4MLAA

Structure of maize cytokinin oxidase/dehydrogenase 2 (zmcko2)
Total Genus 146
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
487
structure length
477
Chain Sequence
DMLSPLGALRLDGHFSFHDVSAMARDFGNQCSFLPAAVLHPGSVSDIAATVRHVFSLGEGSPLTVAARGHGHSLMGQSQAAQGIVVRMESLRGARLQVHDGFVDAPGGELWINVLRETLKHGLAPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQVSNVNQLEIVTGRGDVVTCSPEDNSDLFYAALGGLGQFGIITRARIALEPAPEMVRWIRVLYSDFESFTEDQEMLIMAENSFDYIEGFVIINRTGILNNWRASFKPQDPRVLYCLELTKNFNSGDTDTMEQEVAVLLSRLRFIQSTLFHTDVTYLEFLDRVHTSELKLRAQSLWEVPHPWLNLLIPRSSIRRFATEVFGRILKDSNNGPILLYPVNKSKWDNKTSVVIPDEEIFYLVGFLSSAPSLSGHGSIAHAMSLNSQIVEFCEEADIGMKQYLAHYTTQEQWKTHFGARWETFERRKHRYDPLAILAPGQRIFPKASL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
molecule keywords Cytokinin oxidase 2
total genus 146
structure length 477
sequence length 487
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4mlaA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4mlaA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 4mlaA03
5G5GB 5ADZA 2VFRA 3I99A 1E8GA 2VAOA 2W3SA 1N61C 3TSJA 4BBYA 5FXPA 2MBRA 3NVVB 1W1RA 3TSHA 3FW8A 2Q85A 4PVJA 4PYTA 5AE3A 1DIIA 1ZXIC 1AHUA 3AN1A 3SR6B 1WVFA 2R2ZA 1FFUC 3HRDC 4DNSA 1DIQA 3D2JA 1W1SA 3AMZA 1E8FA 2OAIA 1W1MA 3JS8A 2Q4WA 2O3GA 3BW7A 3DEDA 1W1JA 4BCAA 3LAEA 4MLAA 1N60C 3ETRB 1I19A 1MBTA 1E8HA 3NVWB 4ML8A 2W3RA 5HQXA 4PWBA 3S1DA 1AHVA 3W8XA 3TX1A 1WYGA 2EXRA 2VFSA 3DQ0A 1N62C 4BC9A 2E3TA 1FFVC 5HHZA 4PZFA 4PVHA 5G5HB 4XLOA 1ZR6A 2NQWA 2YVSA 1VDVA 2VFTA 2BVHA 3S1EA 3VTEA 3NVYB 2GQUA 2QPMA 2AXRA 2R8DA 3GSYA 2BVGA 3FW7A 4EC3A 1WVEA 3LLBA 2PLSA 1VAOA 2P4PA 4BC7A 1JROA 1SB3B 3C0PA 4HG0A 3W8WA 3FWAA 2RK5A 1W1QA 3NS1B 1T3QC 2I0KA 2QKNA 5HMRA 3W8ZA 1W1LA 3B9JB 1E0YA 1V97A 3AM9A 3FW9A 3D2HA 2BVFA 1F0XA 3NRZB 1FIQB 4PVKA 3KJMA 2P3HA 5D79A 4JB1A 2W54A 1QLTA 3EUB3 4PWCA 2VFVA 3S1CA 3S1FA 3NVZB 1UXYA 5FXFA 5AE2A 1N5WC 1QLUA 1W1KA 2VFUA 3PM9A 4PVEA 5FXDA 1MBBA 2P13A 1JRPA 4ZOHB 4OALA 5AE1A 2PLIA 4O95A 1N63C 1AHZA 1DZNA 2GQTA 1N5XA 4UD8A 1HSKA 1FO4A 5FXEA 1RM6B 1W1OA 2W55A 4JAYA 3D2DA
chains in the Genus database with same CATH superfamily
5G5GB 5ADZA 2VFRA 3I99A 5I1VA 1E8GA 2VAOA 5I1WA 2W3SA 1N61C 3TSJA 4BBYA 5FXPA 2MBRA 3NVVB 1W1RA 3TSHA 3FW8A 2Q85A 4PVJA 4PYTA 2Y4GA 5AE3A 1DIIA 1ZXIC 1AHUA 3AN1A 3SR6B 1WVFA 2R2ZA 1FFUC 3HRDC 3EJBB 4DNSA 1DIQA 3D2JA 1W1SA 3AMZA 3PQBA 1E8FA 2OAIA 1W1MA 3POPA 3JS8A 2Q4WA 2O3GA 3BW7A 3RJ8A 2UUVA 3DEDA 1W1JA 3EJEB 4BCAA 3LAEA 4MLAA 2WDWA 1N60C 3ETRB 1I19A 1MBTA 1E8HA 3NVWB 4ML8A 2W3RA 5HQXA 4PWBA 3S1DA 1AHVA 3W8XA 3TX1A 1WYGA 2EXRA 2VFSA 3DQ0A 5L6GA 1N62C 4BC9A 2E3TA 1FFVC 5HHZA 4PZFA 4PVHA 3EJDB 5G5HB 2IPIA 4XLOA 1ZR6A 2NQWA 2YVSA 1VDVA 2VFTA 2BVHA 3S1EA 3VTEA 3NVYB 2GQUA 2QPMA 2AXRA 2R8DA 3GSYA 2BVGA 3FW7A 5AWVA 5L6FA 4EC3A 1WVEA 3LLBA 2PLSA 1VAOA 2P4PA 4BC7A 1JROA 1SB3B 3C0PA 4HG0A 3W8WA 3FWAA 2RK5A 1W1QA 3NS1B 1T3QC 2I0KA 2QKNA 5HMRA 3W8ZA 1W1LA 5K8EA 3B9JB 1E0YA 3RJAA 1V97A 3AM9A 3FW9A 3D2HA 2BVFA 1F0XA 3NRZB 1FIQB 4PVKA 3KJMA 2P3HA 3HSUA 5D79A 4JB1A 2Y08A 2W54A 1QLTA 3EUB3 4PWCA 2VFVA 3S1CA 3S1FA 2UUUA 3NVZB 1UXYA 5FXFA 5AE2A 1N5WC 1QLUA 1W1KA 2VFUA 3PM9A 4PVEA 5FXDA 2Y3RA 1MBBA 2P13A 1JRPA 4ZOHB 4OALA 5AE1A 2PLIA 4O95A 1N63C 1AHZA 2Y3SA 1DZNA 2GQTA 1N5XA 4UD8A 1HSKA 1FO4A 5FXEA 1RM6B 1W1OA 2W55A 4JAYA 3D2DA
chains in the Genus database with same CATH topology
5G5GB 5ADZA 2VFRA 3I99A 5I1VA 1E8GA 2VAOA 5I1WA 2W3SA 1N61C 3TSJA 4BBYA 5FXPA 2MBRA 3NVVB 1W1RA 3TSHA 3FW8A 2Q85A 4PVJA 4PYTA 2Y4GA 5AE3A 1DIIA 1ZXIC 1AHUA 3AN1A 3SR6B 1WVFA 2R2ZA 1FFUC 3HRDC 4DNSA 1DIQA 3D2JA 1W1SA 3AMZA 3PQBA 1E8FA 2OAIA 1W1MA 3POPA 3JS8A 2Q4WA 2O3GA 3BW7A 3RJ8A 2UUVA 3DEDA 1W1JA 4BCAA 3LAEA 4MLAA 2WDWA 1N60C 3ETRB 1I19A 1MBTA 1E8HA 3NVWB 4ML8A 2W3RA 5HQXA 4PWBA 3S1DA 1AHVA 3W8XA 3TX1A 1WYGA 2EXRA 2VFSA 3DQ0A 5L6GA 1N62C 4BC9A 2E3TA 1FFVC 5HHZA 4PZFA 4PVHA 5G5HB 2IPIA 4XLOA 1ZR6A 2NQWA 2YVSA 1VDVA 2VFTA 2BVHA 3S1EA 3VTEA 3NVYB 2GQUA 2QPMA 2AXRA 2R8DA 3GSYA 2BVGA 3FW7A 5AWVA 5L6FA 4EC3A 1WVEA 3LLBA 2PLSA 1VAOA 2P4PA 4BC7A 1JROA 1SB3B 3C0PA 4HG0A 3W8WA 3FWAA 2RK5A 1W1QA 3NS1B 1T3QC 2I0KA 2QKNA 5HMRA 3W8ZA 1W1LA 5K8EA 3B9JB 1E0YA 3RJAA 1V97A 3AM9A 3FW9A 3D2HA 2BVFA 1F0XA 3NRZB 1FIQB 4PVKA 3KJMA 2P3HA 3HSUA 5D79A 4JB1A 2Y08A 2W54A 1QLTA 3EUB3 4PWCA 2VFVA 3S1CA 3S1FA 2UUUA 3NVZB 1UXYA 5FXFA 5AE2A 1N5WC 1QLUA 1W1KA 2VFUA 3PM9A 4PVEA 5FXDA 2Y3RA 1MBBA 2P13A 1JRPA 4ZOHB 4OALA 5AE1A 2PLIA 4O95A 1N63C 1AHZA 2Y3SA 1DZNA 2GQTA 1N5XA 4UD8A 1HSKA 1FO4A 5FXEA 1RM6B 1W1OA 2W55A 4JAYA 3D2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5G5G B;  5ADZ A;  2VFR A;  3I99 A;  1E8G A;  2VAO A;  2W3S A;  1N61 C;  3TSJ A;  4BBY A;  5FXP A;  2MBR A;  3NVV B;  1W1R A;  3TSH A;  3FW8 A;  2Q85 A;  4PVJ A;  4PYT A;  5AE3 A;  1DII A;  1ZXI C;  1AHU A;  3AN1 A;  3SR6 B;  1WVF A;  2R2Z A;  1FFU C;  3HRD C;  4DNS A;  1DIQ A;  3D2J A;  1W1S A;  3AMZ A;  1E8F A;  2OAI A;  1W1M A;  3JS8 A;  2Q4W A;  2O3G A;  3BW7 A;  3DED A;  1W1J A;  4BCA A;  3LAE A;  4MLA A;  1N60 C;  3ETR B;  1I19 A;  1MBT A;  1E8H A;  3NVW B;  4ML8 A;  2W3R A;  5HQX A;  4PWB A;  3S1D A;  1AHV A;  3W8X A;  3TX1 A;  1WYG A;  2EXR A;  2VFS A;  3DQ0 A;  1N62 C;  4BC9 A;  2E3T A;  1FFV C;  5HHZ A;  4PZF A;  4PVH A;  5G5H B;  4XLO A;  1ZR6 A;  2NQW A;  2YVS A;  1VDV A;  2VFT A;  2BVH A;  3S1E A;  3VTE A;  3NVY B;  2GQU A;  2QPM A;  2AXR A;  2R8D A;  3GSY A;  2BVG A;  3FW7 A;  4EC3 A;  1WVE A;  3LLB A;  2PLS A;  1VAO A;  2P4P A;  4BC7 A;  1JRO A;  1SB3 B;  3C0P A;  4HG0 A;  3W8W A;  3FWA A;  2RK5 A;  1W1Q A;  3NS1 B;  1T3Q C;  2I0K A;  2QKN A;  5HMR A;  3W8Z A;  1W1L A;  3B9J B;  1E0Y A;  1V97 A;  3AM9 A;  3FW9 A;  3D2H A;  2BVF A;  1F0X A;  3NRZ B;  1FIQ B;  4PVK A;  3KJM A;  2P3H A;  5D79 A;  4JB1 A;  2W54 A;  1QLT A;  3EUB 3;  4PWC A;  2VFV A;  3S1C A;  3S1F A;  3NVZ B;  1UXY A;  5FXF A;  5AE2 A;  1N5W C;  1QLU A;  1W1K A;  2VFU A;  3PM9 A;  4PVE A;  5FXD A;  1MBB A;  2P13 A;  1JRP A;  4ZOH B;  4OAL A;  5AE1 A;  2PLI A;  4O95 A;  1N63 C;  1AHZ A;  1DZN A;  2GQT A;  1N5X A;  4UD8 A;  1HSK A;  1FO4 A;  5FXE A;  1RM6 B;  1W1O A;  2W55 A;  4JAY A;  3D2D A; 
#chains in the Genus database with same CATH topology
 5G5G B;  5ADZ A;  2VFR A;  3I99 A;  5I1V A;  1E8G A;  2VAO A;  5I1W A;  2W3S A;  1N61 C;  3TSJ A;  4BBY A;  5FXP A;  2MBR A;  3NVV B;  1W1R A;  3TSH A;  3FW8 A;  2Q85 A;  4PVJ A;  4PYT A;  2Y4G A;  5AE3 A;  1DII A;  1ZXI C;  1AHU A;  3AN1 A;  3SR6 B;  1WVF A;  2R2Z A;  1FFU C;  3HRD C;  3EJB B;  4DNS A;  1DIQ A;  3D2J A;  1W1S A;  3AMZ A;  3PQB A;  1E8F A;  2OAI A;  1W1M A;  3POP A;  3JS8 A;  2Q4W A;  2O3G A;  3BW7 A;  3RJ8 A;  2UUV A;  3DED A;  1W1J A;  3EJE B;  4BCA A;  3LAE A;  4MLA A;  2WDW A;  1N60 C;  3ETR B;  1I19 A;  1MBT A;  1E8H A;  3NVW B;  4ML8 A;  2W3R A;  5HQX A;  4PWB A;  3S1D A;  1AHV A;  3W8X A;  3TX1 A;  1WYG A;  2EXR A;  2VFS A;  3DQ0 A;  5L6G A;  1N62 C;  4BC9 A;  2E3T A;  1FFV C;  5HHZ A;  4PZF A;  4PVH A;  3EJD B;  5G5H B;  2IPI A;  4XLO A;  1ZR6 A;  2NQW A;  2YVS A;  1VDV A;  2VFT A;  2BVH A;  3S1E A;  3VTE A;  3NVY B;  2GQU A;  2QPM A;  2AXR A;  2R8D A;  3GSY A;  2BVG A;  3FW7 A;  5AWV A;  5L6F A;  4EC3 A;  1WVE A;  3LLB A;  2PLS A;  1VAO A;  2P4P A;  4BC7 A;  1JRO A;  1SB3 B;  3C0P A;  4HG0 A;  3W8W A;  3FWA A;  2RK5 A;  1W1Q A;  3NS1 B;  1T3Q C;  2I0K A;  2QKN A;  5HMR A;  3W8Z A;  1W1L A;  5K8E A;  3B9J B;  1E0Y A;  3RJA A;  1V97 A;  3AM9 A;  3FW9 A;  3D2H A;  2BVF A;  1F0X A;  3NRZ B;  1FIQ B;  4PVK A;  3KJM A;  2P3H A;  3HSU A;  5D79 A;  4JB1 A;  2Y08 A;  2W54 A;  1QLT A;  3EUB 3;  4PWC A;  2VFV A;  3S1C A;  3S1F A;  2UUU A;  3NVZ B;  1UXY A;  5FXF A;  5AE2 A;  1N5W C;  1QLU A;  1W1K A;  2VFU A;  3PM9 A;  4PVE A;  5FXD A;  2Y3R A;  1MBB A;  2P13 A;  1JRP A;  4ZOH B;  4OAL A;  5AE1 A;  2PLI A;  4O95 A;  1N63 C;  1AHZ A;  2Y3S A;  1DZN A;  2GQT A;  1N5X A;  4UD8 A;  1HSK A;  1FO4 A;  5FXE A;  1RM6 B;  1W1O A;  2W55 A;  4JAY A;  3D2D A; 
#chains in the Genus database with same CATH homology
 5G5G B;  5ADZ A;  2VFR A;  3I99 A;  5I1V A;  1E8G A;  2VAO A;  5I1W A;  2W3S A;  1N61 C;  3TSJ A;  4BBY A;  5FXP A;  2MBR A;  3NVV B;  1W1R A;  3TSH A;  3FW8 A;  2Q85 A;  4PVJ A;  4PYT A;  2Y4G A;  5AE3 A;  1DII A;  1ZXI C;  1AHU A;  3AN1 A;  3SR6 B;  1WVF A;  2R2Z A;  1FFU C;  3HRD C;  4DNS A;  1DIQ A;  3D2J A;  1W1S A;  3AMZ A;  3PQB A;  1E8F A;  2OAI A;  1W1M A;  3POP A;  3JS8 A;  2Q4W A;  2O3G A;  3BW7 A;  3RJ8 A;  2UUV A;  3DED A;  1W1J A;  4BCA A;  3LAE A;  4MLA A;  2WDW A;  1N60 C;  3ETR B;  1I19 A;  1MBT A;  1E8H A;  3NVW B;  4ML8 A;  2W3R A;  5HQX A;  4PWB A;  3S1D A;  1AHV A;  3W8X A;  3TX1 A;  1WYG A;  2EXR A;  2VFS A;  3DQ0 A;  5L6G A;  1N62 C;  4BC9 A;  2E3T A;  1FFV C;  5HHZ A;  4PZF A;  4PVH A;  5G5H B;  2IPI A;  4XLO A;  1ZR6 A;  2NQW A;  2YVS A;  1VDV A;  2VFT A;  2BVH A;  3S1E A;  3VTE A;  3NVY B;  2GQU A;  2QPM A;  2AXR A;  2R8D A;  3GSY A;  2BVG A;  3FW7 A;  5AWV A;  5L6F A;  4EC3 A;  1WVE A;  3LLB A;  2PLS A;  1VAO A;  2P4P A;  4BC7 A;  1JRO A;  1SB3 B;  3C0P A;  4HG0 A;  3W8W A;  3FWA A;  2RK5 A;  1W1Q A;  3NS1 B;  1T3Q C;  2I0K A;  2QKN A;  5HMR A;  3W8Z A;  1W1L A;  5K8E A;  3B9J B;  1E0Y A;  3RJA A;  1V97 A;  3AM9 A;  3FW9 A;  3D2H A;  2BVF A;  1F0X A;  3NRZ B;  1FIQ B;  4PVK A;  3KJM A;  2P3H A;  3HSU A;  5D79 A;  4JB1 A;  2Y08 A;  2W54 A;  1QLT A;  3EUB 3;  4PWC A;  2VFV A;  3S1C A;  3S1F A;  2UUU A;  3NVZ B;  1UXY A;  5FXF A;  5AE2 A;  1N5W C;  1QLU A;  1W1K A;  2VFU A;  3PM9 A;  4PVE A;  5FXD A;  2Y3R A;  1MBB A;  2P13 A;  1JRP A;  4ZOH B;  4OAL A;  5AE1 A;  2PLI A;  4O95 A;  1N63 C;  1AHZ A;  2Y3S A;  1DZN A;  2GQT A;  1N5X A;  4UD8 A;  1HSK A;  1FO4 A;  5FXE A;  1RM6 B;  1W1O A;  2W55 A;  4JAY A;  3D2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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