4LO4A

Apo ha-70
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
170
structure length
170
Chain Sequence
SDTIDLADGNYVVRRGDGWILSRQNQILGGSVISNGSTGIVGDLRVNDNAIPYYYPTPSFNEEYIKNNIQTVFTNFTEANQIPIGFEFSKTAPSNKNLYMYLQYTYIRYEIIKVLQHEIIERAVLYVPSLGYVKSIEFNPGEKINKDFYFLTNDKCILNEQFLYKKILET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of a Bimodular Botulinum Neurotoxin Complex Provides Insights into Its Oral Toxicity.
pubmed doi rcsb
molecule tags Protein transport
source organism Clostridium botulinum
molecule keywords HA-70
total genus 36
structure length 170
sequence length 170
ec nomenclature
pdb deposition date 2013-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03505 Clenterotox Clostridium enterotoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1750.20 Alpha Beta 2-Layer Sandwich hemolytic lectin cel-iii, domain 3 hemolytic lectin cel-iii, domain 3 4lo4A00
4EN8A 4EN7B 4LO6A 2ZOEB 4P5HA 2ZS6A 3WINE 4LO5A 4EN9B 2XH6A 4EN6B 3ZIWA 4LO4A 3WIND 2YHJA 4EN7A 2ZOEA 4EN8B 4LO6B 4EN9A 2ZS6B 4EN6A 3ZIXA 3AM2A 4LO5B 4LO4B
chains in the Genus database with same CATH superfamily
4EN8A 4EN7B 4LO6A 2ZOEB 4P5HA 2ZS6A 3WINE 2Z49A 4LO5A 4EN9B 3W9TA 2XH6A 4EN6B 3ZIWA 4LO4A 2YHJA 3WIND 1VCLA 4EN7A 2ZOEA 4EN8B 4LO6B 4EN9A 2ZS6B 4EN6A 3ZIXA 3AM2A 4LO5B 2Z48A 4LO4B
chains in the Genus database with same CATH topology
4EN8A 4EN7B 4LO6A 2ZOEB 4P5HA 2ZS6A 3WINE 4LO5A 4EN9B 2XH6A 4EN6B 3ZIWA 4LO4A 3WIND 2YHJA 4EN7A 2ZOEA 4EN8B 4LO6B 4EN9A 2ZS6B 4EN6A 3ZIXA 3AM2A 4LO5B 4LO4B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EN8 A;  4EN7 B;  4LO6 A;  2ZOE B;  4P5H A;  2ZS6 A;  3WIN E;  4LO5 A;  4EN9 B;  2XH6 A;  4EN6 B;  3ZIW A;  4LO4 A;  3WIN D;  2YHJ A;  4EN7 A;  2ZOE A;  4EN8 B;  4LO6 B;  4EN9 A;  2ZS6 B;  4EN6 A;  3ZIX A;  3AM2 A;  4LO5 B;  4LO4 B; 
#chains in the Genus database with same CATH topology
 4EN8 A;  4EN7 B;  4LO6 A;  2ZOE B;  4P5H A;  2ZS6 A;  3WIN E;  2Z49 A;  4LO5 A;  4EN9 B;  3W9T A;  2XH6 A;  4EN6 B;  3ZIW A;  4LO4 A;  2YHJ A;  3WIN D;  1VCL A;  4EN7 A;  2ZOE A;  4EN8 B;  4LO6 B;  4EN9 A;  2ZS6 B;  4EN6 A;  3ZIX A;  3AM2 A;  4LO5 B;  2Z48 A;  4LO4 B; 
#chains in the Genus database with same CATH homology
 4EN8 A;  4EN7 B;  4LO6 A;  2ZOE B;  4P5H A;  2ZS6 A;  3WIN E;  4LO5 A;  4EN9 B;  2XH6 A;  4EN6 B;  3ZIW A;  4LO4 A;  3WIN D;  2YHJ A;  4EN7 A;  2ZOE A;  4EN8 B;  4LO6 B;  4EN9 A;  2ZS6 B;  4EN6 A;  3ZIX A;  3AM2 A;  4LO5 B;  4LO4 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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