4LUPA

Crystal structure of the complex formed by region of e. coli sigmae bound to its -10 element non template strand
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
91
structure length
91
Chain Sequence
LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRLEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords RNA polymerase sigma factor
publication title Structural basis for -10 promoter element melting by environmentally induced sigma factors.
pubmed doi rcsb
source organism Escherichia coli
total genus 36
structure length 91
sequence length 91
chains with identical sequence C
ec nomenclature
pdb deposition date 2013-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04542 Sigma70_r2 Sigma-70 region 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.10 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 4lupA00
2WPGA 5JMWA 1G5AA 4ZN6A 4OOFA 1RP3A 3AU9A 5DULA 3ANMA 2Y1GA 4Y6PA 4OOEA 3WQQA 3UCQA 1S46A 3UEQA 2Y1DA 4NQWA 4CXFA 1ONPA 3R0IA 1JG9A 2O7GA 4Y6SA 4FLSA 3UERA 3ZHXA 2JD2A 1K5HA 2C82A 1MW1A 4FLRA 3WQSB 5JO0A 2EGHA 1Q0QA 5JAZA 4ZQFA 2MAOA 4ZQEA 1MW3A 3T0YA 4KP7A 1T1SA 5JC1A 2JCYA 1JGIA 4RCVA 1MW0A 3ZHZA 4ZQGA 1Q0HA 4FLQA 3IIEA 2JD1A 1Q0LA 4Y67A 4Y6RA 3CZGA 2JCVA 2JCXA 3CZLA 3AUAA 1ONOA 1JVSA 5JMPA 2Y1EA 5JBIA 3AU8A 1T1RA 3CZEA 1MVYA 1MW2A 1R0LA 4A03A 4GAEA 3ZI0A 2MAPA 3ANLA 1H3LA 5JNLA 3A14A 4FLOA 4AICA 3A06A 3RASA 1ZS2A 4LUPA 1R0KA 3ANNA 3CZKA 1SC5A 2Y1CA 4AYSA 3ZHYA 2JD0A 2Y1FA 3WQRA 1OR7A 1ONNA 4ZQHA
chains in the Genus database with same CATH superfamily
2WPGA 4ZX4A 5JMWA 2A7OA 2RJIA 3PUUA 1G5AA 4ZN6A 4ZW5A 1H19A 3RC8A 4OOFA 3Q44A 1RP3A 3AU9A 2HPOA 4XO5A 5DULA 2PGGA 3ANMA 2Y1GA 4XMXA 4DPRA 4QIRA 3FH7A 2C5ZA 4AR8A 4Y6PA 4X2UA 4OOEA 4XNDA 3FULA 4XO4A 4XMWA 4XN5A 3WQQA 4K5PA 3UCQA 5DLLA 4XO3A 1S46A 4BKXA 3B7RL 3FH8A 4QUOA 3FUNA 4XNBA 3UEQA 2XPYA 5EV7A 2Y1DA 3CIAA 3FUHA 4NQWA 4QPEA 1SQMA 3FUFA 4R5TA 3HW2A 1ONPA 4XN1A 2B61A 1JG9A 2O7GA 3R0IA 4ZW6A 3B3BA 4FLSA 3FH5A 2QVWA 4Y6SA 3UERA 2JD2A 3ZHXA 4ZX5A 5DYFA 1K5HA 2C82A 1MW1A 4FLRA 4K5MA 4Q4EA 1SG7A 2R72A 4XN4A 4ZX6A 4RVBA 3WQSB 5JO0A 2EGHA 4CXFA 1Q0QA 5JAZA 4ZQFA 4ZW7A 2MAOA 4MS6A 1MW3A 3JT1A 4KP7A 4ZQEA 3T0YA 3FHEA 1T1SA 5JC1A 3FUKA 2R70A 3FUMA 2JCYA 4XMZA 4FCAA 1JGIA 4RCVA 4RSYA 4L2LA 3FU5A 3FU0A 4K5LA 1MW0A 3B7TA 3CHRA 3ZHZA 3FUJA 4ZQGA 2DQ6A 3FUIA 2XQ0A 1Q0HA 3FTSA 4K5OA 4GAAA 4FLQA 3IIEA 2R59A 2ZXGA 4Q4IA 2JD1A 3JSZA 1Q0LA 3FTWA 4AR9A 1GW6A 4Y67A 4Y6RA 3RC3A 3CZGA 2WZGA 3EBGA 5BPPA 5HNHA 2QJ1A 2PL5A 2JCVA 3B34A 4JNDA 4XMVA 2JCXA 3CZLA 5FWQA 3VVMA 3AUAA 4J3BA 1ONOA 1JVSA 3KEDA 4ZX3A 3B7SA 5JMPA 2Y1EA 3FU6A 4XNAA 2VJ8A 3AU8A 3B2XA 3T8VA 5JBIA 3FTYA 4QMEA 1T1RA 3CZEA 4MKTA 1MVYA 1MW2A 1R0LA 1X3ZA 3B7UX 3CHSA 3QJXA 4XN2A 4GAEA 3ZI0A 4A03A 2JV7A 3B37A 4XMTA 2VLAA 2MAPA 2GTQA 3ANLA 3FTVA 4R5VA 3B2PA 5HNFA 2PUSA 1H3LA 1X3WA 3FU3A 3Q43A 5JNLA 3A14A 2WZFA 4FLOA 5HLTA 3CHPA 4XN7A 3EBIA 3FTXA 4AICA 2DQMA 4ZW3A 2FFLA 3A06A 4XMUA 3RASA 4R7LA 4XN8A 3CHQA 4ZQTA 1ZS2A 4LUPA 1R0KA 3ANNA 4XN9A 3CXBA 2HPTA 1HS6A 5AENA 3CHOA 4K5NA 4ZW8A 3CZKA 4PU2A 1SC5A 4QHPA 2Y1CA 3EBHA 4AYSA 3FUEA 3VVLA 3ZHYA 4PVBA 4ARFA 2JD0A 4R5XA 3U9WA 4AR1A 3FTUA 2Y1FA 3FUDA 3WQRA 1OR7A 3FTZA 1ONNA 4ZQHA 2XPZA 4PW4A
chains in the Genus database with same CATH topology
2WPGA 4ZX4A 5JMWA 2A7OA 2RJIA 3PUUA 1G5AA 4ZN6A 4ZW5A 1H19A 3RC8A 4OOFA 3Q44A 1RP3A 3AU9A 2HPOA 4XO5A 5DULA 2PGGA 3ANMA 2Y1GA 4XMXA 4DPRA 4QIRA 3FH7A 2C5ZA 4AR8A 4Y6PA 4X2UA 4OOEA 4XNDA 3FULA 4XO4A 4XMWA 4XN5A 3WQQA 4K5PA 3UCQA 5DLLA 4XO3A 1S46A 4BKXA 3B7RL 3FH8A 4QUOA 3FUNA 4XNBA 3UEQA 2XPYA 5EV7A 2Y1DA 3CIAA 3FUHA 4NQWA 4QPEA 1SQMA 3FUFA 4R5TA 4XN1A 1ONPA 4ARFA 2B61A 1JG9A 2O7GA 3R0IA 4ZW6A 3B3BA 4FLSA 3FH5A 2QVWA 4Y6SA 3UERA 2JD2A 3ZHXA 4ZX5A 5DYFA 1K5HA 2C82A 1MW1A 4FLRA 4K5MA 4Q4EA 1SG7A 2R72A 4XN4A 4ZX6A 4RVBA 3WQSB 5JO0A 2EGHA 4CXFA 1Q0QA 5JAZA 4ZQFA 4ZW7A 2MAOA 4MS6A 1MW3A 3JT1A 4KP7A 4ZQEA 3T0YA 3FHEA 1T1SA 5JC1A 3FUKA 2R70A 3FUMA 2JCYA 4XMZA 4FCAA 1JGIA 4RCVA 4RSYA 4L2LA 3FU5A 3FU0A 4K5LA 1MW0A 3B7TA 3CHRA 3ZHZA 3FUJA 4ZQGA 2DQ6A 3FUIA 2XQ0A 1Q0HA 3FTSA 4K5OA 4GAAA 4FLQA 3IIEA 2R59A 2ZXGA 4Q4IA 2JD1A 3JSZA 1Q0LA 3FTWA 4AR9A 1GW6A 4Y67A 4Y6RA 3RC3A 3CZGA 2WZGA 3EBGA 5BPPA 5HNHA 2QJ1A 2PL5A 2JCVA 3B34A 4JNDA 4XMVA 2JCXA 3CZLA 5FWQA 3VVMA 3AUAA 4J3BA 1ONOA 1JVSA 3KEDA 4ZX3A 3B7SA 5JMPA 2Y1EA 3FU6A 4XNAA 2VJ8A 3AU8A 3B2XA 3T8VA 5JBIA 3FTYA 4QMEA 1T1RA 3CZEA 4MKTA 1MVYA 1MW2A 1R0LA 1X3ZA 3B7UX 3CHSA 3QJXA 4XN2A 4GAEA 3ZI0A 4A03A 2JV7A 3B37A 4XMTA 2VLAA 2MAPA 2GTQA 3ANLA 3FTVA 4R5VA 3B2PA 5HNFA 2PUSA 1H3LA 1X3WA 3FU3A 3Q43A 5JNLA 3A14A 2WZFA 4FLOA 5HLTA 3CHPA 4XN7A 3EBIA 3FTXA 4AICA 2DQMA 4ZW3A 2FFLA 3A06A 4XMUA 3RASA 4R7LA 4XN8A 3CHQA 4ZQTA 1ZS2A 4LUPA 1R0KA 3ANNA 4XN9A 2HPTA 1HS6A 5AENA 3CHOA 4K5NA 4ZW8A 3CZKA 4PU2A 1SC5A 4QHPA 2Y1CA 3EBHA 4AYSA 3FUEA 3VVLA 3ZHYA 4PVBA 2JD0A 4R5XA 3U9WA 4AR1A 3FTUA 2Y1FA 3FUDA 3WQRA 1OR7A 3FTZA 1ONNA 4ZQHA 2XPZA 4PW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WPG A;  5JMW A;  1G5A A;  4ZN6 A;  4OOF A;  1RP3 A;  3AU9 A;  5DUL A;  3ANM A;  2Y1G A;  4Y6P A;  4OOE A;  3WQQ A;  3UCQ A;  1S46 A;  3UEQ A;  2Y1D A;  4NQW A;  4CXF A;  1ONP A;  3R0I A;  1JG9 A;  2O7G A;  4Y6S A;  4FLS A;  3UER A;  3ZHX A;  2JD2 A;  1K5H A;  2C82 A;  1MW1 A;  4FLR A;  3WQS B;  5JO0 A;  2EGH A;  1Q0Q A;  5JAZ A;  4ZQF A;  2MAO A;  4ZQE A;  1MW3 A;  3T0Y A;  4KP7 A;  1T1S A;  5JC1 A;  2JCY A;  1JGI A;  4RCV A;  1MW0 A;  3ZHZ A;  4ZQG A;  1Q0H A;  4FLQ A;  3IIE A;  2JD1 A;  1Q0L A;  4Y67 A;  4Y6R A;  3CZG A;  2JCV A;  2JCX A;  3CZL A;  3AUA A;  1ONO A;  1JVS A;  5JMP A;  2Y1E A;  5JBI A;  3AU8 A;  1T1R A;  3CZE A;  1MVY A;  1MW2 A;  1R0L A;  4A03 A;  4GAE A;  3ZI0 A;  2MAP A;  3ANL A;  1H3L A;  5JNL A;  3A14 A;  4FLO A;  4AIC A;  3A06 A;  3RAS A;  1ZS2 A;  4LUP A;  1R0K A;  3ANN A;  3CZK A;  1SC5 A;  2Y1C A;  4AYS A;  3ZHY A;  2JD0 A;  2Y1F A;  3WQR A;  1OR7 A;  1ONN A;  4ZQH A; 
#chains in the Genus database with same CATH topology
 2WPG A;  4ZX4 A;  5JMW A;  2A7O A;  2RJI A;  3PUU A;  1G5A A;  4ZN6 A;  4ZW5 A;  1H19 A;  3RC8 A;  4OOF A;  3Q44 A;  1RP3 A;  3AU9 A;  2HPO A;  4XO5 A;  5DUL A;  2PGG A;  3ANM A;  2Y1G A;  4XMX A;  4DPR A;  4QIR A;  3FH7 A;  2C5Z A;  4AR8 A;  4Y6P A;  4X2U A;  4OOE A;  4XND A;  3FUL A;  4XO4 A;  4XMW A;  4XN5 A;  3WQQ A;  4K5P A;  3UCQ A;  5DLL A;  4XO3 A;  1S46 A;  4BKX A;  3B7R L;  3FH8 A;  4QUO A;  3FUN A;  4XNB A;  3UEQ A;  2XPY A;  5EV7 A;  2Y1D A;  3CIA A;  3FUH A;  4NQW A;  4QPE A;  1SQM A;  3FUF A;  4R5T A;  3HW2 A;  1ONP A;  4XN1 A;  2B61 A;  1JG9 A;  2O7G A;  3R0I A;  4ZW6 A;  3B3B A;  4FLS A;  3FH5 A;  2QVW A;  4Y6S A;  3UER A;  2JD2 A;  3ZHX A;  4ZX5 A;  5DYF A;  1K5H A;  2C82 A;  1MW1 A;  4FLR A;  4K5M A;  4Q4E A;  1SG7 A;  2R72 A;  4XN4 A;  4ZX6 A;  4RVB A;  3WQS B;  5JO0 A;  2EGH A;  4CXF A;  1Q0Q A;  5JAZ A;  4ZQF A;  4ZW7 A;  2MAO A;  4MS6 A;  1MW3 A;  3JT1 A;  4KP7 A;  4ZQE A;  3T0Y A;  3FHE A;  1T1S A;  5JC1 A;  3FUK A;  2R70 A;  3FUM A;  2JCY A;  4XMZ A;  4FCA A;  1JGI A;  4RCV A;  4RSY A;  4L2L A;  3FU5 A;  3FU0 A;  4K5L A;  1MW0 A;  3B7T A;  3CHR A;  3ZHZ A;  3FUJ A;  4ZQG A;  2DQ6 A;  3FUI A;  2XQ0 A;  1Q0H A;  3FTS A;  4K5O A;  4GAA A;  4FLQ A;  3IIE A;  2R59 A;  2ZXG A;  4Q4I A;  2JD1 A;  3JSZ A;  1Q0L A;  3FTW A;  4AR9 A;  1GW6 A;  4Y67 A;  4Y6R A;  3RC3 A;  3CZG A;  2WZG A;  3EBG A;  5BPP A;  5HNH A;  2QJ1 A;  2PL5 A;  2JCV A;  3B34 A;  4JND A;  4XMV A;  2JCX A;  3CZL A;  5FWQ A;  3VVM A;  3AUA A;  4J3B A;  1ONO A;  1JVS A;  3KED A;  4ZX3 A;  3B7S A;  5JMP A;  2Y1E A;  3FU6 A;  4XNA A;  2VJ8 A;  3AU8 A;  3B2X A;  3T8V A;  5JBI A;  3FTY A;  4QME A;  1T1R A;  3CZE A;  4MKT A;  1MVY A;  1MW2 A;  1R0L A;  1X3Z A;  3B7U X;  3CHS A;  3QJX A;  4XN2 A;  4GAE A;  3ZI0 A;  4A03 A;  2JV7 A;  3B37 A;  4XMT A;  2VLA A;  2MAP A;  2GTQ A;  3ANL A;  3FTV A;  4R5V A;  3B2P A;  5HNF A;  2PUS A;  1H3L A;  1X3W A;  3FU3 A;  3Q43 A;  5JNL A;  3A14 A;  2WZF A;  4FLO A;  5HLT A;  3CHP A;  4XN7 A;  3EBI A;  3FTX A;  4AIC A;  2DQM A;  4ZW3 A;  2FFL A;  3A06 A;  4XMU A;  3RAS A;  4R7L A;  4XN8 A;  3CHQ A;  4ZQT A;  1ZS2 A;  4LUP A;  1R0K A;  3ANN A;  4XN9 A;  3CXB A;  2HPT A;  1HS6 A;  5AEN A;  3CHO A;  4K5N A;  4ZW8 A;  3CZK A;  4PU2 A;  1SC5 A;  4QHP A;  2Y1C A;  3EBH A;  4AYS A;  3FUE A;  3VVL A;  3ZHY A;  4PVB A;  4ARF A;  2JD0 A;  4R5X A;  3U9W A;  4AR1 A;  3FTU A;  2Y1F A;  3FUD A;  3WQR A;  1OR7 A;  3FTZ A;  1ONN A;  4ZQH A;  2XPZ A;  4PW4 A; 
#chains in the Genus database with same CATH homology
 2WPG A;  4ZX4 A;  5JMW A;  2A7O A;  2RJI A;  3PUU A;  1G5A A;  4ZN6 A;  4ZW5 A;  1H19 A;  3RC8 A;  4OOF A;  3Q44 A;  1RP3 A;  3AU9 A;  2HPO A;  4XO5 A;  5DUL A;  2PGG A;  3ANM A;  2Y1G A;  4XMX A;  4DPR A;  4QIR A;  3FH7 A;  2C5Z A;  4AR8 A;  4Y6P A;  4X2U A;  4OOE A;  4XND A;  3FUL A;  4XO4 A;  4XMW A;  4XN5 A;  3WQQ A;  4K5P A;  3UCQ A;  5DLL A;  4XO3 A;  1S46 A;  4BKX A;  3B7R L;  3FH8 A;  4QUO A;  3FUN A;  4XNB A;  3UEQ A;  2XPY A;  5EV7 A;  2Y1D A;  3CIA A;  3FUH A;  4NQW A;  4QPE A;  1SQM A;  3FUF A;  4R5T A;  4XN1 A;  1ONP A;  4ARF A;  2B61 A;  1JG9 A;  2O7G A;  3R0I A;  4ZW6 A;  3B3B A;  4FLS A;  3FH5 A;  2QVW A;  4Y6S A;  3UER A;  2JD2 A;  3ZHX A;  4ZX5 A;  5DYF A;  1K5H A;  2C82 A;  1MW1 A;  4FLR A;  4K5M A;  4Q4E A;  1SG7 A;  2R72 A;  4XN4 A;  4ZX6 A;  4RVB A;  3WQS B;  5JO0 A;  2EGH A;  4CXF A;  1Q0Q A;  5JAZ A;  4ZQF A;  4ZW7 A;  2MAO A;  4MS6 A;  1MW3 A;  3JT1 A;  4KP7 A;  4ZQE A;  3T0Y A;  3FHE A;  1T1S A;  5JC1 A;  3FUK A;  2R70 A;  3FUM A;  2JCY A;  4XMZ A;  4FCA A;  1JGI A;  4RCV A;  4RSY A;  4L2L A;  3FU5 A;  3FU0 A;  4K5L A;  1MW0 A;  3B7T A;  3CHR A;  3ZHZ A;  3FUJ A;  4ZQG A;  2DQ6 A;  3FUI A;  2XQ0 A;  1Q0H A;  3FTS A;  4K5O A;  4GAA A;  4FLQ A;  3IIE A;  2R59 A;  2ZXG A;  4Q4I A;  2JD1 A;  3JSZ A;  1Q0L A;  3FTW A;  4AR9 A;  1GW6 A;  4Y67 A;  4Y6R A;  3RC3 A;  3CZG A;  2WZG A;  3EBG A;  5BPP A;  5HNH A;  2QJ1 A;  2PL5 A;  2JCV A;  3B34 A;  4JND A;  4XMV A;  2JCX A;  3CZL A;  5FWQ A;  3VVM A;  3AUA A;  4J3B A;  1ONO A;  1JVS A;  3KED A;  4ZX3 A;  3B7S A;  5JMP A;  2Y1E A;  3FU6 A;  4XNA A;  2VJ8 A;  3AU8 A;  3B2X A;  3T8V A;  5JBI A;  3FTY A;  4QME A;  1T1R A;  3CZE A;  4MKT A;  1MVY A;  1MW2 A;  1R0L A;  1X3Z A;  3B7U X;  3CHS A;  3QJX A;  4XN2 A;  4GAE A;  3ZI0 A;  4A03 A;  2JV7 A;  3B37 A;  4XMT A;  2VLA A;  2MAP A;  2GTQ A;  3ANL A;  3FTV A;  4R5V A;  3B2P A;  5HNF A;  2PUS A;  1H3L A;  1X3W A;  3FU3 A;  3Q43 A;  5JNL A;  3A14 A;  2WZF A;  4FLO A;  5HLT A;  3CHP A;  4XN7 A;  3EBI A;  3FTX A;  4AIC A;  2DQM A;  4ZW3 A;  2FFL A;  3A06 A;  4XMU A;  3RAS A;  4R7L A;  4XN8 A;  3CHQ A;  4ZQT A;  1ZS2 A;  4LUP A;  1R0K A;  3ANN A;  4XN9 A;  2HPT A;  1HS6 A;  5AEN A;  3CHO A;  4K5N A;  4ZW8 A;  3CZK A;  4PU2 A;  1SC5 A;  4QHP A;  2Y1C A;  3EBH A;  4AYS A;  3FUE A;  3VVL A;  3ZHY A;  4PVB A;  2JD0 A;  4R5X A;  3U9W A;  4AR1 A;  3FTU A;  2Y1F A;  3FUD A;  3WQR A;  1OR7 A;  3FTZ A;  1ONN A;  4ZQH A;  2XPZ A;  4PW4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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