4MQDA

Crystal structure of comj, inhibitor of the dna degrading activity of nuca, from bacillus subtilis
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
133
structure length
133
Chain Sequence
AMIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords DNA-entry nuclease inhibitor
publication title Crystal structure of ComJ, inhibitor of the DNA degrading activity of NucA, from Bacillus subtilis
rcsb
source organism Bacillus subtilis subsp. subtilis
total genus 25
structure length 133
sequence length 133
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11033 ComJ Competence protein J (ComJ)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.34.30 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4mqdA00
4MQDA
chains in the Genus database with same CATH superfamily
4HYBA 4F00A 3QNJA 4JN4A 4HY9A 5E84A 1DKZA 4R5KA 3DQGA 2QXLA 4JWEA 4EZZA 3SBTB 4EZRA 1Q5LA 5TKYA 4EZSA 1DG4A 4EZXA 4ILIA 3H0XA 4ILGA 4ILHB 4R5JA 4JWCA 4JWDA 4R5GA 4EZNA 1DKXA 3N8EA 4WV5A 3D2EA 4WV7A 3SBSA 4EZUA 4EZWA 4EZQA 1BPRA 3DPQA 4EZVA 4PO2A 1U00A 3C7NA 4EZTA 1DKYA 3DPPA 4R5IA 3ZEFA 4B9QA 2BPRA 3C7NB 4JNFA 4MQDA 3D2FA 1YUWA 4R5LA 4EZOA 4JNEA 2KHOA 4FL9A 1CKRA 2V7YA 2OP6A 4F01A 4I43A 3DPOA 7HSCA 3DOBA 4EZYA 4JWIA 4E81A 4EZPA
chains in the Genus database with same CATH topology
4HYBA 4F00A 3QNJA 4JN4A 4HY9A 5E84A 1DKZA 4R5KA 3DQGA 2QXLA 4JWEA 4EZZA 3SBTB 4EZRA 1Q5LA 5TKYA 4EZSA 1DG4A 4EZXA 4ILIA 3H0XA 4ILGA 4ILHB 4R5JA 4JWCA 4JWDA 4R5GA 4EZNA 1DKXA 3N8EA 4WV5A 3D2EA 4WV7A 3SBSA 4EZUA 4EZWA 4EZQA 1BPRA 3DPQA 4EZVA 4PO2A 1U00A 3C7NA 4EZTA 1DKYA 3DPPA 4R5IA 3ZEFA 4B9QA 2BPRA 3C7NB 4JNFA 4MQDA 3D2FA 1YUWA 4R5LA 4EZOA 4JNEA 2KHOA 4FL9A 1CKRA 2V7YA 2OP6A 4F01A 4I43A 3DPOA 7HSCA 3DOBA 4EZYA 4JWIA 4E81A 4EZPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MQD A; 
#chains in the Genus database with same CATH topology
 4HYB A;  4F00 A;  3QNJ A;  4JN4 A;  4HY9 A;  5E84 A;  1DKZ A;  4R5K A;  3DQG A;  2QXL A;  4JWE A;  4EZZ A;  3SBT B;  4EZR A;  1Q5L A;  5TKY A;  4EZS A;  1DG4 A;  4EZX A;  4ILI A;  3H0X A;  4ILG A;  4ILH B;  4R5J A;  4JWC A;  4JWD A;  4R5G A;  4EZN A;  1DKX A;  3N8E A;  4WV5 A;  3D2E A;  4WV7 A;  3SBS A;  4EZU A;  4EZW A;  4EZQ A;  1BPR A;  3DPQ A;  4EZV A;  4PO2 A;  1U00 A;  3C7N A;  4EZT A;  1DKY A;  3DPP A;  4R5I A;  3ZEF A;  4B9Q A;  2BPR A;  3C7N B;  4JNF A;  4MQD A;  3D2F A;  1YUW A;  4R5L A;  4EZO A;  4JNE A;  2KHO A;  4FL9 A;  1CKR A;  2V7Y A;  2OP6 A;  4F01 A;  4I43 A;  3DPO A;  7HSC A;  3DOB A;  4EZY A;  4JWI A;  4E81 A;  4EZP A; 
#chains in the Genus database with same CATH homology
 4HYB A;  4F00 A;  3QNJ A;  4JN4 A;  4HY9 A;  5E84 A;  1DKZ A;  4R5K A;  3DQG A;  2QXL A;  4JWE A;  4EZZ A;  3SBT B;  4EZR A;  1Q5L A;  5TKY A;  4EZS A;  1DG4 A;  4EZX A;  4ILI A;  3H0X A;  4ILG A;  4ILH B;  4R5J A;  4JWC A;  4JWD A;  4R5G A;  4EZN A;  1DKX A;  3N8E A;  4WV5 A;  3D2E A;  4WV7 A;  3SBS A;  4EZU A;  4EZW A;  4EZQ A;  1BPR A;  3DPQ A;  4EZV A;  4PO2 A;  1U00 A;  3C7N A;  4EZT A;  1DKY A;  3DPP A;  4R5I A;  3ZEF A;  4B9Q A;  2BPR A;  3C7N B;  4JNF A;  4MQD A;  3D2F A;  1YUW A;  4R5L A;  4EZO A;  4JNE A;  2KHO A;  4FL9 A;  1CKR A;  2V7Y A;  2OP6 A;  4F01 A;  4I43 A;  3DPO A;  7HSC A;  3DOB A;  4EZY A;  4JWI A;  4E81 A;  4EZP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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