The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
212
|
structure length |
212
|
Chain Sequence |
LTEISVNHGEHKQVTLPDGTVVHLNAGTVMRYPTEFTSDIRLVEMEGEAFFNVMRDEGKPFIVRTRQADVKVLGASFNVKAYQEDELMAVSVRTGKVEVDMPESVMRLLPNEQIIVNNTNGEILKKNEDAQKVTAWLQGGLYFNRTPISSVIHDLERMYNQEIVLDPNVVFDDYIYGEHDNKSLEAVLNAIQYSTGIRYRKEESRIVLYKTS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a conserved hypothetical protein, putative anti-sigma factor (BDI_1681) from Parabacteroides distasonis ATCC 8503 at 1.65 A resolution
rcsb |
| molecule keywords |
Conserved hypothetical protein, putative anti-sigma factor
|
| molecule tags |
Signaling protein
|
| source organism |
Parabacteroides distasonis
|
| total genus |
60
|
| structure length |
212
|
| sequence length |
212
|
| ec nomenclature | |
| pdb deposition date | 2013-08-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04773 | FecR | FecR protein |
| A | PF16344 | DUF4974 | Domain of unknown function (DUF4974) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | ||
| Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | Phage tail protein beta-alpha-beta fold |
