4LS9A

Structure of mycobacterial nrna homolog reveals multifunctional nuclease activities
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
319
structure length
319
Chain Sequence
GARVDARGAADLLTAASSVSVICHVYPDADTIGAGLALAQVLAASGKHVEVSFATPAQLPESLQSLPGGHLLVAPEAMRRDADLVVTVDIPSINRLGALSGLAGPGREVLVIDHHASNQLFGTANYIDPSADSTTMLVAELLDAWGKPIDEKVAHCLYAGLTTDTGSFRWATARAHRLAARLVELGVDNASISRTLLDTHPFAWLPMLSRVLATARLLPDALDGRGFVYAVVPHDEWSEARPEEVESIVDIVRTTQQAEVAAVFKEIEPMHWSVSMRAKSVNLASVASAFGGGGHPHAAGYSATGSADDVVQALARALG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DHH family protein
publication title Unique subunit packing in mycobacterial nanoRNase leads to alternate substrate recognitions in DHH phosphodiesterases
pubmed doi rcsb
source organism Mycobacterium smegmatis
total genus 105
structure length 319
sequence length 319
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.30 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4ls9A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 4ls9A01
1IR6A 3W5WA 2ZXOA 2HAWA 1WPMA 2QB6A 2ENXA 1K20A 3DEVA 1K23A 2ZXRA 2EB0A 4RPAA 2QB8A 4LS9A 1WPNA 1WPPA 2ZXPA 1I74A 4PY9A 2IW4A 2QB7A
chains in the Genus database with same CATH superfamily
1IR6A 3ICJA 3W5WA 3PW9A 5GL2A 2Q9HA 4GL6A 1U1XA 5IWEA 3WQZA 4FC5A 2QB8A 5GL4A 1W61A 4JUUA 4LS9A 2KW7A 1QY9A 1TM0A 1U1VA 4DUNA 4J9XA 1U1WA 2ZXOA 1W62A 5GL3A 2GKJA 1GQZA 2KPTA 1K20A 1K23A 2EB0A 1SDJA 1S7JA 3PVHA 3IGHX 2Q9JA 2PVZA 1QYAA 2AZPA 1T6KA 4JCIA 2ZXPA 4K8LA 5HA4A 3G98A 2QB7A 1YM5A 2OTNA 3EKMA 2HAWA 1WPMA 2MPBA 4OA3A 2ENXA 2QB6A 3G7KA 4Q2HA 1XUBA 2H9FA 4LG3A 2ZXRA 3EDNA 4RPAA 3FVEA 2ZVFA 4K7GB 4Q60A 1WPPA 1I74A 4JD7A 4PY9A 5H2YA 5ANPA 5GKXA 1U0KA 5H2GA 1XUAA 2GKEA 2YMAA 3DEVA 3PTJA 4LB0A 4DWZA 4IJZA 2PW0A 4K7XA 1WPNA 4JBDA 1BWZA 2LT2A 3EJXA 4J9WA 4IK0A 5M47A 2IW4A
chains in the Genus database with same CATH topology
1IR6A 3ICJA 3W5WA 3PW9A 5GL2A 2Q9HA 4GL6A 1U1XA 5IWEA 3WQZA 4FC5A 2QB8A 5GL4A 1W61A 4JUUA 4LS9A 2KW7A 1QY9A 1TM0A 1U1VA 4DUNA 4J9XA 1U1WA 2ZXOA 1W62A 5GL3A 2GKJA 1GQZA 2KPTA 1K20A 1K23A 2EB0A 1SDJA 1S7JA 3PVHA 3IGHX 2Q9JA 2PVZA 1QYAA 2AZPA 1T6KA 4JCIA 2ZXPA 4K8LA 5HA4A 3G98A 2QB7A 1YM5A 2OTNA 3EKMA 2HAWA 1WPMA 2MPBA 4OA3A 2ENXA 2QB6A 3G7KA 4Q2HA 1XUBA 2H9FA 4LG3A 2ZXRA 3EDNA 4RPAA 3FVEA 2ZVFA 4K7GB 4Q60A 1WPPA 1I74A 4JD7A 4PY9A 5H2YA 5ANPA 5GKXA 1U0KA 5H2GA 1XUAA 2GKEA 2YMAA 3DEVA 3PTJA 4LB0A 4DWZA 4IJZA 2PW0A 4K7XA 1WPNA 4JBDA 1BWZA 2LT2A 3EJXA 4J9WA 4IK0A 5M47A 2IW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IR6 A;  3W5W A;  2ZXO A;  2HAW A;  1WPM A;  2QB6 A;  2ENX A;  1K20 A;  3DEV A;  1K23 A;  2ZXR A;  2EB0 A;  4RPA A;  2QB8 A;  4LS9 A;  1WPN A;  1WPP A;  2ZXP A;  1I74 A;  4PY9 A;  2IW4 A;  2QB7 A; 
#chains in the Genus database with same CATH topology
 1IR6 A;  3ICJ A;  3W5W A;  3PW9 A;  5GL2 A;  2Q9H A;  4GL6 A;  1U1X A;  5IWE A;  3WQZ A;  4FC5 A;  2QB8 A;  5GL4 A;  1W61 A;  4JUU A;  4LS9 A;  2KW7 A;  1QY9 A;  1TM0 A;  1U1V A;  4DUN A;  4J9X A;  1U1W A;  2ZXO A;  1W62 A;  5GL3 A;  2GKJ A;  1GQZ A;  2KPT A;  1K20 A;  1K23 A;  2EB0 A;  1SDJ A;  1S7J A;  3PVH A;  3IGH X;  2Q9J A;  2PVZ A;  1QYA A;  2AZP A;  1T6K A;  4JCI A;  2ZXP A;  4K8L A;  5HA4 A;  3G98 A;  2QB7 A;  1YM5 A;  2OTN A;  3EKM A;  2HAW A;  1WPM A;  2MPB A;  4OA3 A;  2ENX A;  2QB6 A;  3G7K A;  4Q2H A;  1XUB A;  2H9F A;  4LG3 A;  2ZXR A;  3EDN A;  4RPA A;  3FVE A;  2ZVF A;  4K7G B;  4Q60 A;  1WPP A;  1I74 A;  4JD7 A;  4PY9 A;  5H2Y A;  5ANP A;  5GKX A;  1U0K A;  5H2G A;  1XUA A;  2GKE A;  2YMA A;  3DEV A;  3PTJ A;  4LB0 A;  4DWZ A;  4IJZ A;  2PW0 A;  4K7X A;  1WPN A;  4JBD A;  1BWZ A;  2LT2 A;  3EJX A;  4J9W A;  4IK0 A;  5M47 A;  2IW4 A; 
#chains in the Genus database with same CATH homology
 1IR6 A;  3ICJ A;  3W5W A;  3PW9 A;  5GL2 A;  2Q9H A;  4GL6 A;  1U1X A;  5IWE A;  3WQZ A;  4FC5 A;  2QB8 A;  5GL4 A;  1W61 A;  4JUU A;  4LS9 A;  2KW7 A;  1QY9 A;  1TM0 A;  1U1V A;  4DUN A;  4J9X A;  1U1W A;  2ZXO A;  1W62 A;  5GL3 A;  2GKJ A;  1GQZ A;  2KPT A;  1K20 A;  1K23 A;  2EB0 A;  1SDJ A;  1S7J A;  3PVH A;  3IGH X;  2Q9J A;  2PVZ A;  1QYA A;  2AZP A;  1T6K A;  4JCI A;  2ZXP A;  4K8L A;  5HA4 A;  3G98 A;  2QB7 A;  1YM5 A;  2OTN A;  3EKM A;  2HAW A;  1WPM A;  2MPB A;  4OA3 A;  2ENX A;  2QB6 A;  3G7K A;  4Q2H A;  1XUB A;  2H9F A;  4LG3 A;  2ZXR A;  3EDN A;  4RPA A;  3FVE A;  2ZVF A;  4K7G B;  4Q60 A;  1WPP A;  1I74 A;  4JD7 A;  4PY9 A;  5H2Y A;  5ANP A;  5GKX A;  1U0K A;  5H2G A;  1XUA A;  2GKE A;  2YMA A;  3DEV A;  3PTJ A;  4LB0 A;  4DWZ A;  4IJZ A;  2PW0 A;  4K7X A;  1WPN A;  4JBD A;  1BWZ A;  2LT2 A;  3EJX A;  4J9W A;  4IK0 A;  5M47 A;  2IW4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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