4M2IA

Crystal structure of non-heme iron oxygenase orfp in complex with fe
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
336
structure length
321
Chain Sequence
TPSYSLTPAEASAVAELTLELAAAYGSFGDPVLLRDLPRLAARLPEGVQDFLREFKLADRHGHTVIRGHDFDQRRIGPTPDHWRGRVRPGPEFPEELLLMLYSALLGEPFGWATQQDGHLVHDIFPIRSHENDQLGMGSKQLLTWHTEDAFHPYRSDYLILGALRNPDHVPTTVGELDLSSLSAEDIDVLFEPRYHIAPDESHLATIQRMIDERPLGPLLYGSRLDPYMRLDPYFTSVPQDDTDARRAYDALFKVVDSGMREVVADQGDVLFIDNHRAVHGRLPFQARYDGTDRWLKRVCVTSDLRRSREMRATSATRLLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords L-arginine beta-hydroxylase
publication title Biosynthesis of streptolidine involved two unexpected intermediates produced by a dihydroxylase and a cyclase through unusual mechanisms.
pubmed doi rcsb
source organism Streptomyces lavendulae
total genus 99
structure length 321
sequence length 336
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-08-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 4m2iA00
3V17A 1DRTA 4M2EA 3O2GA 2Q4AA 2R6SA 1OIIA 4M2CA 1VZ5A 1NX8A 3SWTA 1OTJA 2OG5A 4BHFA 3R1JA 1OIKA 4Y0EA 4M2GA 1Y0ZA 4C5WA 4BG1A 4C8RA 4CWDA 1GQWA 1GVGA 1OS7A 3PVJA 4CVYA 1OIJB 2WBOA 4FFAA 4M2IA 1GY9A 4M23A 3N6WA 1OIHA 4OJ8A 1JR7A 4YLMX 1VZ4A 1DS1A 5J92A 1DS0A 1OIJA 1DRYA 4NE0A 3EATX 4M26A 2OG6A 4BHIA 1NX4A 4J5IA 3MS5A 2WBPA 4BHGA 4BGMA 5KEUA 2OG7A 4M25A 4M27A 2WBQA 4M2FA 4BGKA 1OIJC 3V15A 5HSXA
chains in the Genus database with same CATH superfamily
3V17A 1DRTA 4M2EA 3O2GA 2Q4AA 2R6SA 1OIIA 4M2CA 1VZ5A 1NX8A 3SWTA 1OTJA 2OG5A 4BHFA 3R1JA 5J92A 1OIKA 4Y0EA 4M2GA 1Y0ZA 4C5WA 4BG1A 4C8RA 4CWDA 1GQWA 1GVGA 1OS7A 3PVJA 4CVYA 1OIJB 2WBOA 4FFAA 4M2IA 1GY9A 4M23A 3N6WA 1OIHA 4OJ8A 1JR7A 4YLMX 1DS1A 1PG6A 1VZ4A 1DS0A 1OIJA 1DRYA 4NE0A 3EATX 4M26A 2OG6A 4BHIA 1NX4A 4J5IA 3MS5A 2WBPA 4BHGA 4BGMA 5KEUA 2OG7A 4M25A 1YOXA 4M27A 2WBQA 4M2FA 4BGKA 1OIJC 3V15A 5HSXA
chains in the Genus database with same CATH topology
3V17A 4M2EA 2Q4AA 1NX8A 2OG5A 4BHFA 1YCIA 4BG1A 4CWDA 1IZ3A 1GQWA 1GVGA 2WBOA 1H2MA 1JR7A 1OIJA 1DRYA 3D8CA 4M26A 2OG6A 2WBPA 4BHGA 5KEUA 4M27A 2YC0A 4BGKA 1OIJC 5HSXA 4JAAA 3O2GA 2R6SA 3SWTA 1H2LA 4C8RA 2YDEA 1MZEA 4M23A 1VZ4A 2WA4A 1DS0A 1MZFA 4Z2WA 2ILMA 3P3PA 2OG7A 4B7KA 2Y0IA 4BGMA 2W0XA 1DRTA 1OIIA 1VZ5A 2CGNA 1OTJA 3R1JA 1OIKA 4Y0EA 1Y0ZA 4C5WA 2CGOA 3PVJA 4Z1VA 4CVYA 2WA3A 4FFAA 1GY9A 1OIHA 4OJ8A 5JWPA 4AI8A 4BHIA 1NX4A 3KCXA 3MS5A 4M25A 4M2FA 4BIOA 1DS1A 4M2CA 4M2GA 1OS7A 3KCYA 3P3NA 4M2IA 5J92A 3N6WA 4YLMX 4NE0A 3EATX 1H2NA 4J5IA 3OD4A 4B7EA 1H2KA 2XUMA 2WBQA 1OIJB 3V15A 4NR1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V17 A;  1DRT A;  4M2E A;  3O2G A;  2Q4A A;  2R6S A;  1OII A;  4M2C A;  1VZ5 A;  1NX8 A;  3SWT A;  1OTJ A;  2OG5 A;  4BHF A;  3R1J A;  1OIK A;  4Y0E A;  4M2G A;  1Y0Z A;  4C5W A;  4BG1 A;  4C8R A;  4CWD A;  1GQW A;  1GVG A;  1OS7 A;  3PVJ A;  4CVY A;  1OIJ B;  2WBO A;  4FFA A;  4M2I A;  1GY9 A;  4M23 A;  3N6W A;  1OIH A;  4OJ8 A;  1JR7 A;  4YLM X;  1VZ4 A;  1DS1 A;  5J92 A;  1DS0 A;  1OIJ A;  1DRY A;  4NE0 A;  3EAT X;  4M26 A;  2OG6 A;  4BHI A;  1NX4 A;  4J5I A;  3MS5 A;  2WBP A;  4BHG A;  4BGM A;  5KEU A;  2OG7 A;  4M25 A;  4M27 A;  2WBQ A;  4M2F A;  4BGK A;  1OIJ C;  3V15 A;  5HSX A; 
#chains in the Genus database with same CATH topology
 3V17 A;  1DRT A;  4M2E A;  3O2G A;  2Q4A A;  2R6S A;  1OII A;  4M2C A;  1VZ5 A;  1NX8 A;  3SWT A;  1OTJ A;  2OG5 A;  4BHF A;  3R1J A;  5J92 A;  1OIK A;  4Y0E A;  4M2G A;  1Y0Z A;  4C5W A;  4BG1 A;  4C8R A;  4CWD A;  1GQW A;  1GVG A;  1OS7 A;  3PVJ A;  4CVY A;  1OIJ B;  2WBO A;  4FFA A;  4M2I A;  1GY9 A;  4M23 A;  3N6W A;  1OIH A;  4OJ8 A;  1JR7 A;  4YLM X;  1DS1 A;  1PG6 A;  1VZ4 A;  1DS0 A;  1OIJ A;  1DRY A;  4NE0 A;  3EAT X;  4M26 A;  2OG6 A;  4BHI A;  1NX4 A;  4J5I A;  3MS5 A;  2WBP A;  4BHG A;  4BGM A;  5KEU A;  2OG7 A;  4M25 A;  1YOX A;  4M27 A;  2WBQ A;  4M2F A;  4BGK A;  1OIJ C;  3V15 A;  5HSX A; 
#chains in the Genus database with same CATH homology
 3V17 A;  4M2E A;  2Q4A A;  1NX8 A;  2OG5 A;  4BHF A;  1YCI A;  4BG1 A;  4CWD A;  1IZ3 A;  1GQW A;  1GVG A;  2WBO A;  1H2M A;  1JR7 A;  1OIJ A;  1DRY A;  3D8C A;  4M26 A;  2OG6 A;  2WBP A;  4BHG A;  5KEU A;  4M27 A;  2YC0 A;  4BGK A;  1OIJ C;  5HSX A;  4JAA A;  3O2G A;  2R6S A;  3SWT A;  1H2L A;  4C8R A;  2YDE A;  1MZE A;  4M23 A;  1VZ4 A;  2WA4 A;  1DS0 A;  1MZF A;  4Z2W A;  2ILM A;  3P3P A;  2OG7 A;  4B7K A;  2Y0I A;  4BGM A;  2W0X A;  1DRT A;  1OII A;  1VZ5 A;  2CGN A;  1OTJ A;  3R1J A;  1OIK A;  4Y0E A;  1Y0Z A;  4C5W A;  2CGO A;  3PVJ A;  4Z1V A;  4CVY A;  2WA3 A;  4FFA A;  1GY9 A;  1OIH A;  4OJ8 A;  5JWP A;  4AI8 A;  4BHI A;  1NX4 A;  3KCX A;  3MS5 A;  4M25 A;  4M2F A;  4BIO A;  1DS1 A;  4M2C A;  4M2G A;  1OS7 A;  3KCY A;  3P3N A;  4M2I A;  5J92 A;  3N6W A;  4YLM X;  4NE0 A;  3EAT X;  1H2N A;  4J5I A;  3OD4 A;  4B7E A;  1H2K A;  2XUM A;  2WBQ A;  1OIJ B;  3V15 A;  4NR1 A; 
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