4MPHA

Crystal structure of baldcb / vany-like l,d-carboxypeptidase zinc(ii)-bound
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
189
structure length
181
Chain Sequence
ASSFASVQAVVNKEYGLPEDYKPEDLVVPNVPFSFSGTLEKSYLRKEAAEALERLFDLANKEGIQLNAVSGFRSYDYQKKLYANNVKRFSAKPGHSEHQTGLTMDVSSKSANNELELTFANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEYMNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords D-alanyl-D-alanine carboxypeptidase family protein
publication title Structure of the LdcB LD-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition.
pubmed doi rcsb
source organism Bacillus anthracis
total genus 57
structure length 181
sequence length 189
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02557 VanY D-alanyl-D-alanine carboxypeptidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.10 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Muramoyl-pentapeptide Carboxypeptidase; domain 2 4mphA00
5HNMA 3N1GA 2WFRA 4F78A 3N1MB 4OX3A 3N1RA 3D1MA 4C4MA 4NT9A 3N1PB 4MUSA 4JIDA 4OXDA 1TZPA 3K7JB 1LBUA 3N1FA 4MUQA 3N1QA 4MURA 1VHHA 2IBGE 3M1NA 3HO5H 2VO9A 4D0YA 4OX5A 4OAKA 2WG4A 3N1OA 2WFQA 2WFXA 3MXWA 3K7HB 1U10A 2WG3A 1R44A 4C4NA 3K7IB 4MUTA 3K7GB 4MPHA
chains in the Genus database with same CATH superfamily
5HNMA 3N1GA 2WFRA 4F78A 3N1MB 4OX3A 1WC8A 3N1RA 3D1MA 4C4MA 4NT9A 3N1PB 4MUSA 4JIDA 4OXDA 2J3RA 2J3TB 2J3WB 1TZPA 1LBUA 3K7JB 3N1FA 4MUQA 3CUED 3N1QA 4MURA 1VHHA 2IBGE 3KXCA 3M1NA 2C0JB 2VO9A 3HO5H 4D0YA 3NJCA 4OX5A 4OAKA 2BJNA 2WG4A 3N1OA 2J3TA 2WFQA 3KXCC 2WFXA 2J3WD 2OSDA 3MXWA 2CFHA 1U10A 2WG3A 2PWNA 3K7HB 1R44A 4C4NA 2J3RB 3K7IB 2C0JA 4MUTA 2CFHC 2OSOA 3CUEB 3K7GB 1WC9A 4MPHA 1SZ7A
chains in the Genus database with same CATH topology
5HNMA 3N1GA 2WFRA 4F78A 3N1MB 4OX3A 3N1RA 3D1MA 4C4MA 4NT9A 3N1PB 4MUSA 4JIDA 4OXDA 1TZPA 3K7JB 1LBUA 3N1FA 4MUQA 3N1QA 4MURA 1VHHA 2IBGE 3M1NA 3HO5H 2VO9A 4D0YA 4OX5A 4OAKA 2WG4A 3N1OA 2WFQA 2WFXA 3MXWA 3K7HB 1U10A 2WG3A 1R44A 4C4NA 3K7IB 4MUTA 3K7GB 4MPHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HNM A;  3N1G A;  2WFR A;  4F78 A;  3N1M B;  4OX3 A;  3N1R A;  3D1M A;  4C4M A;  4NT9 A;  3N1P B;  4MUS A;  4JID A;  4OXD A;  1TZP A;  3K7J B;  1LBU A;  3N1F A;  4MUQ A;  3N1Q A;  4MUR A;  1VHH A;  2IBG E;  3M1N A;  3HO5 H;  2VO9 A;  4D0Y A;  4OX5 A;  4OAK A;  2WG4 A;  3N1O A;  2WFQ A;  2WFX A;  3MXW A;  3K7H B;  1U10 A;  2WG3 A;  1R44 A;  4C4N A;  3K7I B;  4MUT A;  3K7G B;  4MPH A; 
#chains in the Genus database with same CATH topology
 5HNM A;  3N1G A;  2WFR A;  4F78 A;  3N1M B;  4OX3 A;  1WC8 A;  3N1R A;  3D1M A;  4C4M A;  4NT9 A;  3N1P B;  4MUS A;  4JID A;  4OXD A;  2J3R A;  2J3T B;  2J3W B;  1TZP A;  1LBU A;  3K7J B;  3N1F A;  4MUQ A;  3CUE D;  3N1Q A;  4MUR A;  1VHH A;  2IBG E;  3KXC A;  3M1N A;  2C0J B;  2VO9 A;  3HO5 H;  4D0Y A;  3NJC A;  4OX5 A;  4OAK A;  2BJN A;  2WG4 A;  3N1O A;  2J3T A;  2WFQ A;  3KXC C;  2WFX A;  2J3W D;  2OSD A;  3MXW A;  2CFH A;  1U10 A;  2WG3 A;  2PWN A;  3K7H B;  1R44 A;  4C4N A;  2J3R B;  3K7I B;  2C0J A;  4MUT A;  2CFH C;  2OSO A;  3CUE B;  3K7G B;  1WC9 A;  4MPH A;  1SZ7 A; 
#chains in the Genus database with same CATH homology
 5HNM A;  3N1G A;  2WFR A;  4F78 A;  3N1M B;  4OX3 A;  3N1R A;  3D1M A;  4C4M A;  4NT9 A;  3N1P B;  4MUS A;  4JID A;  4OXD A;  1TZP A;  3K7J B;  1LBU A;  3N1F A;  4MUQ A;  3N1Q A;  4MUR A;  1VHH A;  2IBG E;  3M1N A;  3HO5 H;  2VO9 A;  4D0Y A;  4OX5 A;  4OAK A;  2WG4 A;  3N1O A;  2WFQ A;  2WFX A;  3MXW A;  3K7H B;  1U10 A;  2WG3 A;  1R44 A;  4C4N A;  3K7I B;  4MUT A;  3K7G B;  4MPH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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