4MMGA

Crystal structure of yafq mutant h87q from e.coli
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
91
structure length
91
Chain Sequence
IQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTQAALFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords mRNA interferase YafQ
publication title Structural and Functional Characterization of Escherichia coli Toxin-Antitoxin Complex DinJ-YafQ
pubmed doi rcsb
source organism Escherichia coli
total genus 30
structure length 91
sequence length 91
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2013-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15738 YafQ_toxin Bacterial toxin of type II toxin-antitoxin system, YafQ
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 4mmgA00
4MMGA 2KHEA 4PX8A 4LSYA 4MCTB 3KXEA 3OEIC 4LS4A 3BPQB 5CZFC 4NRNA 5CZEB 5IXLA 2OTRA 4MMJA 4LTTA 4Q2UB 5CEGB 2A6SA 1Z8MA 1WMIA 3G5OB 2KC9A 2A6QE 4YY3Y 5CW7B 5IWHA 4FXHA 4MCXB 4FXIA 2A6RA 4FXED 4ML0B 2KC8A 4ML2A
chains in the Genus database with same CATH superfamily
4MMGA 2KHEA 4PX8A 3AO9A 4LSYA 4MCTB 2DJHA 3KXEA 3OEIC 4LS4A 3BPQB 5CZFC 4FBDA 3VJ7A 2A8KA 4NRNA 3HI2B 5CZEB 5IXLA 2OTRA 4MMJA 4LTTA 4Q2UB 5CEGB 2A6SA 1Z8MA 1WMIA 3G5OB 2KC9A 2A6QE 4YY3Y 5CW7B 5IWHA 2FHZB 1XQBA 2PD0A 2DFXE 4FXHA 4MCXB 4FXIA 2A6RA 4FXED 4ML0B 2KC8A 4ML2A
chains in the Genus database with same CATH topology
4MMGA 2KHEA 4PX8A 4LSYA 4MCTB 3KXEA 3OEIC 4LS4A 3BPQB 5CZFC 4NRNA 5CZEB 5IXLA 2OTRA 4MMJA 4LTTA 4Q2UB 5CEGB 2A6SA 1Z8MA 1WMIA 3G5OB 2KC9A 2A6QE 4YY3Y 5CW7B 5IWHA 4FXHA 4MCXB 4FXIA 2A6RA 4FXED 4ML0B 2KC8A 4ML2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MMG A;  2KHE A;  4PX8 A;  4LSY A;  4MCT B;  3KXE A;  3OEI C;  4LS4 A;  3BPQ B;  5CZF C;  4NRN A;  5CZE B;  5IXL A;  2OTR A;  4MMJ A;  4LTT A;  4Q2U B;  5CEG B;  2A6S A;  1Z8M A;  1WMI A;  3G5O B;  2KC9 A;  2A6Q E;  4YY3 Y;  5CW7 B;  5IWH A;  4FXH A;  4MCX B;  4FXI A;  2A6R A;  4FXE D;  4ML0 B;  2KC8 A;  4ML2 A; 
#chains in the Genus database with same CATH topology
 4MMG A;  2KHE A;  4PX8 A;  3AO9 A;  4LSY A;  4MCT B;  2DJH A;  3KXE A;  3OEI C;  4LS4 A;  3BPQ B;  5CZF C;  4FBD A;  3VJ7 A;  2A8K A;  4NRN A;  3HI2 B;  5CZE B;  5IXL A;  2OTR A;  4MMJ A;  4LTT A;  4Q2U B;  5CEG B;  2A6S A;  1Z8M A;  1WMI A;  3G5O B;  2KC9 A;  2A6Q E;  4YY3 Y;  5CW7 B;  5IWH A;  2FHZ B;  1XQB A;  2PD0 A;  2DFX E;  4FXH A;  4MCX B;  4FXI A;  2A6R A;  4FXE D;  4ML0 B;  2KC8 A;  4ML2 A; 
#chains in the Genus database with same CATH homology
 4MMG A;  2KHE A;  4PX8 A;  4LSY A;  4MCT B;  3KXE A;  3OEI C;  4LS4 A;  3BPQ B;  5CZF C;  4NRN A;  5CZE B;  5IXL A;  2OTR A;  4MMJ A;  4LTT A;  4Q2U B;  5CEG B;  2A6S A;  1Z8M A;  1WMI A;  3G5O B;  2KC9 A;  2A6Q E;  4YY3 Y;  5CW7 B;  5IWH A;  4FXH A;  4MCX B;  4FXI A;  2A6R A;  4FXE D;  4ML0 B;  2KC8 A;  4ML2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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