4MCXB

P. vulgaris higba structure, crystal form 2
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
93
structure length
93
Chain Sequence
SHMMIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Antidote protein
publication title Structure of the Proteus vulgaris HigB-(HigA)2-HigB Toxin-Antitoxin Complex.
pubmed doi rcsb
source organism Proteus vulgaris
total genus 22
structure length 93
sequence length 93
chains with identical sequence D, F
ec nomenclature
pdb deposition date 2013-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF05015 HigB-like_toxin RelE-like toxin of type II toxin-antitoxin system HigB
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 4mcxB00
4LSYA 4Q2UB 2A6QE 5IWHA 2KC9A 3KXEA 2OTRA 2KC8A 4MMJA 4FXHA 5CW7B 4MCTB 4MCXB 5CZFC 4ML2A 2KHEA 4PX8A 5CEGB 1Z8MA 4ML0B 2A6SA 4LTTA 4LS4A 4FXED 2A6RA 4YY3Y 1WMIA 4MMGA 5CZEB 5IXLA 3BPQB 3OEIC 3G5OB 4FXIA 4NRNA
chains in the Genus database with same CATH superfamily
2DJHA 4LSYA 4Q2UB 2A6QE 2DFXE 5IWHA 3HI2B 2KC9A 3KXEA 2OTRA 2KC8A 4MMJA 4FXHA 3AO9A 4FBDA 5CW7B 4MCTB 4MCXB 5CZFC 4ML2A 2PD0A 2KHEA 4PX8A 5CEGB 1Z8MA 4ML0B 2A6SA 2FHZB 3VJ7A 2A8KA 4LTTA 4FXED 4LS4A 2A6RA 4YY3Y 1XQBA 1WMIA 4MMGA 5CZEB 5IXLA 3BPQB 3OEIC 3G5OB 4FXIA 4NRNA
chains in the Genus database with same CATH topology
4LSYA 4Q2UB 2A6QE 5IWHA 2KC9A 3KXEA 2OTRA 2KC8A 4MMJA 4FXHA 5CW7B 4MCTB 4MCXB 5CZFC 4ML2A 2KHEA 4PX8A 5CEGB 1Z8MA 4ML0B 2A6SA 4LTTA 4LS4A 4FXED 2A6RA 4YY3Y 1WMIA 4MMGA 5CZEB 5IXLA 3BPQB 3OEIC 3G5OB 4FXIA 4NRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LSY A;  4Q2U B;  2A6Q E;  5IWH A;  2KC9 A;  3KXE A;  2OTR A;  2KC8 A;  4MMJ A;  4FXH A;  5CW7 B;  4MCT B;  4MCX B;  5CZF C;  4ML2 A;  2KHE A;  4PX8 A;  5CEG B;  1Z8M A;  4ML0 B;  2A6S A;  4LTT A;  4LS4 A;  4FXE D;  2A6R A;  4YY3 Y;  1WMI A;  4MMG A;  5CZE B;  5IXL A;  3BPQ B;  3OEI C;  3G5O B;  4FXI A;  4NRN A; 
#chains in the Genus database with same CATH topology
 2DJH A;  4LSY A;  4Q2U B;  2A6Q E;  2DFX E;  5IWH A;  3HI2 B;  2KC9 A;  3KXE A;  2OTR A;  2KC8 A;  4MMJ A;  4FXH A;  3AO9 A;  4FBD A;  5CW7 B;  4MCT B;  4MCX B;  5CZF C;  4ML2 A;  2PD0 A;  2KHE A;  4PX8 A;  5CEG B;  1Z8M A;  4ML0 B;  2A6S A;  2FHZ B;  3VJ7 A;  2A8K A;  4LTT A;  4FXE D;  4LS4 A;  2A6R A;  4YY3 Y;  1XQB A;  1WMI A;  4MMG A;  5CZE B;  5IXL A;  3BPQ B;  3OEI C;  3G5O B;  4FXI A;  4NRN A; 
#chains in the Genus database with same CATH homology
 4LSY A;  4Q2U B;  2A6Q E;  5IWH A;  2KC9 A;  3KXE A;  2OTR A;  2KC8 A;  4MMJ A;  4FXH A;  5CW7 B;  4MCT B;  4MCX B;  5CZF C;  4ML2 A;  2KHE A;  4PX8 A;  5CEG B;  1Z8M A;  4ML0 B;  2A6S A;  4LTT A;  4LS4 A;  4FXE D;  2A6R A;  4YY3 Y;  1WMI A;  4MMG A;  5CZE B;  5IXL A;  3BPQ B;  3OEI C;  3G5O B;  4FXI A;  4NRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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