4LIYA

Structure of the adenovirus 3 knob domain k217e and f224s mutant
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
190
structure length
186
Chain Sequence
NNTLWTGPKPEANCIIEYGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELEYKSSARGFMPSTTAYPFVLPNAGTHNENYIFGQCYYKASDGALFPLEVTVMLNKRLPDSRTSYVMTFLWSLNAGLAPETTQATLITSPFTFSYIREDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Fiber protein
publication title Structural and functional studies on the interaction of adenovirus fiber knobs and desmoglein 2
pubmed doi rcsb
source organism Human adenovirus 3
total genus 40
structure length 186
sequence length 190
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00541 Adeno_knob Adenoviral fibre protein (knob domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.10 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus pIV-related, attachment domain 4liyA00
1KNBA 2J2JA 2W9LC 2BZVA 4LIYA 3O8EA 1P6AA 2O39A 1KACA 2WSTA 1UXBA 4ATZA 4K6VA 1QIUA 4XQAA 4XQBA 2J12A 1QHVA 2QLKA 2WGUA 3EXVA 3F0YA 3EXWA 3QNDA 4K6WA 3CNCA 4WYJA 1H7ZA 2BZUA 4K6TA 4ZDGA 2WBWA 3N0IA 2J1KC 4XL8A 3L88A 2WBVA 1UXEA 2WGTA 1NOBA 1UXAA 3BQ4A 3L89A 4K6UA 1P69A
chains in the Genus database with same CATH superfamily
2IUNA 1KNBA 2IUMA 2J2JA 2VRSA 4GU4A 2W9LC 4CW8A 4D63A 3ZPFA 2BZVA 4LIYA 2OJ6A 3O8EA 1P6AA 2O39A 1KACA 2WSTA 1UXBA 3EOYA 3S6XA 4ATZA 4D62A 4K6VA 1QIUA 4GU3A 2BSFA 4XQAA 2J12A 1QHVA 4XQBA 2OJ5A 2QLKA 2WGUA 3EXVA 2JJLA 3EXWA 3F0YA 3QNDA 3CNCA 4K6WA 4WYJA 1H7ZA 2BZUA 4K6TA 3ZPEA 4ZDGA 2WBWA 3N0IA 2J1KC 4XL8A 2BT7A 3L88A 2WBVA 1KKEA 4XC5A 1UXEA 2WGTA 2BT8A 4ODBA 5MHSA 2VTWA 1NOBA 1UXAA 3BQ4A 3L89A 4K6UA 1P69A
chains in the Genus database with same CATH topology
1KNBA 2J2JA 2W9LC 2BZVA 4LIYA 3O8EA 1P6AA 2O39A 1KACA 2WSTA 1UXBA 4ATZA 4K6VA 1QIUA 4XQAA 4XQBA 2J12A 1QHVA 2QLKA 2WGUA 3EXVA 3F0YA 3EXWA 3QNDA 4K6WA 3CNCA 4WYJA 1H7ZA 2BZUA 4K6TA 4ZDGA 2WBWA 3N0IA 2J1KC 4XL8A 3L88A 2WBVA 1UXEA 2WGTA 1NOBA 1UXAA 3BQ4A 3L89A 4K6UA 1P69A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KNB A;  2J2J A;  2W9L C;  2BZV A;  4LIY A;  3O8E A;  1P6A A;  2O39 A;  1KAC A;  2WST A;  1UXB A;  4ATZ A;  4K6V A;  1QIU A;  4XQA A;  4XQB A;  2J12 A;  1QHV A;  2QLK A;  2WGU A;  3EXV A;  3F0Y A;  3EXW A;  3QND A;  4K6W A;  3CNC A;  4WYJ A;  1H7Z A;  2BZU A;  4K6T A;  4ZDG A;  2WBW A;  3N0I A;  2J1K C;  4XL8 A;  3L88 A;  2WBV A;  1UXE A;  2WGT A;  1NOB A;  1UXA A;  3BQ4 A;  3L89 A;  4K6U A;  1P69 A; 
#chains in the Genus database with same CATH topology
 2IUN A;  1KNB A;  2IUM A;  2J2J A;  2VRS A;  4GU4 A;  2W9L C;  4CW8 A;  4D63 A;  3ZPF A;  2BZV A;  4LIY A;  2OJ6 A;  3O8E A;  1P6A A;  2O39 A;  1KAC A;  2WST A;  1UXB A;  3EOY A;  3S6X A;  4ATZ A;  4D62 A;  4K6V A;  1QIU A;  4GU3 A;  2BSF A;  4XQA A;  2J12 A;  1QHV A;  4XQB A;  2OJ5 A;  2QLK A;  2WGU A;  3EXV A;  2JJL A;  3EXW A;  3F0Y A;  3QND A;  3CNC A;  4K6W A;  4WYJ A;  1H7Z A;  2BZU A;  4K6T A;  3ZPE A;  4ZDG A;  2WBW A;  3N0I A;  2J1K C;  4XL8 A;  2BT7 A;  3L88 A;  2WBV A;  1KKE A;  4XC5 A;  1UXE A;  2WGT A;  2BT8 A;  4ODB A;  5MHS A;  2VTW A;  1NOB A;  1UXA A;  3BQ4 A;  3L89 A;  4K6U A;  1P69 A; 
#chains in the Genus database with same CATH homology
 1KNB A;  2J2J A;  2W9L C;  2BZV A;  4LIY A;  3O8E A;  1P6A A;  2O39 A;  1KAC A;  2WST A;  1UXB A;  4ATZ A;  4K6V A;  1QIU A;  4XQA A;  4XQB A;  2J12 A;  1QHV A;  2QLK A;  2WGU A;  3EXV A;  3F0Y A;  3EXW A;  3QND A;  4K6W A;  3CNC A;  4WYJ A;  1H7Z A;  2BZU A;  4K6T A;  4ZDG A;  2WBW A;  3N0I A;  2J1K C;  4XL8 A;  3L88 A;  2WBV A;  1UXE A;  2WGT A;  1NOB A;  1UXA A;  3BQ4 A;  3L89 A;  4K6U A;  1P69 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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