4MLAA

Structure of maize cytokinin oxidase/dehydrogenase 2 (zmcko2)
Total Genus 146
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
487
structure length
477
Chain Sequence
DMLSPLGALRLDGHFSFHDVSAMARDFGNQCSFLPAAVLHPGSVSDIAATVRHVFSLGEGSPLTVAARGHGHSLMGQSQAAQGIVVRMESLRGARLQVHDGFVDAPGGELWINVLRETLKHGLAPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQVSNVNQLEIVTGRGDVVTCSPEDNSDLFYAALGGLGQFGIITRARIALEPAPEMVRWIRVLYSDFESFTEDQEMLIMAENSFDYIEGFVIINRTGILNNWRASFKPQDPRVLYCLELTKNFNSGDTDTMEQEVAVLLSRLRFIQSTLFHTDVTYLEFLDRVHTSELKLRAQSLWEVPHPWLNLLIPRSSIRRFATEVFGRILKDSNNGPILLYPVNKSKWDNKTSVVIPDEEIFYLVGFLSSAPSLSGHGSIAHAMSLNSQIVEFCEEADIGMKQYLAHYTTQEQWKTHFGARWETFERRKHRYDPLAILAPGQRIFPKASL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
pubmed doi rcsb
source organism Zea mays
molecule tags Oxidoreductase
molecule keywords Cytokinin oxidase 2
total genus 146
structure length 477
sequence length 487
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4mlaA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4mlaA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 4mlaA03
2R2ZA 5D79A 3DEDA 1QLTA 2P3HA 3LAEA 3VTEA 2YVSA 1MBBA 2MBRA 4PVEA 2PLIA 4PVKA 2P13A 4O95A 1W1RA 2Q4WA 3AMZA 1HSKA 2EXRA 1N62C 2QPMA 1WVFA 3NVYB 3PM9A 2BVGA 1MBTA 3DQ0A 4PVJA 3S1EA 1E8HA 1T3QC 1N63C 3EUB3 3FWAA 1N5XA 2GQUA 3AM9A 4PWBA 1AHUA 1W1KA 2VAOA 4JAYA 1FFVC 3S1DA 2O3GA 2VFUA 1ZXIC 4PWCA 1VDVA 3BW7A 5AE1A 3I99A 2W3RA 1RM6B 5ADZA 1E8GA 3JS8A 2W3SA 1DIQA 2OAIA 1QLUA 1FO4A 3LLBA 5G5GB 2VFTA 1DIIA 1W1QA 1N61C 4PYTA 1N5WC 4OALA 1W1SA 1FFUC 2VFRA 4ZOHB 3B9JB 3HRDC 3D2JA 1E0YA 3W8WA 1W1OA 3S1CA 5FXDA 5HHZA 2W55A 5AE2A 4HG0A 1AHZA 2AXRA 3D2DA 1JROA 2PLSA 1W1MA 1V97A 5FXFA 4BBYA 5HMRA 3W8XA 4ML8A 2W54A 2R8DA 2RK5A 1AHVA 3C0PA 2BVHA 2I0KA 5FXPA 1W1JA 3TSHA 2NQWA 1WYGA 2GQTA 3FW9A 4DNSA 4BC7A 2P4PA 4BCAA 4PZFA 1DZNA 2E3TA 2QKNA 1I19A 3NS1B 3TX1A 4EC3A 1VAOA 3NVWB 4MLAA 3AN1A 5FXEA 4UD8A 4XLOA 3NRZB 2BVFA 3SR6B 5G5HB 3KJMA 1W1LA 4PVHA 5HQXA 1WVEA 3FW7A 3D2HA 1FIQB 1ZR6A 1N60C 2VFSA 1UXYA 3NVZB 1F0XA 3FW8A 3GSYA 4BC9A 1E8FA 3TSJA 3NVVB 5AE3A 3W8ZA 1SB3B 4JB1A 2VFVA 3ETRB 2Q85A 1JRPA 3S1FA
chains in the Genus database with same CATH superfamily
2R2ZA 5D79A 3DEDA 1QLTA 2P3HA 3LAEA 3VTEA 2YVSA 1MBBA 2MBRA 4PVEA 2PLIA 5AWVA 4PVKA 3EJEB 4O95A 1W1RA 2P13A 2Q4WA 3AMZA 1HSKA 3RJAA 2EXRA 1N62C 2QPMA 1WVFA 3NVYB 3PM9A 2Y08A 2BVGA 1MBTA 3DQ0A 4PVJA 3S1EA 1E8HA 1T3QC 1N63C 3EUB3 3FWAA 1N5XA 2GQUA 3AM9A 4PWBA 1AHUA 1W1KA 2VAOA 4JAYA 1FFVC 3S1DA 2O3GA 2VFUA 1ZXIC 4PWCA 1VDVA 3BW7A 5AE1A 3RJ8A 5L6GA 3I99A 2W3RA 3POPA 1RM6B 5ADZA 1E8GA 3JS8A 2W3SA 1DIQA 2OAIA 1QLUA 1FO4A 3LLBA 5G5GB 2VFTA 1DIIA 1W1QA 1N61C 4PYTA 1N5WC 2IPIA 2UUVA 4OALA 1W1SA 1FFUC 2VFRA 4ZOHB 3B9JB 3HRDC 3D2JA 3PQBA 1E0YA 3W8WA 1W1OA 3S1CA 5FXDA 5HHZA 2W55A 3EJDB 5AE2A 4HG0A 2Y3RA 1AHZA 2AXRA 3D2DA 1JROA 2PLSA 1W1MA 1V97A 5FXFA 4BBYA 5HMRA 3W8XA 4ML8A 3EJBB 2W54A 2R8DA 2RK5A 1AHVA 3C0PA 2BVHA 2Y4GA 2I0KA 5FXPA 1W1JA 3TSHA 2NQWA 3HSUA 5I1VA 1WYGA 2GQTA 3FW9A 4DNSA 4BC7A 2P4PA 5I1WA 4BCAA 5K8EA 4PZFA 5L6FA 1DZNA 2E3TA 2QKNA 1I19A 3NS1B 3TX1A 4EC3A 1VAOA 3NVWB 4MLAA 3AN1A 5FXEA 4UD8A 4XLOA 3NRZB 2BVFA 3SR6B 5G5HB 3KJMA 1W1LA 4PVHA 5HQXA 2UUUA 1WVEA 3FW7A 3D2HA 1FIQB 1ZR6A 1N60C 2VFSA 2WDWA 1UXYA 3NVZB 1F0XA 3FW8A 3GSYA 4BC9A 1E8FA 3TSJA 3NVVB 5AE3A 3W8ZA 1SB3B 2Y3SA 4JB1A 2VFVA 3ETRB 2Q85A 1JRPA 3S1FA
chains in the Genus database with same CATH topology
2R2ZA 5D79A 3DEDA 1QLTA 2P3HA 3LAEA 3VTEA 2YVSA 1MBBA 2MBRA 4PVEA 2PLIA 5AWVA 4PVKA 2P13A 4O95A 1W1RA 2Q4WA 3AMZA 1HSKA 3RJAA 2EXRA 1N62C 2QPMA 1WVFA 3NVYB 3PM9A 2Y08A 2BVGA 1MBTA 3DQ0A 4PVJA 3S1EA 1E8HA 1T3QC 1N63C 3EUB3 3FWAA 1N5XA 2GQUA 3AM9A 4PWBA 1AHUA 1W1KA 2VAOA 4JAYA 1FFVC 3S1DA 2O3GA 2VFUA 1ZXIC 4PWCA 1VDVA 3BW7A 5AE1A 3RJ8A 5L6GA 3I99A 2W3RA 3POPA 1RM6B 5ADZA 1E8GA 3JS8A 2W3SA 1DIQA 2OAIA 1QLUA 1FO4A 3LLBA 5G5GB 2VFTA 1DIIA 1W1QA 1N61C 4PYTA 1N5WC 2IPIA 2UUVA 4OALA 1W1SA 1FFUC 2VFRA 4ZOHB 3B9JB 3HRDC 3D2JA 3PQBA 1E0YA 3W8WA 1W1OA 3S1CA 5FXDA 5HHZA 2W55A 5AE2A 4HG0A 2Y3RA 1AHZA 2AXRA 3D2DA 1JROA 2PLSA 1W1MA 1V97A 5FXFA 4BBYA 5HMRA 3W8XA 4ML8A 2W54A 2R8DA 2RK5A 1AHVA 3C0PA 2BVHA 2Y4GA 2I0KA 5FXPA 1W1JA 3TSHA 2NQWA 3HSUA 5I1VA 1WYGA 2GQTA 3FW9A 4DNSA 4BC7A 2P4PA 5I1WA 4BCAA 5K8EA 4PZFA 5L6FA 1DZNA 2E3TA 2QKNA 1I19A 3NS1B 3TX1A 4EC3A 1VAOA 3NVWB 4MLAA 3AN1A 5FXEA 4UD8A 4XLOA 3NRZB 2BVFA 3SR6B 5G5HB 3KJMA 1W1LA 4PVHA 5HQXA 2UUUA 1WVEA 3FW7A 3D2HA 1FIQB 1ZR6A 1N60C 2VFSA 2WDWA 1UXYA 3NVZB 1F0XA 3FW8A 3GSYA 4BC9A 1E8FA 3TSJA 3NVVB 5AE3A 3W8ZA 1SB3B 2Y3SA 4JB1A 2VFVA 3ETRB 2Q85A 1JRPA 3S1FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R2Z A;  5D79 A;  3DED A;  1QLT A;  2P3H A;  3LAE A;  3VTE A;  2YVS A;  1MBB A;  2MBR A;  4PVE A;  2PLI A;  4PVK A;  2P13 A;  4O95 A;  1W1R A;  2Q4W A;  3AMZ A;  1HSK A;  2EXR A;  1N62 C;  2QPM A;  1WVF A;  3NVY B;  3PM9 A;  2BVG A;  1MBT A;  3DQ0 A;  4PVJ A;  3S1E A;  1E8H A;  1T3Q C;  1N63 C;  3EUB 3;  3FWA A;  1N5X A;  2GQU A;  3AM9 A;  4PWB A;  1AHU A;  1W1K A;  2VAO A;  4JAY A;  1FFV C;  3S1D A;  2O3G A;  2VFU A;  1ZXI C;  4PWC A;  1VDV A;  3BW7 A;  5AE1 A;  3I99 A;  2W3R A;  1RM6 B;  5ADZ A;  1E8G A;  3JS8 A;  2W3S A;  1DIQ A;  2OAI A;  1QLU A;  1FO4 A;  3LLB A;  5G5G B;  2VFT A;  1DII A;  1W1Q A;  1N61 C;  4PYT A;  1N5W C;  4OAL A;  1W1S A;  1FFU C;  2VFR A;  4ZOH B;  3B9J B;  3HRD C;  3D2J A;  1E0Y A;  3W8W A;  1W1O A;  3S1C A;  5FXD A;  5HHZ A;  2W55 A;  5AE2 A;  4HG0 A;  1AHZ A;  2AXR A;  3D2D A;  1JRO A;  2PLS A;  1W1M A;  1V97 A;  5FXF A;  4BBY A;  5HMR A;  3W8X A;  4ML8 A;  2W54 A;  2R8D A;  2RK5 A;  1AHV A;  3C0P A;  2BVH A;  2I0K A;  5FXP A;  1W1J A;  3TSH A;  2NQW A;  1WYG A;  2GQT A;  3FW9 A;  4DNS A;  4BC7 A;  2P4P A;  4BCA A;  4PZF A;  1DZN A;  2E3T A;  2QKN A;  1I19 A;  3NS1 B;  3TX1 A;  4EC3 A;  1VAO A;  3NVW B;  4MLA A;  3AN1 A;  5FXE A;  4UD8 A;  4XLO A;  3NRZ B;  2BVF A;  3SR6 B;  5G5H B;  3KJM A;  1W1L A;  4PVH A;  5HQX A;  1WVE A;  3FW7 A;  3D2H A;  1FIQ B;  1ZR6 A;  1N60 C;  2VFS A;  1UXY A;  3NVZ B;  1F0X A;  3FW8 A;  3GSY A;  4BC9 A;  1E8F A;  3TSJ A;  3NVV B;  5AE3 A;  3W8Z A;  1SB3 B;  4JB1 A;  2VFV A;  3ETR B;  2Q85 A;  1JRP A;  3S1F A; 
#chains in the Genus database with same CATH topology
 2R2Z A;  5D79 A;  3DED A;  1QLT A;  2P3H A;  3LAE A;  3VTE A;  2YVS A;  1MBB A;  2MBR A;  4PVE A;  2PLI A;  5AWV A;  4PVK A;  3EJE B;  4O95 A;  1W1R A;  2P13 A;  2Q4W A;  3AMZ A;  1HSK A;  3RJA A;  2EXR A;  1N62 C;  2QPM A;  1WVF A;  3NVY B;  3PM9 A;  2Y08 A;  2BVG A;  1MBT A;  3DQ0 A;  4PVJ A;  3S1E A;  1E8H A;  1T3Q C;  1N63 C;  3EUB 3;  3FWA A;  1N5X A;  2GQU A;  3AM9 A;  4PWB A;  1AHU A;  1W1K A;  2VAO A;  4JAY A;  1FFV C;  3S1D A;  2O3G A;  2VFU A;  1ZXI C;  4PWC A;  1VDV A;  3BW7 A;  5AE1 A;  3RJ8 A;  5L6G A;  3I99 A;  2W3R A;  3POP A;  1RM6 B;  5ADZ A;  1E8G A;  3JS8 A;  2W3S A;  1DIQ A;  2OAI A;  1QLU A;  1FO4 A;  3LLB A;  5G5G B;  2VFT A;  1DII A;  1W1Q A;  1N61 C;  4PYT A;  1N5W C;  2IPI A;  2UUV A;  4OAL A;  1W1S A;  1FFU C;  2VFR A;  4ZOH B;  3B9J B;  3HRD C;  3D2J A;  3PQB A;  1E0Y A;  3W8W A;  1W1O A;  3S1C A;  5FXD A;  5HHZ A;  2W55 A;  3EJD B;  5AE2 A;  4HG0 A;  2Y3R A;  1AHZ A;  2AXR A;  3D2D A;  1JRO A;  2PLS A;  1W1M A;  1V97 A;  5FXF A;  4BBY A;  5HMR A;  3W8X A;  4ML8 A;  3EJB B;  2W54 A;  2R8D A;  2RK5 A;  1AHV A;  3C0P A;  2BVH A;  2Y4G A;  2I0K A;  5FXP A;  1W1J A;  3TSH A;  2NQW A;  3HSU A;  5I1V A;  1WYG A;  2GQT A;  3FW9 A;  4DNS A;  4BC7 A;  2P4P A;  5I1W A;  4BCA A;  5K8E A;  4PZF A;  5L6F A;  1DZN A;  2E3T A;  2QKN A;  1I19 A;  3NS1 B;  3TX1 A;  4EC3 A;  1VAO A;  3NVW B;  4MLA A;  3AN1 A;  5FXE A;  4UD8 A;  4XLO A;  3NRZ B;  2BVF A;  3SR6 B;  5G5H B;  3KJM A;  1W1L A;  4PVH A;  5HQX A;  2UUU A;  1WVE A;  3FW7 A;  3D2H A;  1FIQ B;  1ZR6 A;  1N60 C;  2VFS A;  2WDW A;  1UXY A;  3NVZ B;  1F0X A;  3FW8 A;  3GSY A;  4BC9 A;  1E8F A;  3TSJ A;  3NVV B;  5AE3 A;  3W8Z A;  1SB3 B;  2Y3S A;  4JB1 A;  2VFV A;  3ETR B;  2Q85 A;  1JRP A;  3S1F A; 
#chains in the Genus database with same CATH homology
 2R2Z A;  5D79 A;  3DED A;  1QLT A;  2P3H A;  3LAE A;  3VTE A;  2YVS A;  1MBB A;  2MBR A;  4PVE A;  2PLI A;  5AWV A;  4PVK A;  2P13 A;  4O95 A;  1W1R A;  2Q4W A;  3AMZ A;  1HSK A;  3RJA A;  2EXR A;  1N62 C;  2QPM A;  1WVF A;  3NVY B;  3PM9 A;  2Y08 A;  2BVG A;  1MBT A;  3DQ0 A;  4PVJ A;  3S1E A;  1E8H A;  1T3Q C;  1N63 C;  3EUB 3;  3FWA A;  1N5X A;  2GQU A;  3AM9 A;  4PWB A;  1AHU A;  1W1K A;  2VAO A;  4JAY A;  1FFV C;  3S1D A;  2O3G A;  2VFU A;  1ZXI C;  4PWC A;  1VDV A;  3BW7 A;  5AE1 A;  3RJ8 A;  5L6G A;  3I99 A;  2W3R A;  3POP A;  1RM6 B;  5ADZ A;  1E8G A;  3JS8 A;  2W3S A;  1DIQ A;  2OAI A;  1QLU A;  1FO4 A;  3LLB A;  5G5G B;  2VFT A;  1DII A;  1W1Q A;  1N61 C;  4PYT A;  1N5W C;  2IPI A;  2UUV A;  4OAL A;  1W1S A;  1FFU C;  2VFR A;  4ZOH B;  3B9J B;  3HRD C;  3D2J A;  3PQB A;  1E0Y A;  3W8W A;  1W1O A;  3S1C A;  5FXD A;  5HHZ A;  2W55 A;  5AE2 A;  4HG0 A;  2Y3R A;  1AHZ A;  2AXR A;  3D2D A;  1JRO A;  2PLS A;  1W1M A;  1V97 A;  5FXF A;  4BBY A;  5HMR A;  3W8X A;  4ML8 A;  2W54 A;  2R8D A;  2RK5 A;  1AHV A;  3C0P A;  2BVH A;  2Y4G A;  2I0K A;  5FXP A;  1W1J A;  3TSH A;  2NQW A;  3HSU A;  5I1V A;  1WYG A;  2GQT A;  3FW9 A;  4DNS A;  4BC7 A;  2P4P A;  5I1W A;  4BCA A;  5K8E A;  4PZF A;  5L6F A;  1DZN A;  2E3T A;  2QKN A;  1I19 A;  3NS1 B;  3TX1 A;  4EC3 A;  1VAO A;  3NVW B;  4MLA A;  3AN1 A;  5FXE A;  4UD8 A;  4XLO A;  3NRZ B;  2BVF A;  3SR6 B;  5G5H B;  3KJM A;  1W1L A;  4PVH A;  5HQX A;  2UUU A;  1WVE A;  3FW7 A;  3D2H A;  1FIQ B;  1ZR6 A;  1N60 C;  2VFS A;  2WDW A;  1UXY A;  3NVZ B;  1F0X A;  3FW8 A;  3GSY A;  4BC9 A;  1E8F A;  3TSJ A;  3NVV B;  5AE3 A;  3W8Z A;  1SB3 B;  2Y3S A;  4JB1 A;  2VFV A;  3ETR B;  2Q85 A;  1JRP A;  3S1F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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