4LSYA

Crystal structure of copper-bound l66s mutant toxin from helicobacter pylori
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
88
structure length
88
Chain Sequence
MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVSLVYLVKDDELILLRLGSHSELF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Uncharacterized protein, Toxin
publication title Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity
pubmed doi rcsb
source organism Helicobacter pylori
total genus 26
structure length 88
sequence length 88
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05016 ParE_toxin ParE toxin of type II toxin-antitoxin system, parDE
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 4lsyA00
3KXEA 4ML2A 4NRNA 5IXLA 3G5OB 2KC8A 2KHEA 2A6SA 5CZEB 4ML0B 2KC9A 4FXED 4FXHA 5CZFC 4Q2UB 4MCTB 4MMGA 4FXIA 4LTTA 4MMJA 5CEGB 5CW7B 4MCXB 1WMIA 4LSYA 4PX8A 4YY3Y 2A6RA 2A6QE 4LS4A 5IWHA 1Z8MA 2OTRA 3BPQB 3OEIC
chains in the Genus database with same CATH superfamily
3KXEA 4ML2A 4NRNA 2DFXE 5IXLA 3G5OB 2KC8A 2KHEA 3AO9A 2A6SA 5CZEB 4ML0B 2KC9A 2A8KA 2FHZB 2PD0A 4FXED 4FXHA 2DJHA 5CZFC 4Q2UB 4MCTB 4MMGA 3VJ7A 4FXIA 1XQBA 4LTTA 4MMJA 5CEGB 5CW7B 4FBDA 4MCXB 3HI2B 1WMIA 4LSYA 4PX8A 4YY3Y 2A6RA 2A6QE 4LS4A 5IWHA 1Z8MA 2OTRA 3BPQB 3OEIC
chains in the Genus database with same CATH topology
3KXEA 4ML2A 4NRNA 5IXLA 3G5OB 2KC8A 2KHEA 2A6SA 5CZEB 4ML0B 2KC9A 4FXED 4FXHA 5CZFC 4Q2UB 4MCTB 4MMGA 4FXIA 4LTTA 4MMJA 5CEGB 5CW7B 4MCXB 1WMIA 4LSYA 4PX8A 4YY3Y 2A6RA 2A6QE 4LS4A 5IWHA 1Z8MA 2OTRA 3BPQB 3OEIC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KXE A;  4ML2 A;  4NRN A;  5IXL A;  3G5O B;  2KC8 A;  2KHE A;  2A6S A;  5CZE B;  4ML0 B;  2KC9 A;  4FXE D;  4FXH A;  5CZF C;  4Q2U B;  4MCT B;  4MMG A;  4FXI A;  4LTT A;  4MMJ A;  5CEG B;  5CW7 B;  4MCX B;  1WMI A;  4LSY A;  4PX8 A;  4YY3 Y;  2A6R A;  2A6Q E;  4LS4 A;  5IWH A;  1Z8M A;  2OTR A;  3BPQ B;  3OEI C; 
#chains in the Genus database with same CATH topology
 3KXE A;  4ML2 A;  4NRN A;  2DFX E;  5IXL A;  3G5O B;  2KC8 A;  2KHE A;  3AO9 A;  2A6S A;  5CZE B;  4ML0 B;  2KC9 A;  2A8K A;  2FHZ B;  2PD0 A;  4FXE D;  4FXH A;  2DJH A;  5CZF C;  4Q2U B;  4MCT B;  4MMG A;  3VJ7 A;  4FXI A;  1XQB A;  4LTT A;  4MMJ A;  5CEG B;  5CW7 B;  4FBD A;  4MCX B;  3HI2 B;  1WMI A;  4LSY A;  4PX8 A;  4YY3 Y;  2A6R A;  2A6Q E;  4LS4 A;  5IWH A;  1Z8M A;  2OTR A;  3BPQ B;  3OEI C; 
#chains in the Genus database with same CATH homology
 3KXE A;  4ML2 A;  4NRN A;  5IXL A;  3G5O B;  2KC8 A;  2KHE A;  2A6S A;  5CZE B;  4ML0 B;  2KC9 A;  4FXE D;  4FXH A;  5CZF C;  4Q2U B;  4MCT B;  4MMG A;  4FXI A;  4LTT A;  4MMJ A;  5CEG B;  5CW7 B;  4MCX B;  1WMI A;  4LSY A;  4PX8 A;  4YY3 Y;  2A6R A;  2A6Q E;  4LS4 A;  5IWH A;  1Z8M A;  2OTR A;  3BPQ B;  3OEI C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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