4LUFA

Crystal structure of ovine serum albumin
Total Genus 246
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
246
sequence length
583
structure length
583
Chain Sequence
DTHKSEIAHRFNDLGEENFQGLVLIAFSQYLQQCPFDEHVKLVKELTEFAKTCVADESHAGCDKSLHTLFGDELCKVATLRETYGDMADCCEKQEPERNECFLNHKDDSPDLPKLKPEPDTLCAEFKADEKKFWGKYLYEVARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIDAMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKADFTDVTKIVTDLTKVHKECCHGDLLECADDRADLAKYICDHQDALSSKLKECCDKPVLEKSHCIAEVDKDAVPENLPPLTADFAEDKEVCKNYQEAKDVFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEDCCAKEDPHACYATVFDKLKHLVDEPQNLIKKNCELFEKHGEYGFQNALIVRYTRKAPQVSTPTLVEISRSLGKVGTKCCAKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSDLTLDETYVPKPFDEKFFTFHADICTLPDTEKQIKKQTALVELLKHKPKATDEQLKTVMENFVAFVDKCCAADDKEGCFVLEGPKLVASTQAALA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Serum albumin
publication title Crystal structure of ovine serum albumin and its complex with 3,5-diiodosalicylic acid
rcsb
molecule tags Transport protein
total genus 246
structure length 583
sequence length 583
ec nomenclature
pdb deposition date 2013-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00273 Serum_albumin Serum albumin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4lufA03
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4lufA02
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4lufA04
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4lufA01
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4lufA06
1.10.246.10 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4lufA05
4N0FD 4HGMB 1E78A 4L9KA 2BXLA 3JRYA 4JK4A 4E99A 4BKEA 5IIHA 1E7AA 4S1YA 4ZBQA 5ID9A 2BXGA 1H9ZA 1HK4A 1LOTA 2BXOA 4LUFA 1GNIA 2BX8A 1E7FA 3A73A 2BXBA 5FUOA 1E7BA 4HGKA 3V09A 1GNJA 4F5TA 5IIXA 2XVUA 1O9XA 3JQZA 4EMXA 1J7EA 4LA0A 3LU7A 3UIVA 4Z69A 4OT2A 1E7HA 1HK1A 4G04A 5DBYA 4F5VA 3V08A 1J78A 4K71A 4N0UD 4K2CA 1KXPD 4J2VA 3V03A 1BKEA 2I2ZA 4LB2A 5ID7A 3CX9A 2BXKA 4OR0A 4F5SA 3SQJA 2VDBA 2BXCA 4IW2A 4PO0A 5IFOA 1E7GA 2VUFA 2BXDA 1HK5A 5IIUA 5IJFA 5IJEA 1E7CA 2XVWA 1UORA 2XW1A 1HK3A 2XW0A 2BXNA 2BXIA 2XSIA 1HK2A 3B9MA 1KW2A 1BM0A 1BJ5A 2BXQA 4L9QA 2VUEA 5GHKA 2XVQA 5HOZA 4G03A 5DQFA 1N5UA 3TDLA 1AO6A 3LU6A 4LB9A 5IJ5A 4F5UA 4IW1A 1E7IA 3LU8A 3B9LA 4L8UA 4LUHA 2BXHA 4ZBRA 2YDFA 1TF0A 2I30A 1E7EA 1MA9A 2XVVA 2BXEA 1HA2A 2BXFA 2BXAA 2BXPA 2BXMA
chains in the Genus database with same CATH superfamily
3PLAA 4N0FD 2Z8IA 1MUSA 4ZC6A 2DYMA 4GDXA 1E78A 2CKXA 4HGMB 3WHRA 3H37A 3H3AA 4L9KA 2BXLA 2EFHA 3W1SA 1IJGA 3JRYA 2E0XA 4GDKB 4JK4A 4ZCGA 4BKEA 4E99A 5IIHA 5B5TA 3WHQA 2EFDA 1FOUA 3ECPA 2AJEA 1E7AA 5GIPA 4DM0A 4S1YA 4ZBQA 4TQ0A 5ID9A 2BXGA 4BY9C 1H9ZA 4TQ1A 1HK4A 1LOTA 2BXOA 2KBZA 4LUFA 2LXSA 4N3ZA 1GNIA 3GQUA 3SIVB 2BX8A 4I9OA 4W4UB 3MHSB 4FIPB 1E7FA 3A73A 2BXBA 1MM8A 5FUOA 1E7BA 4HGKA 3V09A 2LQIA 1GNJA 4F5TA 5IIXA 4M70B 2LQHA 2QM6A 2XVUA 1O9XA 3JQZA 4EMXA 3NVMA 3NVKA 1VFIA 2ROHA 1J7EA 2DYOA 4LA0A 3NVIA 3LU7A 3G9KD 2XMOA 3FNMA 3UIVA 1LNSA 4Z69A 4OT2A 1E7HA 1HK1A 4G04A 5DBYA 4F5VA 4ZBKA 1MIWA 4GG2A 1J78A 4K71A 4N0UD 2AGHB 3V08A 3NMUA 4OTTA 3WHSA 2NQOA 4K2CA 1KDXA 1KXPD 4J2VA 3V03A 4DHXB 3KJLA 1BKEA 3MHHB 4FK5B 1TXUA 2I2ZA 4LB2A 5ID7A 2LXTA 3CX9A 2BXKA 4OR0A 1MUHA 4F5SA 3FWCC 3SQJA 2VDBA 2BXCA 1JNBA 3BPJA 2OT3A 1E7GA 2DG5A 2VUFA 4IW2A 4PO0A 2BXDA 5IFOA 1HK5A 5IIUA 2LOQA 5IJFA 5IJEA 3M99C 1E7CA 4Z9OA 2XVWA 5GIOA 1UORA 3GQXA 5GINA 2XW1A 1HK3A 2XW0A 2BXNA 2BXIA 2DBXA 2QMCA 5D7GA 2E0YA 2XSIA 4C31B 1HK2A 2Z8KA 3FWBC 3B9MA 1KW2A 2GUTA 2K0NA 1BM0A 1BJ5A 1VZSA 2BXQA 2EFCA 4L9QA 2VUEA 5GHKA 5BPKA 4MBEC 4D7XA 1SB0A 2XVQA 5HOZA 1NT2B 4G03A 5DQFA 3VQIA 4NAWB 1N5UA 2Z8JA 3TDLA 1AO6A 3GA9L 1MIVA 1H5WA 3LU6A 4LB9A 3SIUB 5IJ5A 2DBWA 3A75A 4F5UA 3KIKA 4IW1A 1E7IA 2NNWA 3B9LA 2EFEA 3LU8A 2DBUA 4L8UA 4LUHA 4WA6B 2BXHA 4ZBRA 4GDLB 2JUHA 2YDFA 3ICXA 2KWFA 2V36A 4G01A 4OTUA 1TF0A 2I30A 1E7EA 2OZBB 1MA9A 2XVVA 2QHBA 2BXEA 1HA2A 2BXFA 2BXAA 4FJCB 2BXPA 4ZUXV 1MIYA 2BXMA
chains in the Genus database with same CATH topology
3PLAA 4N0FD 2Z8IA 4ZC6A 2DYMA 4GDXA 1E78A 2CKXA 4HGMB 3WHRA 3H37A 3H3AA 4L9KA 2BXLA 2EFHA 3W1SA 1IJGA 3JRYA 2E0XA 4GDKB 4JK4A 4ZCGA 4BKEA 4E99A 5IIHA 5B5TA 3WHQA 2EFDA 1FOUA 2AJEA 1E7AA 5GIPA 4S1YA 4ZBQA 4TQ0A 5ID9A 2BXGA 4BY9C 1H9ZA 4TQ1A 1HK4A 1LOTA 2BXOA 2KBZA 4LUFA 4N3ZA 1GNIA 3GQUA 3SIVB 2BX8A 4W4UB 3MHSB 4FIPB 1E7FA 3A73A 2BXBA 5FUOA 1E7BA 4HGKA 3V09A 1GNJA 4F5TA 5IIXA 4M70B 2QM6A 2XVUA 1O9XA 3JQZA 4EMXA 3NVMA 3NVKA 1VFIA 2ROHA 1J7EA 2DYOA 4LA0A 3NVIA 3LU7A 3G9KD 2XMOA 3FNMA 3UIVA 1LNSA 4Z69A 4OT2A 1E7HA 1HK1A 4G04A 5DBYA 4F5VA 4ZBKA 1MIWA 4GG2A 1J78A 4K71A 4N0UD 3V08A 3NMUA 4OTTA 3WHSA 2NQOA 4K2CA 1KXPD 4J2VA 3V03A 4DHXB 3KJLA 1BKEA 3MHHB 4FK5B 1TXUA 2I2ZA 4LB2A 5ID7A 3CX9A 2BXKA 4OR0A 4F5SA 3FWCC 3SQJA 2VDBA 2BXCA 1JNBA 4IW2A 2OT3A 1E7GA 2DG5A 2VUFA 4PO0A 5IFOA 2BXDA 1HK5A 5IIUA 2LOQA 5IJFA 5IJEA 3M99C 1E7CA 4Z9OA 2XVWA 5GIOA 1UORA 3GQXA 5GINA 2XW1A 1HK3A 2XW0A 2BXNA 2BXIA 2DBXA 2QMCA 5D7GA 2E0YA 2XSIA 4C31B 1HK2A 2Z8KA 3FWBC 3B9MA 1KW2A 1BM0A 1BJ5A 1VZSA 2BXQA 2EFCA 4L9QA 2VUEA 5GHKA 5BPKA 4MBEC 2XVQA 5HOZA 1NT2B 4G03A 5DQFA 3VQIA 4NAWB 1N5UA 2Z8JA 3TDLA 1AO6A 3GA9L 1MIVA 1H5WA 3LU6A 4LB9A 3SIUB 5IJ5A 2DBWA 3A75A 4F5UA 3KIKA 4IW1A 1E7IA 2NNWA 3B9LA 2EFEA 3LU8A 2DBUA 4L8UA 4LUHA 4WA6B 2BXHA 4ZBRA 4GDLB 2JUHA 2YDFA 3ICXA 2V36A 4G01A 4OTUA 1TF0A 2I30A 1E7EA 2OZBB 1MA9A 2XVVA 2QHBA 2BXEA 1HA2A 2BXFA 2BXAA 4FJCB 2BXPA 4ZUXV 1MIYA 2BXMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N0F D;  4HGM B;  1E78 A;  4L9K A;  2BXL A;  3JRY A;  4JK4 A;  4E99 A;  4BKE A;  5IIH A;  1E7A A;  4S1Y A;  4ZBQ A;  5ID9 A;  2BXG A;  1H9Z A;  1HK4 A;  1LOT A;  2BXO A;  4LUF A;  1GNI A;  2BX8 A;  1E7F A;  3A73 A;  2BXB A;  5FUO A;  1E7B A;  4HGK A;  3V09 A;  1GNJ A;  4F5T A;  5IIX A;  2XVU A;  1O9X A;  3JQZ A;  4EMX A;  1J7E A;  4LA0 A;  3LU7 A;  3UIV A;  4Z69 A;  4OT2 A;  1E7H A;  1HK1 A;  4G04 A;  5DBY A;  4F5V A;  3V08 A;  1J78 A;  4K71 A;  4N0U D;  4K2C A;  1KXP D;  4J2V A;  3V03 A;  1BKE A;  2I2Z A;  4LB2 A;  5ID7 A;  3CX9 A;  2BXK A;  4OR0 A;  4F5S A;  3SQJ A;  2VDB A;  2BXC A;  4IW2 A;  4PO0 A;  5IFO A;  1E7G A;  2VUF A;  2BXD A;  1HK5 A;  5IIU A;  5IJF A;  5IJE A;  1E7C A;  2XVW A;  1UOR A;  2XW1 A;  1HK3 A;  2XW0 A;  2BXN A;  2BXI A;  2XSI A;  1HK2 A;  3B9M A;  1KW2 A;  1BM0 A;  1BJ5 A;  2BXQ A;  4L9Q A;  2VUE A;  5GHK A;  2XVQ A;  5HOZ A;  4G03 A;  5DQF A;  1N5U A;  3TDL A;  1AO6 A;  3LU6 A;  4LB9 A;  5IJ5 A;  4F5U A;  4IW1 A;  1E7I A;  3LU8 A;  3B9L A;  4L8U A;  4LUH A;  2BXH A;  4ZBR A;  2YDF A;  1TF0 A;  2I30 A;  1E7E A;  1MA9 A;  2XVV A;  2BXE A;  1HA2 A;  2BXF A;  2BXA A;  2BXP A;  2BXM A; 
#chains in the Genus database with same CATH topology
 3PLA A;  4N0F D;  2Z8I A;  1MUS A;  4ZC6 A;  2DYM A;  4GDX A;  1E78 A;  2CKX A;  4HGM B;  3WHR A;  3H37 A;  3H3A A;  4L9K A;  2BXL A;  2EFH A;  3W1S A;  1IJG A;  3JRY A;  2E0X A;  4GDK B;  4JK4 A;  4ZCG A;  4BKE A;  4E99 A;  5IIH A;  5B5T A;  3WHQ A;  2EFD A;  1FOU A;  3ECP A;  2AJE A;  1E7A A;  5GIP A;  4DM0 A;  4S1Y A;  4ZBQ A;  4TQ0 A;  5ID9 A;  2BXG A;  4BY9 C;  1H9Z A;  4TQ1 A;  1HK4 A;  1LOT A;  2BXO A;  2KBZ A;  4LUF A;  2LXS A;  4N3Z A;  1GNI A;  3GQU A;  3SIV B;  2BX8 A;  4I9O A;  4W4U B;  3MHS B;  4FIP B;  1E7F A;  3A73 A;  2BXB A;  1MM8 A;  5FUO A;  1E7B A;  4HGK A;  3V09 A;  2LQI A;  1GNJ A;  4F5T A;  5IIX A;  4M70 B;  2LQH A;  2QM6 A;  2XVU A;  1O9X A;  3JQZ A;  4EMX A;  3NVM A;  3NVK A;  1VFI A;  2ROH A;  1J7E A;  2DYO A;  4LA0 A;  3NVI A;  3LU7 A;  3G9K D;  2XMO A;  3FNM A;  3UIV A;  1LNS A;  4Z69 A;  4OT2 A;  1E7H A;  1HK1 A;  4G04 A;  5DBY A;  4F5V A;  4ZBK A;  1MIW A;  4GG2 A;  1J78 A;  4K71 A;  4N0U D;  2AGH B;  3V08 A;  3NMU A;  4OTT A;  3WHS A;  2NQO A;  4K2C A;  1KDX A;  1KXP D;  4J2V A;  3V03 A;  4DHX B;  3KJL A;  1BKE A;  3MHH B;  4FK5 B;  1TXU A;  2I2Z A;  4LB2 A;  5ID7 A;  2LXT A;  3CX9 A;  2BXK A;  4OR0 A;  1MUH A;  4F5S A;  3FWC C;  3SQJ A;  2VDB A;  2BXC A;  1JNB A;  3BPJ A;  2OT3 A;  1E7G A;  2DG5 A;  2VUF A;  4IW2 A;  4PO0 A;  2BXD A;  5IFO A;  1HK5 A;  5IIU A;  2LOQ A;  5IJF A;  5IJE A;  3M99 C;  1E7C A;  4Z9O A;  2XVW A;  5GIO A;  1UOR A;  3GQX A;  5GIN A;  2XW1 A;  1HK3 A;  2XW0 A;  2BXN A;  2BXI A;  2DBX A;  2QMC A;  5D7G A;  2E0Y A;  2XSI A;  4C31 B;  1HK2 A;  2Z8K A;  3FWB C;  3B9M A;  1KW2 A;  2GUT A;  2K0N A;  1BM0 A;  1BJ5 A;  1VZS A;  2BXQ A;  2EFC A;  4L9Q A;  2VUE A;  5GHK A;  5BPK A;  4MBE C;  4D7X A;  1SB0 A;  2XVQ A;  5HOZ A;  1NT2 B;  4G03 A;  5DQF A;  3VQI A;  4NAW B;  1N5U A;  2Z8J A;  3TDL A;  1AO6 A;  3GA9 L;  1MIV A;  1H5W A;  3LU6 A;  4LB9 A;  3SIU B;  5IJ5 A;  2DBW A;  3A75 A;  4F5U A;  3KIK A;  4IW1 A;  1E7I A;  2NNW A;  3B9L A;  2EFE A;  3LU8 A;  2DBU A;  4L8U A;  4LUH A;  4WA6 B;  2BXH A;  4ZBR A;  4GDL B;  2JUH A;  2YDF A;  3ICX A;  2KWF A;  2V36 A;  4G01 A;  4OTU A;  1TF0 A;  2I30 A;  1E7E A;  2OZB B;  1MA9 A;  2XVV A;  2QHB A;  2BXE A;  1HA2 A;  2BXF A;  2BXA A;  4FJC B;  2BXP A;  4ZUX V;  1MIY A;  2BXM A; 
#chains in the Genus database with same CATH homology
 3PLA A;  4N0F D;  2Z8I A;  4ZC6 A;  2DYM A;  4GDX A;  1E78 A;  2CKX A;  4HGM B;  3WHR A;  3H37 A;  3H3A A;  4L9K A;  2BXL A;  2EFH A;  3W1S A;  1IJG A;  3JRY A;  2E0X A;  4GDK B;  4JK4 A;  4ZCG A;  4BKE A;  4E99 A;  5IIH A;  5B5T A;  3WHQ A;  2EFD A;  1FOU A;  2AJE A;  1E7A A;  5GIP A;  4S1Y A;  4ZBQ A;  4TQ0 A;  5ID9 A;  2BXG A;  4BY9 C;  1H9Z A;  4TQ1 A;  1HK4 A;  1LOT A;  2BXO A;  2KBZ A;  4LUF A;  4N3Z A;  1GNI A;  3GQU A;  3SIV B;  2BX8 A;  4W4U B;  3MHS B;  4FIP B;  1E7F A;  3A73 A;  2BXB A;  5FUO A;  1E7B A;  4HGK A;  3V09 A;  1GNJ A;  4F5T A;  5IIX A;  4M70 B;  2QM6 A;  2XVU A;  1O9X A;  3JQZ A;  4EMX A;  3NVM A;  3NVK A;  1VFI A;  2ROH A;  1J7E A;  2DYO A;  4LA0 A;  3NVI A;  3LU7 A;  3G9K D;  2XMO A;  3FNM A;  3UIV A;  1LNS A;  4Z69 A;  4OT2 A;  1E7H A;  1HK1 A;  4G04 A;  5DBY A;  4F5V A;  4ZBK A;  1MIW A;  4GG2 A;  1J78 A;  4K71 A;  4N0U D;  3V08 A;  3NMU A;  4OTT A;  3WHS A;  2NQO A;  4K2C A;  1KXP D;  4J2V A;  3V03 A;  4DHX B;  3KJL A;  1BKE A;  3MHH B;  4FK5 B;  1TXU A;  2I2Z A;  4LB2 A;  5ID7 A;  3CX9 A;  2BXK A;  4OR0 A;  4F5S A;  3FWC C;  3SQJ A;  2VDB A;  2BXC A;  1JNB A;  4IW2 A;  2OT3 A;  1E7G A;  2DG5 A;  2VUF A;  4PO0 A;  5IFO A;  2BXD A;  1HK5 A;  5IIU A;  2LOQ A;  5IJF A;  5IJE A;  3M99 C;  1E7C A;  4Z9O A;  2XVW A;  5GIO A;  1UOR A;  3GQX A;  5GIN A;  2XW1 A;  1HK3 A;  2XW0 A;  2BXN A;  2BXI A;  2DBX A;  2QMC A;  5D7G A;  2E0Y A;  2XSI A;  4C31 B;  1HK2 A;  2Z8K A;  3FWB C;  3B9M A;  1KW2 A;  1BM0 A;  1BJ5 A;  1VZS A;  2BXQ A;  2EFC A;  4L9Q A;  2VUE A;  5GHK A;  5BPK A;  4MBE C;  2XVQ A;  5HOZ A;  1NT2 B;  4G03 A;  5DQF A;  3VQI A;  4NAW B;  1N5U A;  2Z8J A;  3TDL A;  1AO6 A;  3GA9 L;  1MIV A;  1H5W A;  3LU6 A;  4LB9 A;  3SIU B;  5IJ5 A;  2DBW A;  3A75 A;  4F5U A;  3KIK A;  4IW1 A;  1E7I A;  2NNW A;  3B9L A;  2EFE A;  3LU8 A;  2DBU A;  4L8U A;  4LUH A;  4WA6 B;  2BXH A;  4ZBR A;  4GDL B;  2JUH A;  2YDF A;  3ICX A;  2V36 A;  4G01 A;  4OTU A;  1TF0 A;  2I30 A;  1E7E A;  2OZB B;  1MA9 A;  2XVV A;  2QHB A;  2BXE A;  1HA2 A;  2BXF A;  2BXA A;  4FJC B;  2BXP A;  4ZUX V;  1MIY A;  2BXM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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