4M8ZA

Crystal structure of sfh3, a phosphatidylinositol transfer protein that integrates phosphoinositide signaling with lipid droplet metabolism
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
329
structure length
319
Chain Sequence
NLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVYWPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A phosphatidylinositol transfer protein integrates phosphoinositide signaling with lipid droplet metabolism to regulate a developmental program of nutrient stress-induced membrane biogenesis.
pubmed doi rcsb
molecule tags Signaling protein
source organism Saccharomyces cerevisiae s288c
molecule keywords Phosphatidylinositol transfer protein PDR16
total genus 111
structure length 319
sequence length 329
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00650 CRAL_TRIO CRAL/TRIO domain
A PF03765 CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.525.10 Alpha Beta 3-Layer(aba) Sandwich Phosphatidylinositol Transfer Protein Sec14p CRAL-TRIO lipid binding domain 4m8zA00
4M8ZA 3B7ZA 2D4QA 3PEGA 4TLGA 1AUAA 1O6UA 1OIZA 3HY5A 3W68A 4CJ6A 1OLME 4UYBA 3W67A 3P7ZA 2E2XA 4OMJA 3Q8GA 1R5LA 1OIPA 3HX3A 3B74A 3PG7A 3B7NA 4OMKA 4CIZA 4J7QA 4FMMA 4J7PA 1OLMA 3B7QA
chains in the Genus database with same CATH superfamily
4M8ZA 3B7ZA 2D4QA 3PEGA 4TLGA 1AUAA 1O6UA 1OIZA 3HY5A 3W68A 4CJ6A 1OLME 4UYBA 3W67A 3P7ZA 2E2XA 4OMJA 3Q8GA 1R5LA 1OIPA 3HX3A 3B74A 3PG7A 3B7NA 4OMKA 4CIZA 4J7QA 4FMMA 4J7PA 1OLMA 3B7QA
chains in the Genus database with same CATH topology
4M8ZA 3B7ZA 2D4QA 3PEGA 4TLGA 1AUAA 1O6UA 1OIZA 3HY5A 3W68A 4CJ6A 1OLME 4UYBA 3W67A 3P7ZA 2E2XA 4OMJA 3Q8GA 1R5LA 1OIPA 3HX3A 3B74A 3PG7A 3B7NA 4OMKA 4CIZA 4J7QA 4FMMA 4J7PA 1OLMA 3B7QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4M8Z A;  3B7Z A;  2D4Q A;  3PEG A;  4TLG A;  1AUA A;  1O6U A;  1OIZ A;  3HY5 A;  3W68 A;  4CJ6 A;  1OLM E;  4UYB A;  3W67 A;  3P7Z A;  2E2X A;  4OMJ A;  3Q8G A;  1R5L A;  1OIP A;  3HX3 A;  3B74 A;  3PG7 A;  3B7N A;  4OMK A;  4CIZ A;  4J7Q A;  4FMM A;  4J7P A;  1OLM A;  3B7Q A; 
#chains in the Genus database with same CATH topology
 4M8Z A;  3B7Z A;  2D4Q A;  3PEG A;  4TLG A;  1AUA A;  1O6U A;  1OIZ A;  3HY5 A;  3W68 A;  4CJ6 A;  1OLM E;  4UYB A;  3W67 A;  3P7Z A;  2E2X A;  4OMJ A;  3Q8G A;  1R5L A;  1OIP A;  3HX3 A;  3B74 A;  3PG7 A;  3B7N A;  4OMK A;  4CIZ A;  4J7Q A;  4FMM A;  4J7P A;  1OLM A;  3B7Q A; 
#chains in the Genus database with same CATH homology
 4M8Z A;  3B7Z A;  2D4Q A;  3PEG A;  4TLG A;  1AUA A;  1O6U A;  1OIZ A;  3HY5 A;  3W68 A;  4CJ6 A;  1OLM E;  4UYB A;  3W67 A;  3P7Z A;  2E2X A;  4OMJ A;  3Q8G A;  1R5L A;  1OIP A;  3HX3 A;  3B74 A;  3PG7 A;  3B7N A;  4OMK A;  4CIZ A;  4J7Q A;  4FMM A;  4J7P A;  1OLM A;  3B7Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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