4LN0A

Crystal structure of the vgll4-tead4 complex
Total Genus 51
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
221
structure length
213
Chain Sequence
STMGRSIASSKLWMLEFSAFLERYNKHLFVHISQSSPSYSDPYLETVDIRQIYDKFPEKKGGLKELFERGPSNAFFLVKFWADLNTNIDDSAFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVETEYARYENGHYLYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIYRLVK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription
molecule keywords Transcriptional enhancer factor TEF-3
publication title A Peptide Mimicking VGLL4 Function Acts as a YAP Antagonist Therapy against Gastric Cancer.
pubmed doi rcsb
source organism Mus musculus
total genus 51
structure length 213
sequence length 221
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17725 YBD YAP binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.80 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 Coagulation Factor XIII; Chain A, domain 1 4ln0A00
5EMVA 4RE1A 3JUAA 5HGUA 3L15A 4LN0A 5EMWA 3KYSA 5DQ8A 5DQEA
chains in the Genus database with same CATH superfamily
4ALRA 5ACJA 4D7UA 3JUAA 3UAMA 4LN0A 5EMWA 5HNPA 1KSHB 5ACIA 4RE1A 4ALQA 3ZUDA 5AA7A 3KYSA 4OY7A 2JHXA 4JHPB 1DS6B 5HGUA 1QVYA 5DQ8A 4ALEA 3EIIA 4JV6B 1DOAB 2BEMA 2JI0A 2YOYA 4GOKC 1KSGB 1FSTA 2BXWA 4D7VA 2YETA 5F2UA 2JHSA 5ACGA 4ALSA 5TB5B 5E80A 4MAHA 5E8FA 1KSJB 2LHSA 2VTCA 2JHWA 2JHYA 4EISA 1FT3A 5EMVA 4OY8A 1RHOA 1GDFA 4EISB 3RBQA 2JHZA 4JV8B 1FSOA 3EJAA 2YOWA 2JHUA 5L7KA 4B5QA 1HH4D 4JVFB 5ACHA 5FJQA 4ALTA 4JVBB 2BENA 4GBOA 2JHTA 5FOHA 2JHVA 3L15A 4F38B 5IJUA 4EIRA 4MAIA 5ACFA 1AJWA 3T5IA 3T5GB 3GQQA 5TARB 2YOXA 2XWXA 4OY6A 4QI8A 1FT0A 5HNOA 2R5OA 4A02A 5FTZA 4FMRA 4GOJC 4ALCA 5DQEA 1KMTA
chains in the Genus database with same CATH topology
5EMVA 4EISB 5HGUA 3L15A 5DQ8A 4EIRA 5ACJA 4MAIA 3EJAA 3JUAA 3EIIA 5ACFA 4LN0A 4B5QA 4D7VA 2YETA 4EISA 5ACHA 5EMWA 4QI8A 5ACGA 5ACIA 4RE1A 3ZUDA 4FMRA 4MAHA 5FOHA 2VTCA 3KYSA 5DQEA 4D7UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EMV A;  4RE1 A;  3JUA A;  5HGU A;  3L15 A;  4LN0 A;  5EMW A;  3KYS A;  5DQ8 A;  5DQE A; 
#chains in the Genus database with same CATH topology
 4ALR A;  5ACJ A;  4D7U A;  3JUA A;  3UAM A;  4LN0 A;  5EMW A;  5HNP A;  1KSH B;  5ACI A;  4RE1 A;  4ALQ A;  3ZUD A;  5AA7 A;  3KYS A;  4OY7 A;  2JHX A;  4JHP B;  1DS6 B;  5HGU A;  1QVY A;  5DQ8 A;  4ALE A;  3EII A;  4JV6 B;  1DOA B;  2BEM A;  2JI0 A;  2YOY A;  4GOK C;  1KSG B;  1FST A;  2BXW A;  4D7V A;  2YET A;  5F2U A;  2JHS A;  5ACG A;  4ALS A;  5TB5 B;  5E80 A;  4MAH A;  5E8F A;  1KSJ B;  2LHS A;  2VTC A;  2JHW A;  2JHY A;  4EIS A;  1FT3 A;  5EMV A;  4OY8 A;  1RHO A;  1GDF A;  4EIS B;  3RBQ A;  2JHZ A;  4JV8 B;  1FSO A;  3EJA A;  2YOW A;  2JHU A;  5L7K A;  4B5Q A;  1HH4 D;  4JVF B;  5ACH A;  5FJQ A;  4ALT A;  4JVB B;  2BEN A;  4GBO A;  2JHT A;  5FOH A;  2JHV A;  3L15 A;  4F38 B;  5IJU A;  4EIR A;  4MAI A;  5ACF A;  1AJW A;  3T5I A;  3T5G B;  3GQQ A;  5TAR B;  2YOX A;  2XWX A;  4OY6 A;  4QI8 A;  1FT0 A;  5HNO A;  2R5O A;  4A02 A;  5FTZ A;  4FMR A;  4GOJ C;  4ALC A;  5DQE A;  1KMT A; 
#chains in the Genus database with same CATH homology
 5EMV A;  4EIS B;  5HGU A;  3L15 A;  5DQ8 A;  4EIR A;  5ACJ A;  4MAI A;  3EJA A;  3JUA A;  3EII A;  5ACF A;  4LN0 A;  4B5Q A;  4D7V A;  2YET A;  4EIS A;  5ACH A;  5EMW A;  4QI8 A;  5ACG A;  5ACI A;  4RE1 A;  3ZUD A;  4FMR A;  4MAH A;  5FOH A;  2VTC A;  3KYS A;  5DQE A;  4D7U A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...