A;  1H3F A;  1XNQ D;  4YY3 D;  4NXM D;  4LFB D;  4NXN D;  2UXC D;  2UXB D;  4DV4 D;  1N32 D;  4JI1 D;  5IWA D;  4DV1 D;  2HHH D;  4OX9 D;  2UUA D;  1J5E D;  4LF7 D;  4DUY D;  2L3N A;  4GKK D;  1N34 D;  2UU9 D;  3T1H D;  4LFC D;  4DV5 D;  4JV5 D;  2VQF D;  4DR6 D;  4OUD A;  1HNZ D;  4DR5 D;  1KSL A;  4DR4 D;  1HNX D;  4DR7 D;  4DV3 D;  1IBL D;  3T1Y D;  4JI2 D;  4B3T D;  4B3R D;  2VQE D;  1I94 D;  1HR0 D;  1FKA D;  4DV0 D;  4DR2 D;  4DV7 D;  4YHH D;  4AQY D;  3KBG A;  1DM9 A;  2UUC D;  1IBK D;  5LMU D;  4LF6 D;  2UXD D;  2UUB D;  3OTO D;  4LF5 D;  4B3S D;  4JI3 D;  5BR8 D;  4JI8 D;  2KTL A;  1XNR D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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