4M23A

Crystal structure of non-heme iron oxygenase orfp
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
336
structure length
332
Chain Sequence
TPSYSLTPAEASAVAELTLELAAAYGSFGDPVLLRDLPRLAARLPEGVQDFLREFKLADRHGHTVIRGHDFDQRRIGPTPDHWRGRVRPGPEFPEELLLMLYSALLGEPFGWATQQDGHLVHDIFPIRSHENDQLGMGSKQLLTWHTEDAFHPYRSDYLILGALRNPDHVPTTVGELDLSSLSAEDIDVLFEPRYHIAPDESHLPKATEEEAARFATIQRMIDERPLGPLLYGSRLDPYMRLDPYFTSVPQDDTDARRAYDALFKVVDSGMREVVADQGDVLFIDNHRAVHGRLPFQARYDGTDRWLKRVCVTSDLRRSREMRATSATRLLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords L-arginine beta-hydroxylase
publication title Biosynthesis of streptolidine involved two unexpected intermediates produced by a dihydroxylase and a cyclase through unusual mechanisms.
pubmed doi rcsb
source organism Streptomyces lavendulae
total genus 109
structure length 332
sequence length 336
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-08-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 4m23A00
2R6SA 1GY9A 2Q4AA 4M2CA 4BHGA 4C5WA 2OG5A 3V17A 3R1JA 1OS7A 4NE0A 5J92A 4J5IA 4BHFA 3V15A 4BHIA 1NX8A 1OIJC 3PVJA 1DS0A 2WBOA 1OTJA 4YLMX 2OG6A 1VZ5A 2OG7A 4M2FA 1JR7A 5KEUA 3O2GA 5HSXA 4M23A 4C8RA 1OIHA 4M27A 1GQWA 1OIIA 4M2IA 1OIJA 3EATX 3N6WA 1DRYA 4BG1A 4BGMA 3SWTA 4CVYA 1VZ4A 1Y0ZA 3MS5A 1NX4A 1DS1A 4CWDA 2WBQA 1DRTA 4BGKA 1OIJB 4M26A 4M2GA 4Y0EA 4FFAA 1GVGA 2WBPA 4M25A 4M2EA 1OIKA 4OJ8A
chains in the Genus database with same CATH superfamily
2R6SA 1GY9A 2Q4AA 4M2CA 4BHGA 4C5WA 2OG5A 3V17A 3R1JA 1OS7A 4NE0A 5J92A 4J5IA 4BHFA 3V15A 4BHIA 1YOXA 1NX8A 1OIJC 3PVJA 1DS0A 2WBOA 1OTJA 4YLMX 2OG6A 1VZ5A 2OG7A 4M2FA 1JR7A 5KEUA 3O2GA 5HSXA 4M23A 4C8RA 1OIHA 4M27A 1GQWA 1OIIA 4M2IA 1OIJA 3EATX 3N6WA 1DRYA 4BG1A 4BGMA 3SWTA 4CVYA 1VZ4A 1Y0ZA 3MS5A 1NX4A 1DS1A 4CWDA 2WBQA 1DRTA 4BGKA 1OIJB 4M26A 4M2GA 4Y0EA 4FFAA 1GVGA 2WBPA 4M25A 4M2EA 1PG6A 1OIKA 4OJ8A
chains in the Genus database with same CATH topology
4JAAA 2ILMA 2Y0IA 2OG5A 5J92A 3V15A 1DS0A 3KCXA 1OTJA 4M2FA 4C8RA 4B7EA 2WA3A 1OIIA 2CGOA 2XUMA 1VZ4A 1NX4A 2WBQA 4NR1A 4Y0EA 2WBPA 3KCYA 4AI8A 1OS7A 4J5IA 3PVJA 1MZFA 4YLMX 1VZ5A 1GQWA 3N6WA 4BG1A 1H2NA 3SWTA 1DS1A 4CWDA 4BGKA 4M26A 4FFAA 5JWPA 4M2EA 1OIKA 2R6SA 2Q4AA 4BHGA 3V17A 2WA4A 3P3PA 4NE0A 1MZEA 1NX8A 1JR7A 5KEUA 3P3NA 5HSXA 3EATX 2W0XA 1Y0ZA 1IZ3A 3OD4A 2CGNA 1OIJB 4Z1VA 4OJ8A 1H2KA 1GY9A 4M2CA 1H2MA 3R1JA 4BHFA 4BHIA 1OIJC 2WBOA 2YDEA 2OG6A 4Z2WA 2OG7A 2YC0A 4B7KA 3O2GA 4M23A 1YCIA 1OIHA 4M27A 4BIOA 4M2IA 4C5WA 1OIJA 1DRYA 4BGMA 4CVYA 1H2LA 3MS5A 1DRTA 4M2GA 4M25A 1GVGA 3D8CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R6S A;  1GY9 A;  2Q4A A;  4M2C A;  4BHG A;  4C5W A;  2OG5 A;  3V17 A;  3R1J A;  1OS7 A;  4NE0 A;  5J92 A;  4J5I A;  4BHF A;  3V15 A;  4BHI A;  1NX8 A;  1OIJ C;  3PVJ A;  1DS0 A;  2WBO A;  1OTJ A;  4YLM X;  2OG6 A;  1VZ5 A;  2OG7 A;  4M2F A;  1JR7 A;  5KEU A;  3O2G A;  5HSX A;  4M23 A;  4C8R A;  1OIH A;  4M27 A;  1GQW A;  1OII A;  4M2I A;  1OIJ A;  3EAT X;  3N6W A;  1DRY A;  4BG1 A;  4BGM A;  3SWT A;  4CVY A;  1VZ4 A;  1Y0Z A;  3MS5 A;  1NX4 A;  1DS1 A;  4CWD A;  2WBQ A;  1DRT A;  4BGK A;  1OIJ B;  4M26 A;  4M2G A;  4Y0E A;  4FFA A;  1GVG A;  2WBP A;  4M25 A;  4M2E A;  1OIK A;  4OJ8 A; 
#chains in the Genus database with same CATH topology
 2R6S A;  1GY9 A;  2Q4A A;  4M2C A;  4BHG A;  4C5W A;  2OG5 A;  3V17 A;  3R1J A;  1OS7 A;  4NE0 A;  5J92 A;  4J5I A;  4BHF A;  3V15 A;  4BHI A;  1YOX A;  1NX8 A;  1OIJ C;  3PVJ A;  1DS0 A;  2WBO A;  1OTJ A;  4YLM X;  2OG6 A;  1VZ5 A;  2OG7 A;  4M2F A;  1JR7 A;  5KEU A;  3O2G A;  5HSX A;  4M23 A;  4C8R A;  1OIH A;  4M27 A;  1GQW A;  1OII A;  4M2I A;  1OIJ A;  3EAT X;  3N6W A;  1DRY A;  4BG1 A;  4BGM A;  3SWT A;  4CVY A;  1VZ4 A;  1Y0Z A;  3MS5 A;  1NX4 A;  1DS1 A;  4CWD A;  2WBQ A;  1DRT A;  4BGK A;  1OIJ B;  4M26 A;  4M2G A;  4Y0E A;  4FFA A;  1GVG A;  2WBP A;  4M25 A;  4M2E A;  1PG6 A;  1OIK A;  4OJ8 A; 
#chains in the Genus database with same CATH homology
 4JAA A;  2ILM A;  2Y0I A;  2OG5 A;  5J92 A;  3V15 A;  1DS0 A;  3KCX A;  1OTJ A;  4M2F A;  4C8R A;  4B7E A;  2WA3 A;  1OII A;  2CGO A;  2XUM A;  1VZ4 A;  1NX4 A;  2WBQ A;  4NR1 A;  4Y0E A;  2WBP A;  3KCY A;  4AI8 A;  1OS7 A;  4J5I A;  3PVJ A;  1MZF A;  4YLM X;  1VZ5 A;  1GQW A;  3N6W A;  4BG1 A;  1H2N A;  3SWT A;  1DS1 A;  4CWD A;  4BGK A;  4M26 A;  4FFA A;  5JWP A;  4M2E A;  1OIK A;  2R6S A;  2Q4A A;  4BHG A;  3V17 A;  2WA4 A;  3P3P A;  4NE0 A;  1MZE A;  1NX8 A;  1JR7 A;  5KEU A;  3P3N A;  5HSX A;  3EAT X;  2W0X A;  1Y0Z A;  1IZ3 A;  3OD4 A;  2CGN A;  1OIJ B;  4Z1V A;  4OJ8 A;  1H2K A;  1GY9 A;  4M2C A;  1H2M A;  3R1J A;  4BHF A;  4BHI A;  1OIJ C;  2WBO A;  2YDE A;  2OG6 A;  4Z2W A;  2OG7 A;  2YC0 A;  4B7K A;  3O2G A;  4M23 A;  1YCI A;  1OIH A;  4M27 A;  4BIO A;  4M2I A;  4C5W A;  1OIJ A;  1DRY A;  4BGM A;  4CVY A;  1H2L A;  3MS5 A;  1DRT A;  4M2G A;  4M25 A;  1GVG A;  3D8C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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