4MMJA

Crystal structure of yafq from e.coli strain bl21(de3)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
90
structure length
90
Chain Sequence
QRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQSSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTQAALFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Addiction module toxin, RelE/StbE family
publication title Structural and Functional Characterization of Escherichia coli Toxin-Antitoxin Complex DinJ-YafQ
pubmed doi rcsb
source organism Escherichia coli bl21(de3)
total genus 27
structure length 90
sequence length 90
ec nomenclature
pdb deposition date 2013-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15738 YafQ_toxin Bacterial toxin of type II toxin-antitoxin system, YafQ
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 4mmjA00
3BPQB 4MCXB 2KC8A 5IXLA 4ML0B 5CZFC 4NRNA 5CZEB 5CEGB 4PX8A 4FXHA 1Z8MA 4MCTB 4YY3Y 2A6QE 3KXEA 3OEIC 4LSYA 3G5OB 4MMJA 4LS4A 2A6SA 4FXIA 4LTTA 4Q2UB 4FXED 2OTRA 2KC9A 2A6RA 2KHEA 1WMIA 4ML2A 5IWHA 5CW7B 4MMGA
chains in the Genus database with same CATH superfamily
3BPQB 1XQBA 2PD0A 3HI2B 2FHZB 2DJHA 4MCXB 2KC8A 5IXLA 2DFXE 4ML0B 5CZFC 4NRNA 5CZEB 5CEGB 4PX8A 4FXHA 1Z8MA 4MCTB 4YY3Y 2A6QE 3KXEA 3OEIC 4LSYA 3G5OB 4MMJA 4LS4A 2A6SA 3VJ7A 4FXIA 4LTTA 4Q2UB 3AO9A 4FXED 4FBDA 2KC9A 2OTRA 2A6RA 2KHEA 1WMIA 4ML2A 5IWHA 2A8KA 5CW7B 4MMGA
chains in the Genus database with same CATH topology
3BPQB 4MCXB 2KC8A 5IXLA 4ML0B 5CZFC 4NRNA 5CZEB 5CEGB 4PX8A 4FXHA 1Z8MA 4MCTB 4YY3Y 2A6QE 3KXEA 3OEIC 4LSYA 3G5OB 4MMJA 4LS4A 2A6SA 4FXIA 4LTTA 4Q2UB 4FXED 2OTRA 2KC9A 2A6RA 2KHEA 1WMIA 4ML2A 5IWHA 5CW7B 4MMGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BPQ B;  4MCX B;  2KC8 A;  5IXL A;  4ML0 B;  5CZF C;  4NRN A;  5CZE B;  5CEG B;  4PX8 A;  4FXH A;  1Z8M A;  4MCT B;  4YY3 Y;  2A6Q E;  3KXE A;  3OEI C;  4LSY A;  3G5O B;  4MMJ A;  4LS4 A;  2A6S A;  4FXI A;  4LTT A;  4Q2U B;  4FXE D;  2OTR A;  2KC9 A;  2A6R A;  2KHE A;  1WMI A;  4ML2 A;  5IWH A;  5CW7 B;  4MMG A; 
#chains in the Genus database with same CATH topology
 3BPQ B;  1XQB A;  2PD0 A;  3HI2 B;  2FHZ B;  2DJH A;  4MCX B;  2KC8 A;  5IXL A;  2DFX E;  4ML0 B;  5CZF C;  4NRN A;  5CZE B;  5CEG B;  4PX8 A;  4FXH A;  1Z8M A;  4MCT B;  4YY3 Y;  2A6Q E;  3KXE A;  3OEI C;  4LSY A;  3G5O B;  4MMJ A;  4LS4 A;  2A6S A;  3VJ7 A;  4FXI A;  4LTT A;  4Q2U B;  3AO9 A;  4FXE D;  4FBD A;  2KC9 A;  2OTR A;  2A6R A;  2KHE A;  1WMI A;  4ML2 A;  5IWH A;  2A8K A;  5CW7 B;  4MMG A; 
#chains in the Genus database with same CATH homology
 3BPQ B;  4MCX B;  2KC8 A;  5IXL A;  4ML0 B;  5CZF C;  4NRN A;  5CZE B;  5CEG B;  4PX8 A;  4FXH A;  1Z8M A;  4MCT B;  4YY3 Y;  2A6Q E;  3KXE A;  3OEI C;  4LSY A;  3G5O B;  4MMJ A;  4LS4 A;  2A6S A;  4FXI A;  4LTT A;  4Q2U B;  4FXE D;  2OTR A;  2KC9 A;  2A6R A;  2KHE A;  1WMI A;  4ML2 A;  5IWH A;  5CW7 B;  4MMG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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