4LP7A

Crystal structure of the human metapneumovirus matrix protein
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
254
structure length
219
Chain Sequence
MESYLVDTYQGIPYTAAVQVDLIEKDLLPASLTIWFPLFQANTPPAVLLDQLKTLTITTLYAASQNGPILKVNASAQGAAMSVLPKKFEVNATVALDEYSKLEFDKLTVCEVKTVYLTTMKPYGKKTHDLIALCDFMDLEKNTPVTIPAFIKSVSIKEQALTQAKIAPYAGLIMIMTMNNPGAGTQVIVELGAYVQAESISKICKTWSHQGTRYVLKSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Calcium binding protein
molecule keywords Matrix protein M
publication title Structure and self-assembly of the calcium binding matrix protein of human metapneumovirus.
pubmed doi rcsb
source organism Human metapneumovirus
total genus 41
structure length 219
sequence length 254
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03393 Pneumo_matrix Pneumovirus matrix protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.20.30 Mainly Beta Distorted Sandwich Topoisomerase I; domain 3 Topoisomerase I; domain 3 4lp7A01
2YKDA 4V23A 4LP7A 2VQPA 4D4TA
chains in the Genus database with same CATH superfamily
1D6MA 2GAIA 2GAJA 5D5HA 4HIWA 4HITA 4G1OA 2O54A 4V23A 4CGYA 4LD8A 3PWTA 1CY9A 5B0VA 2O59A 2VQPA 1CY7A 1CY4A 1I7DA 4LDMA 1MW9X 3F1JA 4LP7A 3TCQA 1CY2A 4HIUA 4RULA 1ECLA 1CY8A 4HI5A 1ES6A 1H2CA 1CY0A 2O19A 2O5CA 1CYYA 1CY1A 4CHTA 3PX7A 4D4TA 4G1GA 2O5EA 2YKDA 1CY6A 1H2DA 4HIYA 1MW8X 4LDDA 4HI6A 4G1LA 4LDBA
chains in the Genus database with same CATH topology
4HIWA 4HITA 4G1OA 4V23A 4LD8A 5B0VA 2VQPA 4LDMA 3F1JA 4LP7A 3TCQA 4HIUA 4HI5A 1ES6A 1H2CA 4D4TA 4G1GA 2YKDA 1H2DA 4HIYA 4LDDA 4HI6A 4G1LA 4LDBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YKD A;  4V23 A;  4LP7 A;  2VQP A;  4D4T A; 
#chains in the Genus database with same CATH topology
 1D6M A;  2GAI A;  2GAJ A;  5D5H A;  4HIW A;  4HIT A;  4G1O A;  2O54 A;  4V23 A;  4CGY A;  4LD8 A;  3PWT A;  1CY9 A;  5B0V A;  2O59 A;  2VQP A;  1CY7 A;  1CY4 A;  1I7D A;  4LDM A;  1MW9 X;  3F1J A;  4LP7 A;  3TCQ A;  1CY2 A;  4HIU A;  4RUL A;  1ECL A;  1CY8 A;  4HI5 A;  1ES6 A;  1H2C A;  1CY0 A;  2O19 A;  2O5C A;  1CYY A;  1CY1 A;  4CHT A;  3PX7 A;  4D4T A;  4G1G A;  2O5E A;  2YKD A;  1CY6 A;  1H2D A;  4HIY A;  1MW8 X;  4LDD A;  4HI6 A;  4G1L A;  4LDB A; 
#chains in the Genus database with same CATH homology
 4HIW A;  4HIT A;  4G1O A;  4V23 A;  4LD8 A;  5B0V A;  2VQP A;  4LDM A;  3F1J A;  4LP7 A;  3TCQ A;  4HIU A;  4HI5 A;  1ES6 A;  1H2C A;  4D4T A;  4G1G A;  2YKD A;  1H2D A;  4HIY A;  4LDD A;  4HI6 A;  4G1L A;  4LDB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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