4LJZE

Crystal structure analysis of the e.coli holoenzyme
Total Genus 25
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
89
structure length
89
Chain Sequence
ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA-directed RNA polymerase subunit alpha
publication title Phage T7 Gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of sigma 70 domain 1.1.
pubmed doi rcsb
source organism Escherichia coli
total genus 25
structure length 89
sequence length 89
chains with identical sequence K
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2013-07-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 4ljzE00
1R9TF 2R92F 5TMCE 4A3BF 5C3EF 4YFXE 3GTOF 1I50F 4A93F 3HOUF 3DXJE 3PO2F 5M5WF 3HOVF 4KN4E 5IYCF 3S2HF 1SFOF 5E18E 5M3MF 4BXXF 2NVYF 3HOXF 1TWCF 1TWGF 1I6HF 3S16F 4MEYE 2WB1I 5M3FF 4KN7E 2A6HE 4YFKE 4JK1E 4A3MF 4A3JF 1SMYE 4XLPE 4XSXE 4BBRF 3I4NF 1WCMF 4G7HE 4C3HF 1I3QF 3M4OF 3H0GF 2VUMF 3K7AF 2A68E 4BBSF 5E17E 5M5YF 4A3GF 3S15F 4OINE 4OIQE 1K83F 2E2IF 4MQ9E 5IYBF 5FLMF 5FJ8F 5D4EE 4ZH4E 4C2MF 2O5JE 4A3KF 2B63F 3HOWF 3GTMF 5IYDF 4C3JF 3GTJF 2O5IE 5C4XF 2E2JF 3GTGF 4OIRE 3HOZF 2BE5E 4A3CF 3HOYF 5IPLE 4Y7NF 5BYHE 4LJZE 3I4MF 2JA5F 5C4JF 4OIOE 4G7ZE 3RZOF 3GTKF 2Y0SI 4OIPE 3GTQF 2JA8F 2E2HF 3CQZF 1Y1WF 1TWHF 5C44F 4X6AF 4Q5SE 4XLNE 4C3IF 4LK1E 3H3VG 4G7OE 1HQME 2JA7F 4BY7F 3M3YF 2A6EE 3S1RF 4LLGE 2NVTF 4BY1F 5IP7F 3S1MF 3GTLF 3S2DF 3RZDF 4A3EF 4Q4ZE 2R93F 2NVQF 1YNJK 1ZYRE 2WAQK 1I6VE 3FKIF 4KMUE 2JA6F 4LK0E 5D4DE 1TWFF 2A69E 4A3IF 3S14F 4GZYE 1Y1VF 1YNNK 2PPBE 2R7ZF 4XSZE 1TWAF 5TMFE 4YFNE 3PO3F 5IP9F 5D4CE 5M5XF 1IW7E 4A3FF 2NVXF 3GTPF 4A3DF 3HKZK 3S17F 4MEXE 4YG2E 1QKLA 4A3LF 2PMZK 3S1QF 2CW0E 3S1NF 4Y52F 3WODE 3EQLE 4AYBK 2YU9F
chains in the Genus database with same CATH superfamily
4A3KE 1R9TF 2R92F 5IP7E 5TMCE 4A3BF 3S1ME 3GTLE 3HOWE 5C3EF 4YFXE 3GTOF 1I50F 4A93F 3HOUF 3DXJE 3PO2F 3GTME 5IYDE 4C3JE 5C4XE 2KRXA 3FKIE 5M5WF 2JA6E 4KN4E 3GTGE 5IYCF 3HOVF 1SFOF 3S2HF 3HOZE 5C4XF 5E18E 5M3MF 4BXXF 2NVYF 4A3CE 3HOYE 3I4ME 3HOXF 2JA5E 1TWCF 5C4JE 1TWAE 1TWGF 2Y0SH 1I6HF 3S16F 4MEYE 2WB1I 5M3FF 4KN7E 2A6HE 3CQZE 3H3VF 1TWHE 5C44E 4X6AE 4YFKE 4JK1E 4A3MF 3GTPE 1DZFA 4A3JF 3S17E 4QIWH 2JA7E 4BY7E 3M3YE 3S1RE 3S2DE 1SMYE 4XLPE 4A3LE 2NVTE 4BY1E 4XSXE 4BBRF 3I4NF 1WCMF 4G7HE 4C3HF 3RZDE 1I3QF 3M4OF 3H0GF 4A3EE 3K7AF 2VUMF 3RZOE 3M4OE 2A68E 4BBSF 2YU9E 2R93E 2NVQE 5E17E 5M5YF 1EIKA 4A3GF 3S15F 4OINE 4OIQE 1TWFE 1K83F 4A3IE 3S14E 2E2IF 4MQ9E 5IYBF 5FLMF 5FJ8F 5D4EE 4ZH4E 1Y1VE 3PO2E 4C2MF 2O5JE 2R7ZE 4A3KF 2B63F 3S2HE 1SFOE 3HOWF 2NVYE 3PO3E 5IP9E 3GTMF 5IYDF 4C3JF 1TWCE 5M5XE 3GTJF 2O5IE 4A3FE 2E2JF 4QIWK 1TWGE 2NVXE 3GTGF 4OIRE 3S16E 3HOZF 4A3DE 1I6HE 4G7OE 2BE5E 4A3CF 3HOYF 5IPLE 3S1QE 4Y7NF 5BYHE 4LJZE 3I4MF 3S1NE 4A3DF 2JA5F 5C4JF 4OIOE 4G7ZE 3RZOF 3GTKF 2Y0SI 4A3JE 4OIPE 3GTQF 2JA8F 4Y52E 2E2HF 3CQZF 1Y1WF 1TWHF 1R9TE 2R92E 5C44F 4X6AF 4Q5SE 4A3BE 4XLNE 3I4NE 4C3IF 4C3HE 4LK1E 5C3EE 2VUME 3K7AE 3H3VG 1I50E 1HQME 3GTOE 2JA7F 3HOUE 4A93E 3HKZH 4BY7F 2A6EE 5M5YE 3S1RF 3M3YF 4LLGE 5M5WE 2NVTF 4BY1F 5IP7F 5IYCE 3HOVE 1K83E 3S1MF 3GTLF 3S2DF 3RZDF 2E2IE 5M3ME 4A3EF 4BXXE 5FJ8E 4Q4ZE 2R93F 3HOXE 1YNJK 2NVQF 4AYBH 1ZYRE 2WAQK 1I6VE 3FKIF 4KMUE 2B63E 2JA6F 2WAQH 4LK0E 1TWFF 2A69E 5D4DE 4A3IF 2WB1H 5M3FE 3S14F 4GZYE 1Y1VF 1YNNK 3GTJE 2PPBE 4A3ME 2R7ZF 2E2JE 4XSZE 1TWAF 5TMFE 4YFNE 3PO3F 5IP9F 4Y7NE 5D4CE 4BBRE 1WCME 5M5XF 1IW7E 1I3QE 4A3FF 3H0GE 2NVXF 3GTPF 3HKZK 2JA8E 3GTKE 3GTQE 3S17F 2E2HE 4BBSE 4MEXE 4YG2E 1Y1WE 1QKLA 4A3GE 3S15E 4A3LF 2PMZK 3S1QF 2CW0E 4C3IE 2PMZH 2YU9F 3S1NF 5IYBE 5FLME 4Y52F 3WODE 3EQLE 4AYBK 4C2ME
chains in the Genus database with same CATH topology
1R9TF 2R92F 5TMCE 4A3BF 5C3EF 4YFXE 3GTOF 1I50F 4A93F 3HOUF 3DXJE 3PO2F 2KRXA 5M5WF 3HOVF 4KN4E 5IYCF 3S2HF 1SFOF 5E18E 5M3MF 4BXXF 2NVYF 3HOXF 1TWCF 1TWGF 1I6HF 3S16F 4MEYE 2WB1I 5M3FF 4KN7E 2A6HE 4YFKE 4JK1E 4A3MF 4A3JF 1SMYE 4XLPE 4XSXE 4BBRF 3I4NF 1WCMF 4G7HE 4C3HF 1I3QF 3M4OF 3H0GF 2VUMF 3K7AF 2A68E 4BBSF 5E17E 5M5YF 4A3GF 3S15F 4OINE 4OIQE 1K83F 2E2IF 4MQ9E 5IYBF 5FLMF 5FJ8F 5D4EE 4ZH4E 4C2MF 2O5JE 4A3KF 2B63F 3HOWF 3GTMF 5IYDF 4C3JF 3GTJF 2O5IE 5C4XF 2E2JF 4QIWK 3GTGF 4OIRE 3HOZF 2BE5E 4A3CF 3HOYF 5IPLE 4Y7NF 5BYHE 4LJZE 3I4MF 2JA5F 5C4JF 4OIOE 4G7ZE 3RZOF 3GTKF 2Y0SI 4OIPE 3GTQF 2JA8F 2E2HF 3CQZF 1Y1WF 1TWHF 5C44F 4X6AF 4Q5SE 4XLNE 4C3IF 4LK1E 3H3VG 4G7OE 1HQME 2JA7F 4BY7F 3M3YF 2A6EE 3S1RF 4LLGE 2NVTF 4BY1F 5IP7F 3S1MF 3GTLF 3S2DF 3RZDF 4A3EF 4Q4ZE 2R93F 2NVQF 1YNJK 1ZYRE 2WAQK 1I6VE 3FKIF 4KMUE 2JA6F 4LK0E 5D4DE 1TWFF 2A69E 4A3IF 3S14F 4GZYE 1Y1VF 1YNNK 2PPBE 2R7ZF 4XSZE 1TWAF 5TMFE 4YFNE 3PO3F 5IP9F 5D4CE 5M5XF 1IW7E 4A3FF 2NVXF 3GTPF 4A3DF 3HKZK 3S17F 4MEXE 4YG2E 1QKLA 4A3LF 2PMZK 3S1QF 2CW0E 3S1NF 4Y52F 3WODE 3EQLE 4AYBK 2YU9F
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R9T F;  2R92 F;  5TMC E;  4A3B F;  5C3E F;  4YFX E;  3GTO F;  1I50 F;  4A93 F;  3HOU F;  3DXJ E;  3PO2 F;  5M5W F;  3HOV F;  4KN4 E;  5IYC F;  3S2H F;  1SFO F;  5E18 E;  5M3M F;  4BXX F;  2NVY F;  3HOX F;  1TWC F;  1TWG F;  1I6H F;  3S16 F;  4MEY E;  2WB1 I;  5M3F F;  4KN7 E;  2A6H E;  4YFK E;  4JK1 E;  4A3M F;  4A3J F;  1SMY E;  4XLP E;  4XSX E;  4BBR F;  3I4N F;  1WCM F;  4G7H E;  4C3H F;  1I3Q F;  3M4O F;  3H0G F;  2VUM F;  3K7A F;  2A68 E;  4BBS F;  5E17 E;  5M5Y F;  4A3G F;  3S15 F;  4OIN E;  4OIQ E;  1K83 F;  2E2I F;  4MQ9 E;  5IYB F;  5FLM F;  5FJ8 F;  5D4E E;  4ZH4 E;  4C2M F;  2O5J E;  4A3K F;  2B63 F;  3HOW F;  3GTM F;  5IYD F;  4C3J F;  3GTJ F;  2O5I E;  5C4X F;  2E2J F;  3GTG F;  4OIR E;  3HOZ F;  2BE5 E;  4A3C F;  3HOY F;  5IPL E;  4Y7N F;  5BYH E;  4LJZ E;  3I4M F;  2JA5 F;  5C4J F;  4OIO E;  4G7Z E;  3RZO F;  3GTK F;  2Y0S I;  4OIP E;  3GTQ F;  2JA8 F;  2E2H F;  3CQZ F;  1Y1W F;  1TWH F;  5C44 F;  4X6A F;  4Q5S E;  4XLN E;  4C3I F;  4LK1 E;  3H3V G;  4G7O E;  1HQM E;  2JA7 F;  4BY7 F;  3M3Y F;  2A6E E;  3S1R F;  4LLG E;  2NVT F;  4BY1 F;  5IP7 F;  3S1M F;  3GTL F;  3S2D F;  3RZD F;  4A3E F;  4Q4Z E;  2R93 F;  2NVQ F;  1YNJ K;  1ZYR E;  2WAQ K;  1I6V E;  3FKI F;  4KMU E;  2JA6 F;  4LK0 E;  5D4D E;  1TWF F;  2A69 E;  4A3I F;  3S14 F;  4GZY E;  1Y1V F;  1YNN K;  2PPB E;  2R7Z F;  4XSZ E;  1TWA F;  5TMF E;  4YFN E;  3PO3 F;  5IP9 F;  5D4C E;  5M5X F;  1IW7 E;  4A3F F;  2NVX F;  3GTP F;  4A3D F;  3HKZ K;  3S17 F;  4MEX E;  4YG2 E;  1QKL A;  4A3L F;  2PMZ K;  3S1Q F;  2CW0 E;  3S1N F;  4Y52 F;  3WOD E;  3EQL E;  4AYB K;  2YU9 F; 
#chains in the Genus database with same CATH topology
 4A3K E;  1R9T F;  2R92 F;  5IP7 E;  5TMC E;  4A3B F;  3S1M E;  3GTL E;  3HOW E;  5C3E F;  4YFX E;  3GTO F;  1I50 F;  4A93 F;  3HOU F;  3DXJ E;  3PO2 F;  3GTM E;  5IYD E;  4C3J E;  5C4X E;  2KRX A;  3FKI E;  5M5W F;  2JA6 E;  4KN4 E;  3GTG E;  5IYC F;  3HOV F;  1SFO F;  3S2H F;  3HOZ E;  5C4X F;  5E18 E;  5M3M F;  4BXX F;  2NVY F;  4A3C E;  3HOY E;  3I4M E;  3HOX F;  2JA5 E;  1TWC F;  5C4J E;  1TWA E;  1TWG F;  2Y0S H;  1I6H F;  3S16 F;  4MEY E;  2WB1 I;  5M3F F;  4KN7 E;  2A6H E;  3CQZ E;  3H3V F;  1TWH E;  5C44 E;  4X6A E;  4YFK E;  4JK1 E;  4A3M F;  3GTP E;  1DZF A;  4A3J F;  3S17 E;  4QIW H;  2JA7 E;  4BY7 E;  3M3Y E;  3S1R E;  3S2D E;  1SMY E;  4XLP E;  4A3L E;  2NVT E;  4BY1 E;  4XSX E;  4BBR F;  3I4N F;  1WCM F;  4G7H E;  4C3H F;  3RZD E;  1I3Q F;  3M4O F;  3H0G F;  4A3E E;  3K7A F;  2VUM F;  3RZO E;  3M4O E;  2A68 E;  4BBS F;  2YU9 E;  2R93 E;  2NVQ E;  5E17 E;  5M5Y F;  1EIK A;  4A3G F;  3S15 F;  4OIN E;  4OIQ E;  1TWF E;  1K83 F;  4A3I E;  3S14 E;  2E2I F;  4MQ9 E;  5IYB F;  5FLM F;  5FJ8 F;  5D4E E;  4ZH4 E;  1Y1V E;  3PO2 E;  4C2M F;  2O5J E;  2R7Z E;  4A3K F;  2B63 F;  3S2H E;  1SFO E;  3HOW F;  2NVY E;  3PO3 E;  5IP9 E;  3GTM F;  5IYD F;  4C3J F;  1TWC E;  5M5X E;  3GTJ F;  2O5I E;  4A3F E;  2E2J F;  4QIW K;  1TWG E;  2NVX E;  3GTG F;  4OIR E;  3S16 E;  3HOZ F;  4A3D E;  1I6H E;  4G7O E;  2BE5 E;  4A3C F;  3HOY F;  5IPL E;  3S1Q E;  4Y7N F;  5BYH E;  4LJZ E;  3I4M F;  3S1N E;  4A3D F;  2JA5 F;  5C4J F;  4OIO E;  4G7Z E;  3RZO F;  3GTK F;  2Y0S I;  4A3J E;  4OIP E;  3GTQ F;  2JA8 F;  4Y52 E;  2E2H F;  3CQZ F;  1Y1W F;  1TWH F;  1R9T E;  2R92 E;  5C44 F;  4X6A F;  4Q5S E;  4A3B E;  4XLN E;  3I4N E;  4C3I F;  4C3H E;  4LK1 E;  5C3E E;  2VUM E;  3K7A E;  3H3V G;  1I50 E;  1HQM E;  3GTO E;  2JA7 F;  3HOU E;  4A93 E;  3HKZ H;  4BY7 F;  2A6E E;  5M5Y E;  3S1R F;  3M3Y F;  4LLG E;  5M5W E;  2NVT F;  4BY1 F;  5IP7 F;  5IYC E;  3HOV E;  1K83 E;  3S1M F;  3GTL F;  3S2D F;  3RZD F;  2E2I E;  5M3M E;  4A3E F;  4BXX E;  5FJ8 E;  4Q4Z E;  2R93 F;  3HOX E;  1YNJ K;  2NVQ F;  4AYB H;  1ZYR E;  2WAQ K;  1I6V E;  3FKI F;  4KMU E;  2B63 E;  2JA6 F;  2WAQ H;  4LK0 E;  1TWF F;  2A69 E;  5D4D E;  4A3I F;  2WB1 H;  5M3F E;  3S14 F;  4GZY E;  1Y1V F;  1YNN K;  3GTJ E;  2PPB E;  4A3M E;  2R7Z F;  2E2J E;  4XSZ E;  1TWA F;  5TMF E;  4YFN E;  3PO3 F;  5IP9 F;  4Y7N E;  5D4C E;  4BBR E;  1WCM E;  5M5X F;  1IW7 E;  1I3Q E;  4A3F F;  3H0G E;  2NVX F;  3GTP F;  3HKZ K;  2JA8 E;  3GTK E;  3GTQ E;  3S17 F;  2E2H E;  4BBS E;  4MEX E;  4YG2 E;  1Y1W E;  1QKL A;  4A3G E;  3S15 E;  4A3L F;  2PMZ K;  3S1Q F;  2CW0 E;  4C3I E;  2PMZ H;  2YU9 F;  3S1N F;  5IYB E;  5FLM E;  4Y52 F;  3WOD E;  3EQL E;  4AYB K;  4C2M E; 
#chains in the Genus database with same CATH homology
 1R9T F;  2R92 F;  5TMC E;  4A3B F;  5C3E F;  4YFX E;  3GTO F;  1I50 F;  4A93 F;  3HOU F;  3DXJ E;  3PO2 F;  2KRX A;  5M5W F;  3HOV F;  4KN4 E;  5IYC F;  3S2H F;  1SFO F;  5E18 E;  5M3M F;  4BXX F;  2NVY F;  3HOX F;  1TWC F;  1TWG F;  1I6H F;  3S16 F;  4MEY E;  2WB1 I;  5M3F F;  4KN7 E;  2A6H E;  4YFK E;  4JK1 E;  4A3M F;  4A3J F;  1SMY E;  4XLP E;  4XSX E;  4BBR F;  3I4N F;  1WCM F;  4G7H E;  4C3H F;  1I3Q F;  3M4O F;  3H0G F;  2VUM F;  3K7A F;  2A68 E;  4BBS F;  5E17 E;  5M5Y F;  4A3G F;  3S15 F;  4OIN E;  4OIQ E;  1K83 F;  2E2I F;  4MQ9 E;  5IYB F;  5FLM F;  5FJ8 F;  5D4E E;  4ZH4 E;  4C2M F;  2O5J E;  4A3K F;  2B63 F;  3HOW F;  3GTM F;  5IYD F;  4C3J F;  3GTJ F;  2O5I E;  5C4X F;  2E2J F;  4QIW K;  3GTG F;  4OIR E;  3HOZ F;  2BE5 E;  4A3C F;  3HOY F;  5IPL E;  4Y7N F;  5BYH E;  4LJZ E;  3I4M F;  2JA5 F;  5C4J F;  4OIO E;  4G7Z E;  3RZO F;  3GTK F;  2Y0S I;  4OIP E;  3GTQ F;  2JA8 F;  2E2H F;  3CQZ F;  1Y1W F;  1TWH F;  5C44 F;  4X6A F;  4Q5S E;  4XLN E;  4C3I F;  4LK1 E;  3H3V G;  4G7O E;  1HQM E;  2JA7 F;  4BY7 F;  3M3Y F;  2A6E E;  3S1R F;  4LLG E;  2NVT F;  4BY1 F;  5IP7 F;  3S1M F;  3GTL F;  3S2D F;  3RZD F;  4A3E F;  4Q4Z E;  2R93 F;  2NVQ F;  1YNJ K;  1ZYR E;  2WAQ K;  1I6V E;  3FKI F;  4KMU E;  2JA6 F;  4LK0 E;  5D4D E;  1TWF F;  2A69 E;  4A3I F;  3S14 F;  4GZY E;  1Y1V F;  1YNN K;  2PPB E;  2R7Z F;  4XSZ E;  1TWA F;  5TMF E;  4YFN E;  3PO3 F;  5IP9 F;  5D4C E;  5M5X F;  1IW7 E;  4A3F F;  2NVX F;  3GTP F;  4A3D F;  3HKZ K;  3S17 F;  4MEX E;  4YG2 E;  1QKL A;  4A3L F;  2PMZ K;  3S1Q F;  2CW0 E;  3S1N F;  4Y52 F;  3WOD E;  3EQL E;  4AYB K;  2YU9 F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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