4MLGA

Structure of rs223-beta-xylosidase
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
323
structure length
323
Chain Sequence
MKEPRYLVPGDYMADPAAHVFNDKLYIYPSHDWESGIPENDNGDHFNMKDYHVFSMDDVEQGEVTDHGVVLRTEDIPWAGRQLWDSDVAFRNGKYYMYFPLKDQNDIFRIGVAISDRPEGPFIPQENPIKGSYSMDPCIWPDKDGEYYMYFGGLWGGQLQRYRNNKALECALLPEGDEPALCPKVVRLREDMLEFAEEPRDLMILDEKGKLLSAGDTKRRFFEASWMHYYNGKYYFSYSTGDTHLICYATGDNPYGPFTYRGVILTPVVGWTTHHSIVEFKGKWYLFHHDCVPSKGKTWLRSLKVAELKYNPDGSIQPIKGTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Beta-xylosidase
publication title Structure of RS223-Beta-xylosidase
rcsb
source organism Uncultured organism
total genus 83
structure length 323
sequence length 323
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 3.2.1.37: Xylan 1,4-beta-xylosidase.
pdb deposition date 2013-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4mlgA00
4AK5A 2YFSA 3AKHA 5FLWA 4UDJA 5FK8A 4N1IA 3OM2A 3VT1A 2EXIA 3NQHA 5GLKA 3U14A 2B4WA 3ZXJA 3WN0A 3WN1A 2QQVA 3AKFA 3WPVA 4UDIA 4PVAA 4UDKA 1OYGA 3C7EA 3VT0A 3WPYA 4NOVA 3PIJA 3K1UA 1YIFA 1YI7A 4N2ZA 2X8SA 4KC7A 5AYDA 5GLPA 3TAWA 3QEFA 3AKIA 3PIGA 5AYCA 4COTA 4D47A 5FKBA 5GLLA 3UGHA 1Y4WA 5B6TA 1ST8A 2AC1A 3R4YA 4AK6A 3BYJA 5FMCA 3WMZA 2YFRA 4FFHA 3VSZA 3R67A 2VDTA 3KF3A 3KF5A 3LIHA 3OM4A 4UDKE 3LFIA 3VT2A 3QZ4A 3R4ZA 5A7VA 3BYNA 3WASA 5B6SA 2EXJA 5C0PA 1W2TA 5GLQA 3KSTA 5FMBA 1Y9GA 4U6BA 2AEYA 4MLGA 4AK7A 3C7FA 3UGGA 2EXKA 3QEDA 5GLNA 2ADDA 3VSFA 3WAUA 1YRZA 3SC7X 1WL7A 4QQSA 5JOZA 3OM7A 5JOWA 3LV4A 3D60A 3BYLA 1GYDB 3LDRA 1W18A 2XQRA 4O8NA 3ZXLA 3P2NA 3VSSA 5A7VB 4O8OA 4O8PA 3C7OA 4PVIA 4N4BA 4ONZA 5FMDA 3LF7A 3U75A 3D5YA 3RWKX 3WN2A 3LDKA 5A8DA 4N2RA 1VKDA 2ADEA 5JOYA 3BYKA 3ZXKA 3AKGA 2OXBA 1UYPA 1Y7BA 4KC8A 5FK7A 1GYHA 3C7HA 3LIGA 3WPUA 2EXHA 2X8FA 3LEMA 5ANNA 5GLOA 4FFIA 2QQWA 3OM5A 3WATA 4KCAA 3WPZA 4EQVA 2X8TA 5JOXA 1Y9MA 5AYEA 3C2UA 4FFFA 2YFTA 3WMYA 4KMIA 3D61A 5A8CA 3OM6A 5AY9A 5FKCA 1UV4A 1PT2A 3UGFA 4FFGA 5FIXA 3D5ZA 3QC2A 1GYEB 3CU9A 4KCBA 5GLRA 3QEEA 4UDGA 5GLMA 3VSRA 4U6DA 2QQUA 3C7GA 2AEZA
chains in the Genus database with same CATH superfamily
4AK5A 2YFSA 3AKHA 5FLWA 4UDJA 5FK8A 4N1IA 1TL2A 3OM2A 3VT1A 2EXIA 3NQHA 5GLKA 3U14A 2B4WA 3ZXJA 3WN0A 3WN1A 2QQVA 3AKFA 3WPVA 4UDIA 4PVAA 4UDKA 1OYGA 3C7EA 3VT0A 3WPYA 4NOVA 3PIJA 3K1UA 1YIFA 1YI7A 4N2ZA 2X8SA 4KC7A 5AYDA 5GLPA 3TAWA 3QEFA 3AKIA 3PIGA 5AYCA 4COTA 4D47A 5FKBA 5GLLA 3UGHA 1Y4WA 5B6TA 1ST8A 2AC1A 3R4YA 4AK6A 3BYJA 5FMCA 3WMZA 2YFRA 4FFHA 3VSZA 3R67A 2VDTA 3KF3A 3KF5A 3LIHA 3OM4A 4UDKE 3LFIA 3VT2A 3QZ4A 3R4ZA 5A7VA 3BYNA 3WASA 5B6SA 2EXJA 5C0PA 1W2TA 5GLQA 3KSTA 5FMBA 1Y9GA 4U6BA 2AEYA 4MLGA 4AK7A 3C7FA 3UGGA 2EXKA 3QEDA 5GLNA 2ADDA 3VSFA 3WAUA 1YRZA 3SC7X 1WL7A 4QQSA 5JOZA 3OM7A 5JOWA 3LV4A 3D60A 3BYLA 1GYDB 3LDRA 1W18A 2XQRA 4O8NA 3ZXLA 5C2MA 3P2NA 3VSSA 5A7VB 4O8OA 4O8PA 3C7OA 4PVIA 4N4BA 4ONZA 5FMDA 3LF7A 3U75A 3D5YA 3RWKX 3WN2A 3LDKA 5A8DA 4N2RA 1VKDA 2ADEA 5JOYA 3BYKA 3ZXKA 3AKGA 2OXBA 1UYPA 1Y7BA 4KC8A 5FK7A 1GYHA 3C7HA 3LIGA 3WPUA 2EXHA 2X8FA 3LEMA 5ANNA 5GLOA 4FFIA 2QQWA 3OM5A 3WATA 4KCAA 3WPZA 4EQVA 2X8TA 5JOXA 1Y9MA 5AYEA 3C2UA 4FFFA 2YFTA 3WMYA 4KMIA 3D61A 5A8CA 3OM6A 5AY9A 5FKCA 1UV4A 1PT2A 3UGFA 4FFGA 5FIXA 3D5ZA 3QC2A 1GYEB 3CU9A 4KCBA 5GLRA 3QEEA 4UDGA 5GLMA 3VSRA 4U6DA 2QQUA 3C7GA 2AEZA
chains in the Genus database with same CATH topology
4AK5A 2YFSA 3AKHA 5FLWA 4UDJA 5FK8A 4N1IA 3OM2A 3VT1A 2EXIA 3NQHA 5GLKA 3U14A 2B4WA 3ZXJA 3WN0A 3WN1A 2QQVA 3AKFA 3WPVA 4UDIA 4PVAA 4UDKA 1OYGA 3C7EA 3VT0A 3WPYA 4NOVA 3PIJA 3K1UA 1YIFA 1YI7A 4N2ZA 2X8SA 4KC7A 5AYDA 5GLPA 3TAWA 3QEFA 3AKIA 3PIGA 5AYCA 4COTA 4D47A 5FKBA 5GLLA 3UGHA 1Y4WA 5B6TA 1ST8A 2AC1A 3R4YA 4AK6A 3BYJA 5FMCA 3WMZA 2YFRA 4FFHA 3VSZA 3R67A 2VDTA 3KF3A 3KF5A 3LIHA 3OM4A 4UDKE 3LFIA 3VT2A 3QZ4A 3R4ZA 5A7VA 3BYNA 3WASA 5B6SA 2EXJA 5C0PA 1W2TA 5GLQA 3KSTA 5FMBA 1Y9GA 4U6BA 2AEYA 4MLGA 4AK7A 3C7FA 3UGGA 2EXKA 3QEDA 5GLNA 2ADDA 3VSFA 3WAUA 1YRZA 3SC7X 1WL7A 4QQSA 5JOZA 3OM7A 5JOWA 3LV4A 3D60A 3BYLA 1GYDB 3LDRA 1W18A 2XQRA 4O8NA 3ZXLA 3P2NA 3VSSA 5A7VB 4O8OA 4O8PA 3C7OA 4PVIA 4N4BA 4ONZA 5FMDA 3LF7A 3U75A 3D5YA 3RWKX 3WN2A 3LDKA 5A8DA 4N2RA 1VKDA 2ADEA 5JOYA 3BYKA 3ZXKA 3AKGA 2OXBA 1UYPA 1Y7BA 4KC8A 5FK7A 1GYHA 3C7HA 3LIGA 3WPUA 2EXHA 2X8FA 3LEMA 5ANNA 5GLOA 4FFIA 2QQWA 3OM5A 3WATA 4KCAA 3WPZA 4EQVA 2X8TA 5JOXA 1Y9MA 5AYEA 3C2UA 4FFFA 2YFTA 3WMYA 4KMIA 3D61A 5A8CA 3OM6A 5AY9A 5FKCA 1UV4A 1PT2A 3UGFA 4FFGA 5FIXA 3D5ZA 3QC2A 1GYEB 3CU9A 4KCBA 5GLRA 3QEEA 4UDGA 5GLMA 3VSRA 4U6DA 2QQUA 3C7GA 2AEZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AK5 A;  2YFS A;  3AKH A;  5FLW A;  4UDJ A;  5FK8 A;  4N1I A;  3OM2 A;  3VT1 A;  2EXI A;  3NQH A;  5GLK A;  3U14 A;  2B4W A;  3ZXJ A;  3WN0 A;  3WN1 A;  2QQV A;  3AKF A;  3WPV A;  4UDI A;  4PVA A;  4UDK A;  1OYG A;  3C7E A;  3VT0 A;  3WPY A;  4NOV A;  3PIJ A;  3K1U A;  1YIF A;  1YI7 A;  4N2Z A;  2X8S A;  4KC7 A;  5AYD A;  5GLP A;  3TAW A;  3QEF A;  3AKI A;  3PIG A;  5AYC A;  4COT A;  4D47 A;  5FKB A;  5GLL A;  3UGH A;  1Y4W A;  5B6T A;  1ST8 A;  2AC1 A;  3R4Y A;  4AK6 A;  3BYJ A;  5FMC A;  3WMZ A;  2YFR A;  4FFH A;  3VSZ A;  3R67 A;  2VDT A;  3KF3 A;  3KF5 A;  3LIH A;  3OM4 A;  4UDK E;  3LFI A;  3VT2 A;  3QZ4 A;  3R4Z A;  5A7V A;  3BYN A;  3WAS A;  5B6S A;  2EXJ A;  5C0P A;  1W2T A;  5GLQ A;  3KST A;  5FMB A;  1Y9G A;  4U6B A;  2AEY A;  4MLG A;  4AK7 A;  3C7F A;  3UGG A;  2EXK A;  3QED A;  5GLN A;  2ADD A;  3VSF A;  3WAU A;  1YRZ A;  3SC7 X;  1WL7 A;  4QQS A;  5JOZ A;  3OM7 A;  5JOW A;  3LV4 A;  3D60 A;  3BYL A;  1GYD B;  3LDR A;  1W18 A;  2XQR A;  4O8N A;  3ZXL A;  3P2N A;  3VSS A;  5A7V B;  4O8O A;  4O8P A;  3C7O A;  4PVI A;  4N4B A;  4ONZ A;  5FMD A;  3LF7 A;  3U75 A;  3D5Y A;  3RWK X;  3WN2 A;  3LDK A;  5A8D A;  4N2R A;  1VKD A;  2ADE A;  5JOY A;  3BYK A;  3ZXK A;  3AKG A;  2OXB A;  1UYP A;  1Y7B A;  4KC8 A;  5FK7 A;  1GYH A;  3C7H A;  3LIG A;  3WPU A;  2EXH A;  2X8F A;  3LEM A;  5ANN A;  5GLO A;  4FFI A;  2QQW A;  3OM5 A;  3WAT A;  4KCA A;  3WPZ A;  4EQV A;  2X8T A;  5JOX A;  1Y9M A;  5AYE A;  3C2U A;  4FFF A;  2YFT A;  3WMY A;  4KMI A;  3D61 A;  5A8C A;  3OM6 A;  5AY9 A;  5FKC A;  1UV4 A;  1PT2 A;  3UGF A;  4FFG A;  5FIX A;  3D5Z A;  3QC2 A;  1GYE B;  3CU9 A;  4KCB A;  5GLR A;  3QEE A;  4UDG A;  5GLM A;  3VSR A;  4U6D A;  2QQU A;  3C7G A;  2AEZ A; 
#chains in the Genus database with same CATH topology
 4AK5 A;  2YFS A;  3AKH A;  5FLW A;  4UDJ A;  5FK8 A;  4N1I A;  1TL2 A;  3OM2 A;  3VT1 A;  2EXI A;  3NQH A;  5GLK A;  3U14 A;  2B4W A;  3ZXJ A;  3WN0 A;  3WN1 A;  2QQV A;  3AKF A;  3WPV A;  4UDI A;  4PVA A;  4UDK A;  1OYG A;  3C7E A;  3VT0 A;  3WPY A;  4NOV A;  3PIJ A;  3K1U A;  1YIF A;  1YI7 A;  4N2Z A;  2X8S A;  4KC7 A;  5AYD A;  5GLP A;  3TAW A;  3QEF A;  3AKI A;  3PIG A;  5AYC A;  4COT A;  4D47 A;  5FKB A;  5GLL A;  3UGH A;  1Y4W A;  5B6T A;  1ST8 A;  2AC1 A;  3R4Y A;  4AK6 A;  3BYJ A;  5FMC A;  3WMZ A;  2YFR A;  4FFH A;  3VSZ A;  3R67 A;  2VDT A;  3KF3 A;  3KF5 A;  3LIH A;  3OM4 A;  4UDK E;  3LFI A;  3VT2 A;  3QZ4 A;  3R4Z A;  5A7V A;  3BYN A;  3WAS A;  5B6S A;  2EXJ A;  5C0P A;  1W2T A;  5GLQ A;  3KST A;  5FMB A;  1Y9G A;  4U6B A;  2AEY A;  4MLG A;  4AK7 A;  3C7F A;  3UGG A;  2EXK A;  3QED A;  5GLN A;  2ADD A;  3VSF A;  3WAU A;  1YRZ A;  3SC7 X;  1WL7 A;  4QQS A;  5JOZ A;  3OM7 A;  5JOW A;  3LV4 A;  3D60 A;  3BYL A;  1GYD B;  3LDR A;  1W18 A;  2XQR A;  4O8N A;  3ZXL A;  5C2M A;  3P2N A;  3VSS A;  5A7V B;  4O8O A;  4O8P A;  3C7O A;  4PVI A;  4N4B A;  4ONZ A;  5FMD A;  3LF7 A;  3U75 A;  3D5Y A;  3RWK X;  3WN2 A;  3LDK A;  5A8D A;  4N2R A;  1VKD A;  2ADE A;  5JOY A;  3BYK A;  3ZXK A;  3AKG A;  2OXB A;  1UYP A;  1Y7B A;  4KC8 A;  5FK7 A;  1GYH A;  3C7H A;  3LIG A;  3WPU A;  2EXH A;  2X8F A;  3LEM A;  5ANN A;  5GLO A;  4FFI A;  2QQW A;  3OM5 A;  3WAT A;  4KCA A;  3WPZ A;  4EQV A;  2X8T A;  5JOX A;  1Y9M A;  5AYE A;  3C2U A;  4FFF A;  2YFT A;  3WMY A;  4KMI A;  3D61 A;  5A8C A;  3OM6 A;  5AY9 A;  5FKC A;  1UV4 A;  1PT2 A;  3UGF A;  4FFG A;  5FIX A;  3D5Z A;  3QC2 A;  1GYE B;  3CU9 A;  4KCB A;  5GLR A;  3QEE A;  4UDG A;  5GLM A;  3VSR A;  4U6D A;  2QQU A;  3C7G A;  2AEZ A; 
#chains in the Genus database with same CATH homology
 4AK5 A;  2YFS A;  3AKH A;  5FLW A;  4UDJ A;  5FK8 A;  4N1I A;  3OM2 A;  3VT1 A;  2EXI A;  3NQH A;  5GLK A;  3U14 A;  2B4W A;  3ZXJ A;  3WN0 A;  3WN1 A;  2QQV A;  3AKF A;  3WPV A;  4UDI A;  4PVA A;  4UDK A;  1OYG A;  3C7E A;  3VT0 A;  3WPY A;  4NOV A;  3PIJ A;  3K1U A;  1YIF A;  1YI7 A;  4N2Z A;  2X8S A;  4KC7 A;  5AYD A;  5GLP A;  3TAW A;  3QEF A;  3AKI A;  3PIG A;  5AYC A;  4COT A;  4D47 A;  5FKB A;  5GLL A;  3UGH A;  1Y4W A;  5B6T A;  1ST8 A;  2AC1 A;  3R4Y A;  4AK6 A;  3BYJ A;  5FMC A;  3WMZ A;  2YFR A;  4FFH A;  3VSZ A;  3R67 A;  2VDT A;  3KF3 A;  3KF5 A;  3LIH A;  3OM4 A;  4UDK E;  3LFI A;  3VT2 A;  3QZ4 A;  3R4Z A;  5A7V A;  3BYN A;  3WAS A;  5B6S A;  2EXJ A;  5C0P A;  1W2T A;  5GLQ A;  3KST A;  5FMB A;  1Y9G A;  4U6B A;  2AEY A;  4MLG A;  4AK7 A;  3C7F A;  3UGG A;  2EXK A;  3QED A;  5GLN A;  2ADD A;  3VSF A;  3WAU A;  1YRZ A;  3SC7 X;  1WL7 A;  4QQS A;  5JOZ A;  3OM7 A;  5JOW A;  3LV4 A;  3D60 A;  3BYL A;  1GYD B;  3LDR A;  1W18 A;  2XQR A;  4O8N A;  3ZXL A;  3P2N A;  3VSS A;  5A7V B;  4O8O A;  4O8P A;  3C7O A;  4PVI A;  4N4B A;  4ONZ A;  5FMD A;  3LF7 A;  3U75 A;  3D5Y A;  3RWK X;  3WN2 A;  3LDK A;  5A8D A;  4N2R A;  1VKD A;  2ADE A;  5JOY A;  3BYK A;  3ZXK A;  3AKG A;  2OXB A;  1UYP A;  1Y7B A;  4KC8 A;  5FK7 A;  1GYH A;  3C7H A;  3LIG A;  3WPU A;  2EXH A;  2X8F A;  3LEM A;  5ANN A;  5GLO A;  4FFI A;  2QQW A;  3OM5 A;  3WAT A;  4KCA A;  3WPZ A;  4EQV A;  2X8T A;  5JOX A;  1Y9M A;  5AYE A;  3C2U A;  4FFF A;  2YFT A;  3WMY A;  4KMI A;  3D61 A;  5A8C A;  3OM6 A;  5AY9 A;  5FKC A;  1UV4 A;  1PT2 A;  3UGF A;  4FFG A;  5FIX A;  3D5Z A;  3QC2 A;  1GYE B;  3CU9 A;  4KCB A;  5GLR A;  3QEE A;  4UDG A;  5GLM A;  3VSR A;  4U6D A;  2QQU A;  3C7G A;  2AEZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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