4LHFA

Crystal structure of a dna binding protein from phage p2
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
81
structure length
79
Chain Sequence
LMTDAIPYQEFAKLIGKSTGAVRRMIDKGKLPVIDMTDPQSASAGEYWVYLPAWNNGLKLAYESRPKEIRDGWLMWLGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Regulatory protein cox
publication title Structural insight into DNA binding and oligomerization of the multifunctional Cox protein of bacteriophage P2.
pubmed doi rcsb
source organism Enterobacteria phage p2
total genus 22
structure length 79
sequence length 81
ec nomenclature
pdb deposition date 2013-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10743 Phage_Cox Regulatory phage protein cox
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.70 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 4lhfA00
4LHFA
chains in the Genus database with same CATH superfamily
4DCZA 1Q07A 4WLWA 2ZHGA 1Y6UA 3HH0A 3D70A 2KVVA 3EZFA 4LHFA 1Q06A 2VZ4A 3D6YA 2OG0A 5I44A 4R24B 1Q05A 3Q1MA 3QAOA 4R22B 3Q5PA 5E01A 1PM6A 1JBGA 3Q2YA 3UCSA 4J2NA 3Q5SA 3GPVA 2JMLA 2DG6A 3EZ9A 3EZ7A 5D90A 3EZ6A 1EXJA 3Q5RA 2IEFA 5D8CA 1LX8A 1R8DA 1Q08A 4WLSA 1R8EA 1Q0AA 1Q09A 1EXIA 2ZHHA 4R4EA 5I41B 3D6ZA 3EZ2A 3D71A 3Q3DA 3GP4A 1RH6A 3IAOA
chains in the Genus database with same CATH topology
4DCZA 1Q07A 4WLWA 2ZHGA 1Y6UA 3HH0A 3D70A 2KVVA 3EZFA 4LHFA 1Q06A 2VZ4A 3D6YA 2OG0A 5I44A 4R24B 1Q05A 3Q1MA 3QAOA 4R22B 3Q5PA 5E01A 1PM6A 1JBGA 3Q2YA 3UCSA 4J2NA 3Q5SA 3GPVA 2JMLA 2DG6A 3EZ9A 3EZ7A 5D90A 3EZ6A 1EXJA 3Q5RA 2IEFA 5D8CA 1LX8A 1R8DA 1Q08A 4WLSA 1R8EA 1Q0AA 1Q09A 1EXIA 2ZHHA 4R4EA 5I41B 3D6ZA 3EZ2A 3D71A 3Q3DA 3GP4A 1RH6A 3IAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LHF A; 
#chains in the Genus database with same CATH topology
 4DCZ A;  1Q07 A;  4WLW A;  2ZHG A;  1Y6U A;  3HH0 A;  3D70 A;  2KVV A;  3EZF A;  4LHF A;  1Q06 A;  2VZ4 A;  3D6Y A;  2OG0 A;  5I44 A;  4R24 B;  1Q05 A;  3Q1M A;  3QAO A;  4R22 B;  3Q5P A;  5E01 A;  1PM6 A;  1JBG A;  3Q2Y A;  3UCS A;  4J2N A;  3Q5S A;  3GPV A;  2JML A;  2DG6 A;  3EZ9 A;  3EZ7 A;  5D90 A;  3EZ6 A;  1EXJ A;  3Q5R A;  2IEF A;  5D8C A;  1LX8 A;  1R8D A;  1Q08 A;  4WLS A;  1R8E A;  1Q0A A;  1Q09 A;  1EXI A;  2ZHH A;  4R4E A;  5I41 B;  3D6Z A;  3EZ2 A;  3D71 A;  3Q3D A;  3GP4 A;  1RH6 A;  3IAO A; 
#chains in the Genus database with same CATH homology
 4DCZ A;  1Q07 A;  4WLW A;  2ZHG A;  1Y6U A;  3HH0 A;  3D70 A;  2KVV A;  3EZF A;  4LHF A;  1Q06 A;  2VZ4 A;  3D6Y A;  2OG0 A;  5I44 A;  4R24 B;  1Q05 A;  3Q1M A;  3QAO A;  4R22 B;  3Q5P A;  5E01 A;  1PM6 A;  1JBG A;  3Q2Y A;  3UCS A;  4J2N A;  3Q5S A;  3GPV A;  2JML A;  2DG6 A;  3EZ9 A;  3EZ7 A;  5D90 A;  3EZ6 A;  1EXJ A;  3Q5R A;  2IEF A;  5D8C A;  1LX8 A;  1R8D A;  1Q08 A;  4WLS A;  1R8E A;  1Q0A A;  1Q09 A;  1EXI A;  2ZHH A;  4R4E A;  5I41 B;  3D6Z A;  3EZ2 A;  3D71 A;  3Q3D A;  3GP4 A;  1RH6 A;  3IAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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