The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
24
|
sequence length |
78
|
structure length |
78
|
Chain Sequence |
ARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAYVSERTTRHNRDLMRRGYMEMAKINLNISSEAHFAECEAE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase/hydrolase inhibitor
|
| molecule keywords |
mRNA interferase EndoA
|
| publication title |
Structural Basis of mRNA Recognition and Cleavage by Toxin MazF and Its Regulation by Antitoxin MazE in Bacillus subtilis.
pubmed doi rcsb |
| source organism |
Bacillus subtilis subsp. subtilis
|
| total genus |
24
|
| structure length |
78
|
| sequence length |
78
|
| chains with identical sequence |
F
|
| ec nomenclature | |
| pdb deposition date | 2013-08-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| E | PF01402 | RHH_1 | Ribbon-helix-helix protein, copG family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant | Met repressor-like |
#chains in the Genus database with same CATH superfamily 3H87 C; 2CAX A; 2RBF A; 2JXI A; 4HV0 A; 2GPE A; 3FMT A; 2BJ8 A; 1EA4 A; 1MNT A; 2WVF A; 3VW4 A; 1ARQ A; 2WVE A; 2JXG A; 1MYK A; 2K29 A; 1PAR A; 2BSQ E; 2H1O E; 1ARR A; 1X93 A; 2BJ3 A; 2JXH A; 3GXQ A; 3FT7 A; 4FXE A; 2BA3 A; 2KEL A; 1NLA A; 1BDT A; 2HZV A; 2WVB A; 2AY0 A; 2BNW A; 2K1O A; 1B28 A; 3OD2 A; 1Q5V A; 2BNZ A; 1BAZ A; 2K5J A; 2CAD A; 2CPG A; 2K6L A; 2WVD A; 2WVC A; 1QTG A; 2BJ7 A; 2CA9 A; 2BJ1 A; 2BJ9 A; 1MYL A; 2HZA A; 4ME7 E; 3VEB A; 3QOQ A; 4D8J A; 3VEA A; 1B01 A; 1P94 A; 3LGH A; 2K9I A; 2CAJ A; 1BDV A; 1IRQ A; 1U9P A; #chains in the Genus database with same CATH topology 2CAX A; 1SIW A; 3IR7 A; 3H5X A; 1MYK A; 1Q16 A; 2BSQ E; 2H1O E; 1X93 A; 3LJP A; 3GXQ A; 4FXE A; 2BA3 A; 4LQ9 A; 2BNZ A; 1QTG A; 4AAI A; 1B01 A; 3QOQ A; 2UUW A; 3VEA A; 3LGH A; 1BDV A; 4QPX A; 2KOE A; 3H87 C; 2RBF A; 2BJ8 A; 1ARQ A; 2WVE A; 2JXH A; 2KEL A; 3BSO A; 2WVB A; 3SFU A; 4LRV A; 2CPG A; 3UR0 A; 2WVC A; 2BJ7 A; 2UUT A; 2HZA A; 1MYL A; 3NAI A; 2WK4 A; 2CKW A; 2A2B A; 2CAD A; 2KKE A; 3QID A; 3SFG A; 1OHN A; 2JBV A; 3VW4 A; 2WVF A; 3UQS A; 3NNE A; 1PAR A; 2BJ3 A; 3FT7 A; 4NRU A; 2ADL A; 2HZV A; 2BNW A; 3BSN A; 4MJW A; 1Q5V A; 1BAZ A; 3G5O A; 3NAH A; 3UPF A; 2CA9 A; 2BJ9 A; 4ME7 E; 3VEB A; 1SH0 A; 2K9I A; 2WVD A; 2JXI A; 4NRT A; 4HV0 A; 2GPE A; 3FMT A; 1EA4 A; 1MNT A; 3NO7 A; 2JXG A; 2K29 A; 1ARR A; 4O4R A; 1NLA A; 1BDT A; 2Q2K A; 2AY0 A; 1SH3 A; 2K1O A; 1B28 A; 3OD2 A; 2K5J A; 2K6L A; 2B43 A; 4LQ3 A; 2AN7 A; 2BJ1 A; 4D8J A; 1SH2 A; 1P94 A; 2H3A A; 2CAJ A; 3H5Y A; 1IRQ A; 1U9P A; 1OG7 A; #chains in the Genus database with same CATH homology 3H87 C; 2CAX A; 2RBF A; 2JXI A; 4HV0 A; 2GPE A; 3FMT A; 2BJ8 A; 1EA4 A; 1MNT A; 2WVF A; 3VW4 A; 1ARQ A; 2WVE A; 2JXG A; 1MYK A; 2K29 A; 1PAR A; 2BSQ E; 2H1O E; 1ARR A; 1X93 A; 2BJ3 A; 2JXH A; 3GXQ A; 3FT7 A; 4FXE A; 2BA3 A; 2KEL A; 1NLA A; 1BDT A; 2HZV A; 2WVB A; 2AY0 A; 2BNW A; 2K1O A; 1B28 A; 3OD2 A; 1Q5V A; 2BNZ A; 1BAZ A; 2K5J A; 2CAD A; 2CPG A; 2K6L A; 2WVD A; 2WVC A; 1QTG A; 2BJ7 A; 2CA9 A; 2BJ1 A; 2BJ9 A; 1MYL A; 2HZA A; 4ME7 E; 3VEB A; 3QOQ A; 4D8J A; 3VEA A; 1B01 A; 1P94 A; 3LGH A; 2K9I A; 2CAJ A; 1BDV A; 1IRQ A; 1U9P A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
