4MEYE

Crystal structure of escherichia coli rna polymerase holoenzyme
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
89
structure length
89
Chain Sequence
RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA-directed RNA polymerase subunit alpha
publication title Transcription inhibition by the depsipeptide antibiotic salinamide A.
pubmed doi rcsb
source organism Escherichia coli
total genus 23
structure length 89
sequence length 89
chains with identical sequence K
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2013-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 4meyE00
4GZYE 3CQZF 1Y1VF 5E18E 4KN7E 3S14F 3S15F 5IYDF 5D4CE 4BXXF 1I6HF 1Y1WF 3GTOF 3H0GF 2VUMF 5TMCE 1I3QF 3HOVF 4OIRE 4XLPE 3S2DF 1YNJK 4A3BF 1WCMF 1YNNK 4A3CF 2CW0E 4C3JF 5TMFE 4A3JF 2PPBE 3GTGF 3GTMF 2E2IF 2O5IE 2NVQF 1SFOF 2Y0SI 5M3FF 4XSXE 5IP9F 4YFXE 4Q5SE 4BBRF 2B63F 3HKZK 4YFKE 1TWAF 2JA8F 2R93F 4YFNE 4OIOE 4LJZE 1I6VE 4AYBK 4LK0E 1IW7E 3GTJF 3I4MF 1K83F 2R7ZF 4G7OE 3FKIF 3I4NF 5M5XF 1QKLA 2NVXF 3HOXF 4A3KF 5C4JF 5E17E 2E2HF 2E2JF 4X6AF 2R92F 4A3LF 4BY7F 3HOUF 3HOZF 4A3MF 4MQ9E 1I50F 3RZDF 3S2HF 2JA6F 5C3EF 5IYBF 3RZOF 4Y52F 4XLNE 3S1QF 4A3FF 4C2MF 4LLGE 3M3YF 3PO2F 4A3IF 3M4OF 1TWGF 5M5WF 5C44F 3K7AF 5IPLE 5IP7F 3GTPF 2A68E 3S17F 4Q4ZE 4G7HE 5BYHE 5M3MF 4A93F 2O5JE 3S1RF 3H3VG 2WB1I 2JA5F 2YU9F 3GTLF 2A6HE 4MEXE 1ZYRE 1R9TF 4ZH4E 4OINE 4BBSF 5D4EE 4KN4E 3S16F 4OIQE 1TWFF 3S1NF 2A6EE 2BE5E 3HOWF 4A3GF 5FLMF 4A3EF 4JK1E 5M5YF 4BY1F 3DXJE 4Y7NF 4XSZE 3EQLE 3GTKF 2NVTF 1SMYE 4G7ZE 4A3DF 5IYCF 3S1MF 2A69E 4KMUE 3PO3F 2JA7F 2NVYF 3HOYF 4MEYE 4OIPE 1TWCF 1TWHF 4LK1E 5C4XF 2WAQK 3WODE 4C3IF 2PMZK 5FJ8F 5D4DE 3GTQF 1HQME 4YG2E 4C3HF
chains in the Genus database with same CATH superfamily
4A3CE 1Y1VE 3HOWE 3H3VF 4GZYE 3CQZF 1Y1VF 5FLME 4A3EE 5E18E 4KN7E 5M5YE 3S14F 4BY1E 3S15F 5IYDF 5D4CE 4BXXF 1Y1WE 3GTOE 2VUME 1I6HF 1Y1WF 3GTOF 3H0GF 4QIWK 2NVTE 2VUMF 4A3DE 5TMCE 1DZFA 5IYCE 1I3QF 3S1ME 3S2DE 3HOVF 3PO3E 1WCME 4OIRE 4XLPE 2JA7E 3S2DF 2NVYE 1YNJK 3HOYE 4A3BF 1WCMF 1YNNK 4A3CF 1TWCE 1TWHE 2CW0E 4C3JF 5C4XE 5TMFE 4A3JF 2Y0SH 2PPBE 3GTQE 3GTGF 3GTMF 2E2IF 4C3HE 2O5IE 2NVQF 1SFOF 2Y0SI 3CQZE 5M3FF 4XSXE 5IP9F 3S14E 3S15E 4YFXE 5IYDE 4Q5SE 4BBRF 2B63F 4BXXE 3HKZK 4A3LF 4YFKE 1I6HE 3H0GE 1TWAF 2JA8F 1I3QE 2R93F 3HOVE 4YFNE 4OIOE 4LJZE 1I6VE 4AYBK 4LK0E 1IW7E 4A3BE 3FKIE 3GTJF 5M5XE 1K83F 2NVXE 3HOXE 3I4MF 3I4NE 2R7ZF 3FKIF 4G7OE 3I4NF 5M5XF 1QKLA 2NVXF 4C3JE 3HOXF 4A3JE 4A3KF 4X6AE 5C4JF 3GTGE 5E17E 3GTME 2E2HF 2E2JF 4X6AF 2E2IE 2WAQH 2R92F 1I50E 3S2HE 2NVQE 4BY7F 1SFOE 3HOUF 3HOZF 4A3MF 4BY7E 4MQ9E 1I50F 3RZDF 3S2HF 5M3FE 2JA6F 5IP9E 3S1QE 5C3EF 4A3FE 5IYBF 3RZOF 4Y52F 4BBRE 4XLNE 2B63E 4A3FF 3S1QF 4C2MF 4LLGE 3M3YF 3PO2F 4A3IF 3M4OF 5M5WE 1EIKA 1TWAE 1TWGF 5M5WF 2JA8E 5C44F 3K7AF 2R93E 2WB1H 5IP7F 4QIWH 5IPLE 3GTPF 4A93E 2A68E 3S17F 4Q4ZE 4G7HE 5BYHE 5M3MF 4A93F 3GTJE 2JA5E 1K83E 2R7ZE 2YU9E 3S1RF 3H3VG 3I4ME 2O5JE 2WB1I 2JA5F 1R9TE 2YU9F 3GTLF 2A6HE 4A3KE 4MEXE 1ZYRE 1R9TF 4ZH4E 5C4JE 4OINE 4BBSF 2E2HE 2E2JE 3S16E 2R92E 4A3LE 1TWFE 3S1NE 4C3HF 4KN4E 5D4EE 3HOUE 4A3ME 3S16F 4OIQE 3RZDE 1TWFF 3HOZE 3S1NF 2A6EE 2BE5E 2PMZH 2JA6E 3HOWF 5C3EE 4A3GE 4A3GF 5IYBE 5FLMF 4A3EF 4JK1E 3RZOE 4Y52E 5M5YF 4BY1F 3DXJE 4C2ME 4Y7NE 3M3YE 3PO2E 4A3IE 3M4OE 3GTKE 4Y7NF 4XSZE 1TWGE 3EQLE 5C44E 3GTKF 3HKZH 3K7AE 2NVTF 1SMYE 4G7ZE 5IP7E 4A3DF 5IYCF 3GTPE 3S17E 3S1MF 2A69E 4KMUE 5M3ME 3PO3F 2JA7F 2KRXA 3S1RE 2NVYF 3HOYF 4MEYE 4AYBH 3GTLE 1TWCF 1TWHF 4LK1E 4C3IE 5FJ8E 4BBSE 5C4XF 2WAQK 3WODE 4C3IF 2PMZK 5FJ8F 5D4DE 3GTQF 1HQME 4YG2E 4OIPE
chains in the Genus database with same CATH topology
4GZYE 3CQZF 1Y1VF 5E18E 4KN7E 3S14F 3S15F 5IYDF 5D4CE 4BXXF 1I6HF 1Y1WF 3GTOF 3H0GF 4QIWK 2VUMF 5TMCE 1I3QF 3HOVF 4OIRE 4XLPE 3S2DF 1YNJK 4A3BF 1WCMF 1YNNK 4A3CF 2CW0E 4C3JF 5TMFE 4A3JF 2PPBE 3GTGF 3GTMF 2E2IF 2O5IE 2NVQF 1SFOF 2Y0SI 5M3FF 4XSXE 5IP9F 4YFXE 4Q5SE 4BBRF 2B63F 3HKZK 4YFKE 1TWAF 2JA8F 2R93F 4YFNE 4OIOE 4LJZE 1I6VE 4AYBK 4LK0E 1IW7E 3GTJF 3I4MF 1K83F 2R7ZF 4G7OE 3FKIF 3I4NF 5M5XF 1QKLA 2NVXF 3HOXF 4A3KF 5C4JF 5E17E 2E2HF 2E2JF 4X6AF 2R92F 4A3LF 4BY7F 3HOUF 3HOZF 4A3MF 4MQ9E 1I50F 3RZDF 3S2HF 2JA6F 5C3EF 5IYBF 3RZOF 4Y52F 4XLNE 3S1QF 4A3FF 4C2MF 4LLGE 3M3YF 3PO2F 4A3IF 3M4OF 1TWGF 5M5WF 5C44F 3K7AF 5IPLE 5IP7F 3GTPF 2A68E 3S17F 4Q4ZE 4G7HE 5BYHE 5M3MF 4A93F 2O5JE 3S1RF 3H3VG 2WB1I 2JA5F 2YU9F 3GTLF 2A6HE 4MEXE 1ZYRE 1R9TF 4ZH4E 4OINE 4BBSF 5D4EE 4KN4E 3S16F 4OIQE 1TWFF 3S1NF 2A6EE 2BE5E 3HOWF 4A3GF 5FLMF 4A3EF 4JK1E 5M5YF 4BY1F 3DXJE 4Y7NF 4XSZE 3EQLE 3GTKF 2NVTF 1SMYE 4G7ZE 4A3DF 5IYCF 3S1MF 2A69E 4KMUE 3PO3F 2JA7F 2KRXA 2NVYF 3HOYF 4MEYE 4OIPE 1TWCF 1TWHF 4LK1E 5C4XF 2WAQK 3WODE 4C3IF 2PMZK 5FJ8F 5D4DE 3GTQF 1HQME 4YG2E 4C3HF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GZY E;  3CQZ F;  1Y1V F;  5E18 E;  4KN7 E;  3S14 F;  3S15 F;  5IYD F;  5D4C E;  4BXX F;  1I6H F;  1Y1W F;  3GTO F;  3H0G F;  2VUM F;  5TMC E;  1I3Q F;  3HOV F;  4OIR E;  4XLP E;  3S2D F;  1YNJ K;  4A3B F;  1WCM F;  1YNN K;  4A3C F;  2CW0 E;  4C3J F;  5TMF E;  4A3J F;  2PPB E;  3GTG F;  3GTM F;  2E2I F;  2O5I E;  2NVQ F;  1SFO F;  2Y0S I;  5M3F F;  4XSX E;  5IP9 F;  4YFX E;  4Q5S E;  4BBR F;  2B63 F;  3HKZ K;  4YFK E;  1TWA F;  2JA8 F;  2R93 F;  4YFN E;  4OIO E;  4LJZ E;  1I6V E;  4AYB K;  4LK0 E;  1IW7 E;  3GTJ F;  3I4M F;  1K83 F;  2R7Z F;  4G7O E;  3FKI F;  3I4N F;  5M5X F;  1QKL A;  2NVX F;  3HOX F;  4A3K F;  5C4J F;  5E17 E;  2E2H F;  2E2J F;  4X6A F;  2R92 F;  4A3L F;  4BY7 F;  3HOU F;  3HOZ F;  4A3M F;  4MQ9 E;  1I50 F;  3RZD F;  3S2H F;  2JA6 F;  5C3E F;  5IYB F;  3RZO F;  4Y52 F;  4XLN E;  3S1Q F;  4A3F F;  4C2M F;  4LLG E;  3M3Y F;  3PO2 F;  4A3I F;  3M4O F;  1TWG F;  5M5W F;  5C44 F;  3K7A F;  5IPL E;  5IP7 F;  3GTP F;  2A68 E;  3S17 F;  4Q4Z E;  4G7H E;  5BYH E;  5M3M F;  4A93 F;  2O5J E;  3S1R F;  3H3V G;  2WB1 I;  2JA5 F;  2YU9 F;  3GTL F;  2A6H E;  4MEX E;  1ZYR E;  1R9T F;  4ZH4 E;  4OIN E;  4BBS F;  5D4E E;  4KN4 E;  3S16 F;  4OIQ E;  1TWF F;  3S1N F;  2A6E E;  2BE5 E;  3HOW F;  4A3G F;  5FLM F;  4A3E F;  4JK1 E;  5M5Y F;  4BY1 F;  3DXJ E;  4Y7N F;  4XSZ E;  3EQL E;  3GTK F;  2NVT F;  1SMY E;  4G7Z E;  4A3D F;  5IYC F;  3S1M F;  2A69 E;  4KMU E;  3PO3 F;  2JA7 F;  2NVY F;  3HOY F;  4MEY E;  4OIP E;  1TWC F;  1TWH F;  4LK1 E;  5C4X F;  2WAQ K;  3WOD E;  4C3I F;  2PMZ K;  5FJ8 F;  5D4D E;  3GTQ F;  1HQM E;  4YG2 E;  4C3H F; 
#chains in the Genus database with same CATH topology
 4A3C E;  1Y1V E;  3HOW E;  3H3V F;  4GZY E;  3CQZ F;  1Y1V F;  5FLM E;  4A3E E;  5E18 E;  4KN7 E;  5M5Y E;  3S14 F;  4BY1 E;  3S15 F;  5IYD F;  5D4C E;  4BXX F;  1Y1W E;  3GTO E;  2VUM E;  1I6H F;  1Y1W F;  3GTO F;  3H0G F;  4QIW K;  2NVT E;  2VUM F;  4A3D E;  5TMC E;  1DZF A;  5IYC E;  1I3Q F;  3S1M E;  3S2D E;  3HOV F;  3PO3 E;  1WCM E;  4OIR E;  4XLP E;  2JA7 E;  3S2D F;  2NVY E;  1YNJ K;  3HOY E;  4A3B F;  1WCM F;  1YNN K;  4A3C F;  1TWC E;  1TWH E;  2CW0 E;  4C3J F;  5C4X E;  5TMF E;  4A3J F;  2Y0S H;  2PPB E;  3GTQ E;  3GTG F;  3GTM F;  2E2I F;  4C3H E;  2O5I E;  2NVQ F;  1SFO F;  2Y0S I;  3CQZ E;  5M3F F;  4XSX E;  5IP9 F;  3S14 E;  3S15 E;  4YFX E;  5IYD E;  4Q5S E;  4BBR F;  2B63 F;  4BXX E;  3HKZ K;  4A3L F;  4YFK E;  1I6H E;  3H0G E;  1TWA F;  2JA8 F;  1I3Q E;  2R93 F;  3HOV E;  4YFN E;  4OIO E;  4LJZ E;  1I6V E;  4AYB K;  4LK0 E;  1IW7 E;  4A3B E;  3FKI E;  3GTJ F;  5M5X E;  1K83 F;  2NVX E;  3HOX E;  3I4M F;  3I4N E;  2R7Z F;  3FKI F;  4G7O E;  3I4N F;  5M5X F;  1QKL A;  2NVX F;  4C3J E;  3HOX F;  4A3J E;  4A3K F;  4X6A E;  5C4J F;  3GTG E;  5E17 E;  3GTM E;  2E2H F;  2E2J F;  4X6A F;  2E2I E;  2WAQ H;  2R92 F;  1I50 E;  3S2H E;  2NVQ E;  4BY7 F;  1SFO E;  3HOU F;  3HOZ F;  4A3M F;  4BY7 E;  4MQ9 E;  1I50 F;  3RZD F;  3S2H F;  5M3F E;  2JA6 F;  5IP9 E;  3S1Q E;  5C3E F;  4A3F E;  5IYB F;  3RZO F;  4Y52 F;  4BBR E;  4XLN E;  2B63 E;  4A3F F;  3S1Q F;  4C2M F;  4LLG E;  3M3Y F;  3PO2 F;  4A3I F;  3M4O F;  5M5W E;  1EIK A;  1TWA E;  1TWG F;  5M5W F;  2JA8 E;  5C44 F;  3K7A F;  2R93 E;  2WB1 H;  5IP7 F;  4QIW H;  5IPL E;  3GTP F;  4A93 E;  2A68 E;  3S17 F;  4Q4Z E;  4G7H E;  5BYH E;  5M3M F;  4A93 F;  3GTJ E;  2JA5 E;  1K83 E;  2R7Z E;  2YU9 E;  3S1R F;  3H3V G;  3I4M E;  2O5J E;  2WB1 I;  2JA5 F;  1R9T E;  2YU9 F;  3GTL F;  2A6H E;  4A3K E;  4MEX E;  1ZYR E;  1R9T F;  4ZH4 E;  5C4J E;  4OIN E;  4BBS F;  2E2H E;  2E2J E;  3S16 E;  2R92 E;  4A3L E;  1TWF E;  3S1N E;  4C3H F;  4KN4 E;  5D4E E;  3HOU E;  4A3M E;  3S16 F;  4OIQ E;  3RZD E;  1TWF F;  3HOZ E;  3S1N F;  2A6E E;  2BE5 E;  2PMZ H;  2JA6 E;  3HOW F;  5C3E E;  4A3G E;  4A3G F;  5IYB E;  5FLM F;  4A3E F;  4JK1 E;  3RZO E;  4Y52 E;  5M5Y F;  4BY1 F;  3DXJ E;  4C2M E;  4Y7N E;  3M3Y E;  3PO2 E;  4A3I E;  3M4O E;  3GTK E;  4Y7N F;  4XSZ E;  1TWG E;  3EQL E;  5C44 E;  3GTK F;  3HKZ H;  3K7A E;  2NVT F;  1SMY E;  4G7Z E;  5IP7 E;  4A3D F;  5IYC F;  3GTP E;  3S17 E;  3S1M F;  2A69 E;  4KMU E;  5M3M E;  3PO3 F;  2JA7 F;  2KRX A;  3S1R E;  2NVY F;  3HOY F;  4MEY E;  4AYB H;  3GTL E;  1TWC F;  1TWH F;  4LK1 E;  4C3I E;  5FJ8 E;  4BBS E;  5C4X F;  2WAQ K;  3WOD E;  4C3I F;  2PMZ K;  5FJ8 F;  5D4D E;  3GTQ F;  1HQM E;  4YG2 E;  4OIP E; 
#chains in the Genus database with same CATH homology
 4GZY E;  3CQZ F;  1Y1V F;  5E18 E;  4KN7 E;  3S14 F;  3S15 F;  5IYD F;  5D4C E;  4BXX F;  1I6H F;  1Y1W F;  3GTO F;  3H0G F;  4QIW K;  2VUM F;  5TMC E;  1I3Q F;  3HOV F;  4OIR E;  4XLP E;  3S2D F;  1YNJ K;  4A3B F;  1WCM F;  1YNN K;  4A3C F;  2CW0 E;  4C3J F;  5TMF E;  4A3J F;  2PPB E;  3GTG F;  3GTM F;  2E2I F;  2O5I E;  2NVQ F;  1SFO F;  2Y0S I;  5M3F F;  4XSX E;  5IP9 F;  4YFX E;  4Q5S E;  4BBR F;  2B63 F;  3HKZ K;  4YFK E;  1TWA F;  2JA8 F;  2R93 F;  4YFN E;  4OIO E;  4LJZ E;  1I6V E;  4AYB K;  4LK0 E;  1IW7 E;  3GTJ F;  3I4M F;  1K83 F;  2R7Z F;  4G7O E;  3FKI F;  3I4N F;  5M5X F;  1QKL A;  2NVX F;  3HOX F;  4A3K F;  5C4J F;  5E17 E;  2E2H F;  2E2J F;  4X6A F;  2R92 F;  4A3L F;  4BY7 F;  3HOU F;  3HOZ F;  4A3M F;  4MQ9 E;  1I50 F;  3RZD F;  3S2H F;  2JA6 F;  5C3E F;  5IYB F;  3RZO F;  4Y52 F;  4XLN E;  3S1Q F;  4A3F F;  4C2M F;  4LLG E;  3M3Y F;  3PO2 F;  4A3I F;  3M4O F;  1TWG F;  5M5W F;  5C44 F;  3K7A F;  5IPL E;  5IP7 F;  3GTP F;  2A68 E;  3S17 F;  4Q4Z E;  4G7H E;  5BYH E;  5M3M F;  4A93 F;  2O5J E;  3S1R F;  3H3V G;  2WB1 I;  2JA5 F;  2YU9 F;  3GTL F;  2A6H E;  4MEX E;  1ZYR E;  1R9T F;  4ZH4 E;  4OIN E;  4BBS F;  5D4E E;  4KN4 E;  3S16 F;  4OIQ E;  1TWF F;  3S1N F;  2A6E E;  2BE5 E;  3HOW F;  4A3G F;  5FLM F;  4A3E F;  4JK1 E;  5M5Y F;  4BY1 F;  3DXJ E;  4Y7N F;  4XSZ E;  3EQL E;  3GTK F;  2NVT F;  1SMY E;  4G7Z E;  4A3D F;  5IYC F;  3S1M F;  2A69 E;  4KMU E;  3PO3 F;  2JA7 F;  2KRX A;  2NVY F;  3HOY F;  4MEY E;  4OIP E;  1TWC F;  1TWH F;  4LK1 E;  5C4X F;  2WAQ K;  3WOD E;  4C3I F;  2PMZ K;  5FJ8 F;  5D4D E;  3GTQ F;  1HQM E;  4YG2 E;  4C3H F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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