4MCCA

Hintrmd in complex with n-[4-(aminomethyl)benzyl]-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
Knots found
sequence length
219
structure length
206
Chain Sequence
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/transferase inhibitor
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Selective Inhibitors of Bacterial t-RNA-(N(1)G37) Methyltransferase (TrmD) That Demonstrate Novel Ordering of the Lid Domain.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 52
structure length 206
sequence length 219
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2013-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4mccA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4mccA01
4YQ8A 4YVHA 5CO4A 4YVKA 1NXZA 5FAIA 2O3AA 4YQAA 3AXZA 3QUVA 4YPZA 3BBHA 2I6DA 3AI9X 4YQJA 1P9PA 4YQ7A 4YQ4A 4CNEA 4KDZA 2V3JA 4YQ2A 4YQGA 1J85A 3ONPA 4MCBA 4YQKA 4PZKA 3BBDA 4YQCA 3O7BA 4J3CA 2CX8A 4E8BA 1O6DA 3KY7A 1GZ0A 3ILKA 3OIIA 4CNGA 4FAKA 3AIAA 4YPWA 2EGVA 4YQLA 4YQTA 4H3ZA 4YQ1A 3KNUA 4YQNA 4L69A 1X7OA 4CNDA 1NS5A 3OIJA 1VHKA 1TO0A 1ZJRA 3E5YA 4MCDA 4YQOA 1X7PA 5GMBA 3KTYA 3N4KA 4MCCA 4RG1A 1UAJA 5GM8A 1V6ZA 1OY5A 2V3KA 4YQ6A 5D9FA 4YQ5A 3NK6A 4YPYA 3IEFA 2Z0YA 4X3MA 4YQPA 4YQSA 3GYQA 4X3LA 4JAKA 3BBEA 2QWVA 4YVGA 5GMCA 4IG6A 2YY8A 4YQRA 4JALA 4YQQA 4YPXA 4YQ0A 3L8UA 4YVJA 1V2XA 1UAKA 3KW2A 4YVIA 4YQ3A 3N4JA 3IC6A 4YQDA 1UAMA 3NK7A 2EGWA 4XBOA 1VHYA 2HA8A 4CNFA 3DCMX 4YQBA 1UALA 1VH0A 3OINA 4YQIA 4H3YA 1K3RA 1MXIA 1Z85A 2QMMA 4KGNA 1IPAA 4YQ9A
chains in the Genus database with same CATH superfamily
4YQ8A 4YVHA 5CO4A 4YVKA 1NXZA 1RCSA 5FAIA 2O3AA 1WRTR 4JWFA 4YQAA 3AXZA 3QUVA 4YPZA 3BBHA 2I6DA 3AI9X 3WRPA 4YQJA 4KGNA 3FRWA 1P9PA 4YQ7A 4YQ4A 4CNEA 4KDZA 2V3JA 4YQ2A 4YQGA 1J85A 3ONPA 4MCBA 4YQKA 4PZKA 3BBDA 1CO0A 4YQCA 4FMWA 3O7BA 4J3CA 4JWGA 2CX8A 4E8BA 1O6DA 3KY7A 1GZ0A 4JWHA 3ILKA 3OIIA 4CNGA 4FAKA 1JHGA 3AIAA 1MI7R 4YPWA 1WRPR 2EGVA 4JWJA 4YQLA 1ZT9A 4YQTA 4H3ZA 4YQ1A 3KNUA 4YQNA 4L69A 1X7OA 3SSWN 4CNDA 1NS5A 3OIJA 1VHKA 1TO0A 1ZJRA 3E5YA 4MCDA 2XDIA 4YQOA 1X7PA 5GMBA 3SSXN 3KTYA 3N4KA 4MCCA 4RG1A 1UAJA 5GM8A 1V6ZA 1OY5A 2V3KA 4YQ6A 5D9FA 4YQ5A 1WRSR 3NK6A 4YPYA 3IEFA 2Z0YA 4X3MA 4YQPA 4YQSA 3GYQA 4X3LA 4JAKA 1TROA 3BBEA 2QWVA 3G1CA 4YVGA 5GMCA 4IG6A 2YY8A 4YQRA 4JALA 4YQQA 4YPXA 4YQ0A 3L8UA 4YVJA 3KORA 1V2XA 1UAKA 3KW2A 4YVIA 4YQ3A 3N4JA 3IC6A 4YQDA 2OZ9R 1UAMA 3NK7A 2EGWA 4XBOA 1VHYA 2HA8A 4CNFA 3DCMX 4YQBA 1UALA 1VH0A 3OINA 4YQIA 4H3YA 1K3RA 1MXIA 1Z85A 2QMMA 1TRRA 1IPAA 4YQ9A
chains in the Genus database with same CATH topology
4YQ8A 4YVHA 5CO4A 4YVKA 1NXZA 5FAIA 2O3AA 4JWFA 4YQAA 3AXZA 3QUVA 4YPZA 3BBHA 2I6DA 3AI9X 4YQJA 1P9PA 4YQ7A 4YQ4A 4CNEA 4KDZA 2V3JA 4YQ2A 4YQGA 1J85A 3ONPA 4MCBA 4YQKA 4PZKA 3BBDA 4YQCA 4FMWA 3O7BA 4J3CA 4JWGA 2CX8A 4E8BA 1O6DA 3KY7A 1GZ0A 4JWHA 3ILKA 3OIIA 4CNGA 4FAKA 3AIAA 4YPWA 2EGVA 4JWJA 4YQLA 4YQTA 4H3ZA 4YQ1A 3KNUA 4YQNA 4L69A 1X7OA 4CNDA 1NS5A 3OIJA 1VHKA 1TO0A 1ZJRA 3E5YA 4MCDA 4YQOA 1X7PA 5GMBA 3KTYA 3N4KA 4MCCA 4RG1A 1UAJA 5GM8A 1V6ZA 1OY5A 2V3KA 4YQ6A 5D9FA 4YQ5A 3NK6A 4YPYA 3IEFA 2Z0YA 4X3MA 4YQPA 4YQSA 3GYQA 4X3LA 4JAKA 3BBEA 2QWVA 4YVGA 5GMCA 4IG6A 2YY8A 4YQRA 4JALA 4YQQA 4YPXA 4YQ0A 3L8UA 4YVJA 1V2XA 1UAKA 3KW2A 4YVIA 4YQ3A 3N4JA 3IC6A 4YQDA 1UAMA 3NK7A 2EGWA 4XBOA 1VHYA 2HA8A 4CNFA 3DCMX 4YQBA 1UALA 1VH0A 3OINA 4YQIA 4H3YA 1K3RA 1MXIA 1Z85A 2QMMA 4KGNA 1IPAA 4YQ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQ8 A;  4YVH A;  5CO4 A;  4YVK A;  1NXZ A;  5FAI A;  2O3A A;  4YQA A;  3AXZ A;  3QUV A;  4YPZ A;  3BBH A;  2I6D A;  3AI9 X;  4YQJ A;  1P9P A;  4YQ7 A;  4YQ4 A;  4CNE A;  4KDZ A;  2V3J A;  4YQ2 A;  4YQG A;  1J85 A;  3ONP A;  4MCB A;  4YQK A;  4PZK A;  3BBD A;  4YQC A;  3O7B A;  4J3C A;  2CX8 A;  4E8B A;  1O6D A;  3KY7 A;  1GZ0 A;  3ILK A;  3OII A;  4CNG A;  4FAK A;  3AIA A;  4YPW A;  2EGV A;  4YQL A;  4YQT A;  4H3Z A;  4YQ1 A;  3KNU A;  4YQN A;  4L69 A;  1X7O A;  4CND A;  1NS5 A;  3OIJ A;  1VHK A;  1TO0 A;  1ZJR A;  3E5Y A;  4MCD A;  4YQO A;  1X7P A;  5GMB A;  3KTY A;  3N4K A;  4MCC A;  4RG1 A;  1UAJ A;  5GM8 A;  1V6Z A;  1OY5 A;  2V3K A;  4YQ6 A;  5D9F A;  4YQ5 A;  3NK6 A;  4YPY A;  3IEF A;  2Z0Y A;  4X3M A;  4YQP A;  4YQS A;  3GYQ A;  4X3L A;  4JAK A;  3BBE A;  2QWV A;  4YVG A;  5GMC A;  4IG6 A;  2YY8 A;  4YQR A;  4JAL A;  4YQQ A;  4YPX A;  4YQ0 A;  3L8U A;  4YVJ A;  1V2X A;  1UAK A;  3KW2 A;  4YVI A;  4YQ3 A;  3N4J A;  3IC6 A;  4YQD A;  1UAM A;  3NK7 A;  2EGW A;  4XBO A;  1VHY A;  2HA8 A;  4CNF A;  3DCM X;  4YQB A;  1UAL A;  1VH0 A;  3OIN A;  4YQI A;  4H3Y A;  1K3R A;  1MXI A;  1Z85 A;  2QMM A;  4KGN A;  1IPA A;  4YQ9 A; 
#chains in the Genus database with same CATH topology
 4YQ8 A;  4YVH A;  5CO4 A;  4YVK A;  1NXZ A;  1RCS A;  5FAI A;  2O3A A;  1WRT R;  4JWF A;  4YQA A;  3AXZ A;  3QUV A;  4YPZ A;  3BBH A;  2I6D A;  3AI9 X;  3WRP A;  4YQJ A;  4KGN A;  3FRW A;  1P9P A;  4YQ7 A;  4YQ4 A;  4CNE A;  4KDZ A;  2V3J A;  4YQ2 A;  4YQG A;  1J85 A;  3ONP A;  4MCB A;  4YQK A;  4PZK A;  3BBD A;  1CO0 A;  4YQC A;  4FMW A;  3O7B A;  4J3C A;  4JWG A;  2CX8 A;  4E8B A;  1O6D A;  3KY7 A;  1GZ0 A;  4JWH A;  3ILK A;  3OII A;  4CNG A;  4FAK A;  1JHG A;  3AIA A;  1MI7 R;  4YPW A;  1WRP R;  2EGV A;  4JWJ A;  4YQL A;  1ZT9 A;  4YQT A;  4H3Z A;  4YQ1 A;  3KNU A;  4YQN A;  4L69 A;  1X7O A;  3SSW N;  4CND A;  1NS5 A;  3OIJ A;  1VHK A;  1TO0 A;  1ZJR A;  3E5Y A;  4MCD A;  2XDI A;  4YQO A;  1X7P A;  5GMB A;  3SSX N;  3KTY A;  3N4K A;  4MCC A;  4RG1 A;  1UAJ A;  5GM8 A;  1V6Z A;  1OY5 A;  2V3K A;  4YQ6 A;  5D9F A;  4YQ5 A;  1WRS R;  3NK6 A;  4YPY A;  3IEF A;  2Z0Y A;  4X3M A;  4YQP A;  4YQS A;  3GYQ A;  4X3L A;  4JAK A;  1TRO A;  3BBE A;  2QWV A;  3G1C A;  4YVG A;  5GMC A;  4IG6 A;  2YY8 A;  4YQR A;  4JAL A;  4YQQ A;  4YPX A;  4YQ0 A;  3L8U A;  4YVJ A;  3KOR A;  1V2X A;  1UAK A;  3KW2 A;  4YVI A;  4YQ3 A;  3N4J A;  3IC6 A;  4YQD A;  2OZ9 R;  1UAM A;  3NK7 A;  2EGW A;  4XBO A;  1VHY A;  2HA8 A;  4CNF A;  3DCM X;  4YQB A;  1UAL A;  1VH0 A;  3OIN A;  4YQI A;  4H3Y A;  1K3R A;  1MXI A;  1Z85 A;  2QMM A;  1TRR A;  1IPA A;  4YQ9 A; 
#chains in the Genus database with same CATH homology
 4YQ8 A;  4YVH A;  5CO4 A;  4YVK A;  1NXZ A;  5FAI A;  2O3A A;  4JWF A;  4YQA A;  3AXZ A;  3QUV A;  4YPZ A;  3BBH A;  2I6D A;  3AI9 X;  4YQJ A;  1P9P A;  4YQ7 A;  4YQ4 A;  4CNE A;  4KDZ A;  2V3J A;  4YQ2 A;  4YQG A;  1J85 A;  3ONP A;  4MCB A;  4YQK A;  4PZK A;  3BBD A;  4YQC A;  4FMW A;  3O7B A;  4J3C A;  4JWG A;  2CX8 A;  4E8B A;  1O6D A;  3KY7 A;  1GZ0 A;  4JWH A;  3ILK A;  3OII A;  4CNG A;  4FAK A;  3AIA A;  4YPW A;  2EGV A;  4JWJ A;  4YQL A;  4YQT A;  4H3Z A;  4YQ1 A;  3KNU A;  4YQN A;  4L69 A;  1X7O A;  4CND A;  1NS5 A;  3OIJ A;  1VHK A;  1TO0 A;  1ZJR A;  3E5Y A;  4MCD A;  4YQO A;  1X7P A;  5GMB A;  3KTY A;  3N4K A;  4MCC A;  4RG1 A;  1UAJ A;  5GM8 A;  1V6Z A;  1OY5 A;  2V3K A;  4YQ6 A;  5D9F A;  4YQ5 A;  3NK6 A;  4YPY A;  3IEF A;  2Z0Y A;  4X3M A;  4YQP A;  4YQS A;  3GYQ A;  4X3L A;  4JAK A;  3BBE A;  2QWV A;  4YVG A;  5GMC A;  4IG6 A;  2YY8 A;  4YQR A;  4JAL A;  4YQQ A;  4YPX A;  4YQ0 A;  3L8U A;  4YVJ A;  1V2X A;  1UAK A;  3KW2 A;  4YVI A;  4YQ3 A;  3N4J A;  3IC6 A;  4YQD A;  1UAM A;  3NK7 A;  2EGW A;  4XBO A;  1VHY A;  2HA8 A;  4CNF A;  3DCM X;  4YQB A;  1UAL A;  1VH0 A;  3OIN A;  4YQI A;  4H3Y A;  1K3R A;  1MXI A;  1Z85 A;  2QMM A;  4KGN A;  1IPA A;  4YQ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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