4LQEA

Crystal structure of mepb
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
149
structure length
148
Chain Sequence
MYKSKILLKYIFSEESEVKDLTEEKYNQDYEALTFSFKEETYQSRLAKKTPTKAGYFVTCWTKDENNCNQPYSKEAFADYLMIIVIDEELSGYFLFPRELLVEKGILTTFEHKGKMAFRVYPKWNQLNKTAGQTQKWQCKYFLNTNKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords MepB
publication title Structural characterization of MepB from Staphylococcus aureus reveals homology to endonucleases.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 34
structure length 148
sequence length 149
ec nomenclature
pdb deposition date 2013-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08877 MepB MepB protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.140 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 4lqeA00
4LQEA
chains in the Genus database with same CATH superfamily
2ZYZB 3AJVB 4LQEA 4DA2A 2OSTA 3FOVA 1YNMA 1RZNA 1IPIA 1T0FA 1Y88A 1UWVA 1OB8A 3P1ZA 5FDKA 1ZP7A 2ZYZA 2DBSA 2FCOA 2INBA 2WCZA 3AJVA 2EO0A 2WJ0A 4G6VA 1OB9A 3IEYB 2FLCA 4G6UA 4QBOA 4EV1A 4QBLA 4QBNA 1Y1OA 2CV8A 4DAVA 2WIZA 2FKCA 2FL3A 1HH1A 2WCWA 2JJQA 4TKDA 4E6ZA 1R11A 1R0VA 2W8MA 2Z0RA 3IEYA 2WIWA 3P1YA 4ZQUA 2FKHB 1GEFA 1XMXA 1F1ZA 2BH2A 1A79A 2GW6A 3BT7A 2VS1A 2CZRA 4TKKA 4DAPA 2IXSA 3P1ZB 2VLDA 2OKFA 1RLVA 3IF0X 2GJWA 3DNXA
chains in the Genus database with same CATH topology
2ZYZB 3AJVB 4LQEA 4DA2A 2OSTA 3FOVA 1YNMA 1RZNA 1IPIA 1T0FA 1Y88A 1UWVA 1OB8A 3P1ZA 5FDKA 1ZP7A 2ZYZA 2DBSA 2FCOA 2INBA 2WCZA 3AJVA 2EO0A 2WJ0A 4G6VA 1OB9A 3IEYB 2FLCA 4G6UA 4QBOA 4EV1A 4QBLA 4QBNA 1Y1OA 2CV8A 4DAVA 2WIZA 2FKCA 2FL3A 1HH1A 2WCWA 2JJQA 4TKDA 4E6ZA 1R11A 1R0VA 2W8MA 2Z0RA 3IEYA 2WIWA 3P1YA 4ZQUA 2FKHB 1GEFA 1XMXA 1F1ZA 2BH2A 1A79A 2GW6A 3BT7A 2VS1A 2CZRA 4TKKA 4DAPA 2IXSA 3P1ZB 2VLDA 2OKFA 1RLVA 3IF0X 2GJWA 3DNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LQE A; 
#chains in the Genus database with same CATH topology
 2ZYZ B;  3AJV B;  4LQE A;  4DA2 A;  2OST A;  3FOV A;  1YNM A;  1RZN A;  1IPI A;  1T0F A;  1Y88 A;  1UWV A;  1OB8 A;  3P1Z A;  5FDK A;  1ZP7 A;  2ZYZ A;  2DBS A;  2FCO A;  2INB A;  2WCZ A;  3AJV A;  2EO0 A;  2WJ0 A;  4G6V A;  1OB9 A;  3IEY B;  2FLC A;  4G6U A;  4QBO A;  4EV1 A;  4QBL A;  4QBN A;  1Y1O A;  2CV8 A;  4DAV A;  2WIZ A;  2FKC A;  2FL3 A;  1HH1 A;  2WCW A;  2JJQ A;  4TKD A;  4E6Z A;  1R11 A;  1R0V A;  2W8M A;  2Z0R A;  3IEY A;  2WIW A;  3P1Y A;  4ZQU A;  2FKH B;  1GEF A;  1XMX A;  1F1Z A;  2BH2 A;  1A79 A;  2GW6 A;  3BT7 A;  2VS1 A;  2CZR A;  4TKK A;  4DAP A;  2IXS A;  3P1Z B;  2VLD A;  2OKF A;  1RLV A;  3IF0 X;  2GJW A;  3DNX A; 
#chains in the Genus database with same CATH homology
 2ZYZ B;  3AJV B;  4LQE A;  4DA2 A;  2OST A;  3FOV A;  1YNM A;  1RZN A;  1IPI A;  1T0F A;  1Y88 A;  1UWV A;  1OB8 A;  3P1Z A;  5FDK A;  1ZP7 A;  2ZYZ A;  2DBS A;  2FCO A;  2INB A;  2WCZ A;  3AJV A;  2EO0 A;  2WJ0 A;  4G6V A;  1OB9 A;  3IEY B;  2FLC A;  4G6U A;  4QBO A;  4EV1 A;  4QBL A;  4QBN A;  1Y1O A;  2CV8 A;  4DAV A;  2WIZ A;  2FKC A;  2FL3 A;  1HH1 A;  2WCW A;  2JJQ A;  4TKD A;  4E6Z A;  1R11 A;  1R0V A;  2W8M A;  2Z0R A;  3IEY A;  2WIW A;  3P1Y A;  4ZQU A;  2FKH B;  1GEF A;  1XMX A;  1F1Z A;  2BH2 A;  1A79 A;  2GW6 A;  3BT7 A;  2VS1 A;  2CZR A;  4TKK A;  4DAP A;  2IXS A;  3P1Z B;  2VLD A;  2OKF A;  1RLV A;  3IF0 X;  2GJW A;  3DNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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