4LY5A

Crystal structure of naasp2 with zn2+
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
190
structure length
190
Chain Sequence
GCPDNGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antibiotic
molecule keywords Ancylostoma secreted protein 2
publication title Crystal structure of NaASP2 with Zn2+
rcsb
source organism Necator americanus
total genus 69
structure length 190
sequence length 190
ec nomenclature
pdb deposition date 2013-07-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00188 CAP Cysteine-rich secretory protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 4ly5A00
5ETEA 1WVRA 3NT8A 3S6UA 2DDAA 3S6VA 4H0AA 3Q2RA 2DDBA 3S6SA 1RC9A 1XX5A 1CFEA 1QNXA 2EPFA 3U3NC 1XTAA 4P27A 4D53A 3U3LC 4NUKA 4LY5A 4NUIA 2VZNA 3Q2UA 4NUOA 1SMBA 4TPVA 4AIWA 3U3UC 4G2UA 4IFAA 2GIZA 3MZ8A 4NUNA 5JYSA 1U53A
chains in the Genus database with same CATH superfamily
5ETEA 1WVRA 3NT8A 3S6UA 2DDAA 3S6VA 4H0AA 3Q2RA 2DDBA 3S6SA 1RC9A 1XX5A 1CFEA 1QNXA 2EPFA 3U3NC 1XTAA 4P27A 4D53A 3U3LC 4NUKA 4LY5A 4NUIA 2VZNA 3Q2UA 4NUOA 1SMBA 4TPVA 4AIWA 3U3UC 4G2UA 4IFAA 2GIZA 3MZ8A 4NUNA 5JYSA 1U53A
chains in the Genus database with same CATH topology
5ETEA 1WVRA 3NT8A 3S6UA 2DDAA 3S6VA 4H0AA 3Q2RA 2DDBA 3S6SA 1RC9A 1XX5A 1CFEA 1QNXA 2EPFA 3U3NC 1XTAA 4P27A 4D53A 3U3LC 4NUKA 4LY5A 4NUIA 2VZNA 3Q2UA 4NUOA 1SMBA 4TPVA 4AIWA 3U3UC 4G2UA 4IFAA 2GIZA 3MZ8A 4NUNA 5JYSA 1U53A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ETE A;  1WVR A;  3NT8 A;  3S6U A;  2DDA A;  3S6V A;  4H0A A;  3Q2R A;  2DDB A;  3S6S A;  1RC9 A;  1XX5 A;  1CFE A;  1QNX A;  2EPF A;  3U3N C;  1XTA A;  4P27 A;  4D53 A;  3U3L C;  4NUK A;  4LY5 A;  4NUI A;  2VZN A;  3Q2U A;  4NUO A;  1SMB A;  4TPV A;  4AIW A;  3U3U C;  4G2U A;  4IFA A;  2GIZ A;  3MZ8 A;  4NUN A;  5JYS A;  1U53 A; 
#chains in the Genus database with same CATH topology
 5ETE A;  1WVR A;  3NT8 A;  3S6U A;  2DDA A;  3S6V A;  4H0A A;  3Q2R A;  2DDB A;  3S6S A;  1RC9 A;  1XX5 A;  1CFE A;  1QNX A;  2EPF A;  3U3N C;  1XTA A;  4P27 A;  4D53 A;  3U3L C;  4NUK A;  4LY5 A;  4NUI A;  2VZN A;  3Q2U A;  4NUO A;  1SMB A;  4TPV A;  4AIW A;  3U3U C;  4G2U A;  4IFA A;  2GIZ A;  3MZ8 A;  4NUN A;  5JYS A;  1U53 A; 
#chains in the Genus database with same CATH homology
 5ETE A;  1WVR A;  3NT8 A;  3S6U A;  2DDA A;  3S6V A;  4H0A A;  3Q2R A;  2DDB A;  3S6S A;  1RC9 A;  1XX5 A;  1CFE A;  1QNX A;  2EPF A;  3U3N C;  1XTA A;  4P27 A;  4D53 A;  3U3L C;  4NUK A;  4LY5 A;  4NUI A;  2VZN A;  3Q2U A;  4NUO A;  1SMB A;  4TPV A;  4AIW A;  3U3U C;  4G2U A;  4IFA A;  2GIZ A;  3MZ8 A;  4NUN A;  5JYS A;  1U53 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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