4MQDA

Crystal structure of comj, inhibitor of the dna degrading activity of nuca, from bacillus subtilis
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
133
structure length
133
Chain Sequence
AMIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords DNA-entry nuclease inhibitor
publication title Crystal structure of ComJ, inhibitor of the DNA degrading activity of NucA, from Bacillus subtilis
rcsb
source organism Bacillus subtilis subsp. subtilis
total genus 25
structure length 133
sequence length 133
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11033 ComJ Competence protein J (ComJ)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.30 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4mqdA00
4MQDA
chains in the Genus database with same CATH superfamily
3QNJA 4PO2A 2V7YA 4HYBA 4JWCA 3DOBA 4JWDA 3DPQA 4ILGA 4JN4A 4WV5A 1BPRA 3C7NB 4FL9A 2QXLA 1DKZA 4EZXA 4R5GA 4MQDA 2OP6A 5E84A 4R5LA 3DPOA 3SBSA 3D2EA 1DKXA 1CKRA 4JWIA 4EZWA 3DQGA 3N8EA 4WV7A 2KHOA 3C7NA 3SBTB 1DKYA 4JWEA 4EZPA 4EZNA 4EZQA 4E81A 4R5IA 4EZRA 4EZVA 1DG4A 3DPPA 4HY9A 4R5JA 4EZOA 1Q5LA 4ILIA 4EZTA 4R5KA 4EZSA 4F00A 2BPRA 3ZEFA 4JNEA 4EZUA 4ILHB 3H0XA 4F01A 4EZZA 1U00A 4B9QA 3D2FA 4EZYA 7HSCA 4I43A 5TKYA 4JNFA 1YUWA
chains in the Genus database with same CATH topology
3QNJA 4PO2A 2V7YA 4HYBA 4JWCA 3DOBA 4JWDA 3DPQA 4ILGA 4JN4A 4WV5A 1BPRA 3C7NB 4FL9A 2QXLA 1DKZA 4EZXA 4R5GA 4MQDA 2OP6A 5E84A 4R5LA 3DPOA 3SBSA 3D2EA 1DKXA 1CKRA 4JWIA 4EZWA 3DQGA 3N8EA 4WV7A 2KHOA 3C7NA 3SBTB 1DKYA 4JWEA 4EZPA 4EZNA 4EZQA 4E81A 4R5IA 4EZRA 4EZVA 1DG4A 3DPPA 4HY9A 4R5JA 4EZOA 1Q5LA 4ILIA 4EZTA 4R5KA 4EZSA 4F00A 2BPRA 3ZEFA 4JNEA 4EZUA 4ILHB 3H0XA 4F01A 4EZZA 1U00A 4B9QA 3D2FA 4EZYA 7HSCA 4I43A 5TKYA 4JNFA 1YUWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MQD A; 
#chains in the Genus database with same CATH topology
 3QNJ A;  4PO2 A;  2V7Y A;  4HYB A;  4JWC A;  3DOB A;  4JWD A;  3DPQ A;  4ILG A;  4JN4 A;  4WV5 A;  1BPR A;  3C7N B;  4FL9 A;  2QXL A;  1DKZ A;  4EZX A;  4R5G A;  4MQD A;  2OP6 A;  5E84 A;  4R5L A;  3DPO A;  3SBS A;  3D2E A;  1DKX A;  1CKR A;  4JWI A;  4EZW A;  3DQG A;  3N8E A;  4WV7 A;  2KHO A;  3C7N A;  3SBT B;  1DKY A;  4JWE A;  4EZP A;  4EZN A;  4EZQ A;  4E81 A;  4R5I A;  4EZR A;  4EZV A;  1DG4 A;  3DPP A;  4HY9 A;  4R5J A;  4EZO A;  1Q5L A;  4ILI A;  4EZT A;  4R5K A;  4EZS A;  4F00 A;  2BPR A;  3ZEF A;  4JNE A;  4EZU A;  4ILH B;  3H0X A;  4F01 A;  4EZZ A;  1U00 A;  4B9Q A;  3D2F A;  4EZY A;  7HSC A;  4I43 A;  5TKY A;  4JNF A;  1YUW A; 
#chains in the Genus database with same CATH homology
 3QNJ A;  4PO2 A;  2V7Y A;  4HYB A;  4JWC A;  3DOB A;  4JWD A;  3DPQ A;  4ILG A;  4JN4 A;  4WV5 A;  1BPR A;  3C7N B;  4FL9 A;  2QXL A;  1DKZ A;  4EZX A;  4R5G A;  4MQD A;  2OP6 A;  5E84 A;  4R5L A;  3DPO A;  3SBS A;  3D2E A;  1DKX A;  1CKR A;  4JWI A;  4EZW A;  3DQG A;  3N8E A;  4WV7 A;  2KHO A;  3C7N A;  3SBT B;  1DKY A;  4JWE A;  4EZP A;  4EZN A;  4EZQ A;  4E81 A;  4R5I A;  4EZR A;  4EZV A;  1DG4 A;  3DPP A;  4HY9 A;  4R5J A;  4EZO A;  1Q5L A;  4ILI A;  4EZT A;  4R5K A;  4EZS A;  4F00 A;  2BPR A;  3ZEF A;  4JNE A;  4EZU A;  4ILH B;  3H0X A;  4F01 A;  4EZZ A;  1U00 A;  4B9Q A;  3D2F A;  4EZY A;  7HSC A;  4I43 A;  5TKY A;  4JNF A;  1YUW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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