4MR0A

Crystal structure of pfba, a surface adhesin of streptococcus pneumoniae
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
458
structure length
456
Chain Sequence
b'TALSVKDYGAVGDGIHDDRQAIQDAIDAAAQGLGGGNVYFPEGTYLVKEIVFLKSHTHLELNEKATILNGINIKNHPSIVFMTGLFTDDGAQVEWGPTEDISYSGGTIDMNGALNEEGTKAKNLPLINSSGAFAIGNSNNVTIKNVTFKDSYQGHAIQIAGSKNVLVDNSRFLGQALPKTMKDGQIISKESIQIEPLTRKGFPYALNDDGKKSENVTIQNSYFGKSDKSGELVTAIGTHYQTLSTQNPSNIKILNNHFDNMMYAGVRFTGFTDVLIKGNRFDKKVKGESVHYRESGAALVNAYSYKNTKDLLDLNKQVVIAENIFNIADPKTKAIRVAKDSAEYLGKVSDITVTKNVINNNSKETEQPNIELLRVSDNLVVSENSIFGGKEGIVIEDSKGKITVLNNQFYNLSGKYISFIKSNANGKEPVISDGNFNIVTENGLYKIVTNNLSDKN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Plasmin and fibronectin-binding protein A
publication title Crystal structure of PfbA, a surface adhesin of Streptococcus pneumoniae, provides hints into its interaction with fibronectin
pubmed doi rcsb
source organism Streptococcus pneumoniae
molecule tags Plasimin and fibronectin-binding protein
total genus 162
structure length 456
sequence length 458
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4mr0A00
2PYGA 2NTBA 1O8DA 2VBKA 1CZFA 2O0WA 4XOPA 2NSTA 2Z8GA 2X6YA 4HWVA 1BHEA 1O8MA 4XR6A 1KCCA 2UVFA 2NTQA 4XMYA 3SUCA 4OJLA 4XM3A 3T9GA 4XKWA 1O8GA 2NSPA 4I84A 3FY3A 4W8TA 4XN0A 3KRGA 3GQ8A 2PYHA 1BN8A 2VBEA 4XLHA 4PMHA 5C1CA 4XLAA 4NK6A 2O04A 4XLFA 3GQAA 4W8RA 4OJ6A 1JRGA 4XOTA 4Z05A 4OJPA 4XL9A 1OGOX 1PXZA 4XNFA 1KCDA 4Z06A 3B4NA 1O8HA 4OZYA 1XG2A 3B8YA 3LMWA 4XN3A 3VSTA 2ODLA 4OJ5A 4EW9A 3VSVA 4W8SA 2NT9A 2X6XA 1DBGA 4XONA 4W8QA 3VSUA 2NZMA 1OOCA 3ZSCA 4Z03A 3B90A 1OGMX 1H80A 2BSPA 3GRHA 1HG8A 2O1DA 2QXZA 1NHCA 1AIRA 4OZZA 4AVZA 4NK8A 1X0CA 4U4BA 1DBOA 3VMVA 1O8IA 1IDKA 3VMWA 4XLCA 2X6WA 5C1EA 1K5CA 1OFLA 4XORA 3GQ7A 1VBLA 4YZQA 2NTPA 1IA5A 1O8KA 2O0VA 2EWEA 2QX3A 2UVEA 1RU4A 1RWRA 2X85A 4URRA 1RMGA 1IDJA 2X3HA 5AMVA 1O88A 2INUA 1JTAA 4MR0A 3JURA 1O8JA 1GQ8A 1QJVA 2O17A 4XLEA 1O8EA 4YZ0A 2QY1A 2IQ7A 3WWGA 4YZAA 1WMRA 3EQOA 4XQFA 2VBMA 2VJJA 1EE6A 4YZXA 2NT6A 3ZPPA 3UW0A 1QCXA 3EQNA 4OJOA 1KTWA 3GQ9A 4XKVA 1IB4A 4C2LA 1O8LA 4YEJA 1O8FA 4U49A 2INVA 2VJIA 1PE9A 1PLUA 4YELA 1OFMA 2PECA 4MXNA
chains in the Genus database with same CATH superfamily
2PYGA 2NTBA 2QZAA 2B0RA 2PECA 1O8DA 2J8IA 1CZFA 2O0WA 2VBKA 4XOPA 5DNSA 2NSTA 2Z8GA 2XT4A 2X6YA 4HWVA 1BHEA 1O8MA 4XR6A 1KCCA 2UVFA 3NB2A 2NTQA 2IOUG 4XMYA 3PSZA 2XT2A 3BH7B 3SUCA 4OJLA 1QQ1A 4XM3A 2XTYA 3T9GA 4XKWA 1LM1A 1O8GA 1KQ5A 2NSPA 1TYUA 1OFEA 4I84A 3N90A 2BM7A 3FY3A 4W8TA 4YEIA 4XN0A 3KRGA 3GQ8A 2PYHA 1QRCA 1BN8A 1HF2A 2QYUA 2V5IA 2VBEA 1K4ZA 4XLHA 2XTXA 4PMHA 4YC5A 5C1CA 3P4GA 4NK6A 2VFNA 4XLAA 2O04A 4XLFA 3GQAA 4W8RA 1OFDA 5JMCB 1TYXA 4OJ6A 1JRGA 4XOTA 4Z05A 3AK5A 2VFMA 3NAWA 4OJPA 4XL9A 3LJYA 1OGOX 1PXZA 4XNFA 1KCDA 4Z06A 3JX8A 3B4NA 1O8HA 4OZYA 4V02C 1XG2A 4YCQA 3B8YA 4YDTA 3SQVA 3LMWA 4XN3A 3VSTA 2ODLA 2F3LA 4OJ5A 4EW9A 5JLVC 2BM4A 1TYVA 3VSVA 4W8SA 3RIQA 3PETA 2NT9A 2X6XA 2J8KA 1DBGA 4XONA 4W8QA 2W7ZA 3VSUA 2NZMA 1OOCA 3ZSCA 1EA0A 4Z03A 3B90A 4OM9A 1OGMX 1H80A 2BSPA 3GRHA 4JRAC 1HG8A 1K8FA 2O1DA 2QXZA 3SY2A 1NHCA 1AIRA 4OZZA 4AVZA 2BX6A 3TH0A 2XC1A 1TSPA 1X0CA 1CLWA 1LLZA 2VFOA 4NK8A 4U4BA 1DABA 1DBOA 3ML3A 3VMVA 1O8IA 2BM6A 1IDKA 2G0YA 3VMWA 4XLCA 2X6WA 5C1EA 1K5CA 3SYJA 3SZEA 1OFLA 4KH3A 4XORA 3GQ7A 1VBLA 4YZQA 2NTPA 1IA5A 1O8KA 2O6WA 3LYCA 4OPWA 2O0VA 1QRBA 2EWEA 1RU4A 1RWRA 2QX3A 2UVEA 2X85A 4URRA 4YFOA 1RMGA 1IDJA 1WXRA 2X3HA 5AMVA 1O88A 2INUA 1JTAA 4MR0A 3JURA 1O8JA 1GQ8A 1QJVA 1TYWA 4XLEA 1LLWA 1O8EA 4YZ0A 2QY1A 2IQ7A 3WWGA 2XTWA 1QA3A 4YZAA 1WMRA 3EQOA 4XQFA 2VBMA 2VJJA 1EE6A 3DU1X 4YZXA 2NT6A 3H09A 3UW0A 3ZPPA 1QCXA 3EQNA 4OJOA 1KTWA 3GQ9A 4XKVA 3PSSA 4C2LA 1O8LA 1IB4A 1EZGA 1QA1A 4YEJA 1O8FA 4U49A 2INVA 2VJIA 1PE9A 1PLUA 2YUHA 4YELA 1QA2A 2BM5A 2VFPA 1L1IA 3N6ZA 3BH6B 1OFMA 2O17A 2VFQA 4MXNA
chains in the Genus database with same CATH topology
2PYGA 2NTBA 1O8DA 2VBKA 1CZFA 2O0WA 4XOPA 2NSTA 2Z8GA 2X6YA 4HWVA 1BHEA 1O8MA 4XR6A 1KCCA 2UVFA 2NTQA 4XMYA 3SUCA 4OJLA 4XM3A 3T9GA 4XKWA 1O8GA 2NSPA 4I84A 3FY3A 4W8TA 4XN0A 3KRGA 3GQ8A 2PYHA 1BN8A 2VBEA 4XLHA 4PMHA 5C1CA 4XLAA 4NK6A 2O04A 4XLFA 3GQAA 4W8RA 4OJ6A 1JRGA 4XOTA 4Z05A 4OJPA 4XL9A 1OGOX 1PXZA 4XNFA 1KCDA 4Z06A 3B4NA 1O8HA 4OZYA 1XG2A 3B8YA 3LMWA 4XN3A 3VSTA 2ODLA 4OJ5A 4EW9A 3VSVA 4W8SA 2NT9A 2X6XA 1DBGA 4XONA 4W8QA 3VSUA 2NZMA 1OOCA 3ZSCA 4Z03A 3B90A 1OGMX 1H80A 2BSPA 3GRHA 1HG8A 2O1DA 2QXZA 1NHCA 1AIRA 4OZZA 4AVZA 4NK8A 1X0CA 4U4BA 1DBOA 3VMVA 1O8IA 1IDKA 3VMWA 4XLCA 2X6WA 5C1EA 1K5CA 1OFLA 4XORA 3GQ7A 1VBLA 4YZQA 2NTPA 1IA5A 1O8KA 2O0VA 2EWEA 2QX3A 2UVEA 1RU4A 1RWRA 2X85A 4URRA 1RMGA 1IDJA 2X3HA 5AMVA 1O88A 2INUA 1JTAA 4MR0A 3JURA 1O8JA 1GQ8A 1QJVA 2O17A 4XLEA 1O8EA 4YZ0A 2QY1A 2IQ7A 3WWGA 4YZAA 1WMRA 3EQOA 4XQFA 2VBMA 2VJJA 1EE6A 4YZXA 2NT6A 3ZPPA 3UW0A 1QCXA 3EQNA 4OJOA 1KTWA 3GQ9A 4XKVA 1IB4A 4C2LA 1O8LA 4YEJA 1O8FA 4U49A 2INVA 2VJIA 1PE9A 1PLUA 4YELA 1OFMA 2PECA 4MXNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PYG A;  2NTB A;  1O8D A;  2VBK A;  1CZF A;  2O0W A;  4XOP A;  2NST A;  2Z8G A;  2X6Y A;  4HWV A;  1BHE A;  1O8M A;  4XR6 A;  1KCC A;  2UVF A;  2NTQ A;  4XMY A;  3SUC A;  4OJL A;  4XM3 A;  3T9G A;  4XKW A;  1O8G A;  2NSP A;  4I84 A;  3FY3 A;  4W8T A;  4XN0 A;  3KRG A;  3GQ8 A;  2PYH A;  1BN8 A;  2VBE A;  4XLH A;  4PMH A;  5C1C A;  4XLA A;  4NK6 A;  2O04 A;  4XLF A;  3GQA A;  4W8R A;  4OJ6 A;  1JRG A;  4XOT A;  4Z05 A;  4OJP A;  4XL9 A;  1OGO X;  1PXZ A;  4XNF A;  1KCD A;  4Z06 A;  3B4N A;  1O8H A;  4OZY A;  1XG2 A;  3B8Y A;  3LMW A;  4XN3 A;  3VST A;  2ODL A;  4OJ5 A;  4EW9 A;  3VSV A;  4W8S A;  2NT9 A;  2X6X A;  1DBG A;  4XON A;  4W8Q A;  3VSU A;  2NZM A;  1OOC A;  3ZSC A;  4Z03 A;  3B90 A;  1OGM X;  1H80 A;  2BSP A;  3GRH A;  1HG8 A;  2O1D A;  2QXZ A;  1NHC A;  1AIR A;  4OZZ A;  4AVZ A;  4NK8 A;  1X0C A;  4U4B A;  1DBO A;  3VMV A;  1O8I A;  1IDK A;  3VMW A;  4XLC A;  2X6W A;  5C1E A;  1K5C A;  1OFL A;  4XOR A;  3GQ7 A;  1VBL A;  4YZQ A;  2NTP A;  1IA5 A;  1O8K A;  2O0V A;  2EWE A;  2QX3 A;  2UVE A;  1RU4 A;  1RWR A;  2X85 A;  4URR A;  1RMG A;  1IDJ A;  2X3H A;  5AMV A;  1O88 A;  2INU A;  1JTA A;  4MR0 A;  3JUR A;  1O8J A;  1GQ8 A;  1QJV A;  2O17 A;  4XLE A;  1O8E A;  4YZ0 A;  2QY1 A;  2IQ7 A;  3WWG A;  4YZA A;  1WMR A;  3EQO A;  4XQF A;  2VBM A;  2VJJ A;  1EE6 A;  4YZX A;  2NT6 A;  3ZPP A;  3UW0 A;  1QCX A;  3EQN A;  4OJO A;  1KTW A;  3GQ9 A;  4XKV A;  1IB4 A;  4C2L A;  1O8L A;  4YEJ A;  1O8F A;  4U49 A;  2INV A;  2VJI A;  1PE9 A;  1PLU A;  4YEL A;  1OFM A;  2PEC A;  4MXN A; 
#chains in the Genus database with same CATH topology
 2PYG A;  2NTB A;  2QZA A;  2B0R A;  2PEC A;  1O8D A;  2J8I A;  1CZF A;  2O0W A;  2VBK A;  4XOP A;  5DNS A;  2NST A;  2Z8G A;  2XT4 A;  2X6Y A;  4HWV A;  1BHE A;  1O8M A;  4XR6 A;  1KCC A;  2UVF A;  3NB2 A;  2NTQ A;  2IOU G;  4XMY A;  3PSZ A;  2XT2 A;  3BH7 B;  3SUC A;  4OJL A;  1QQ1 A;  4XM3 A;  2XTY A;  3T9G A;  4XKW A;  1LM1 A;  1O8G A;  1KQ5 A;  2NSP A;  1TYU A;  1OFE A;  4I84 A;  3N90 A;  2BM7 A;  3FY3 A;  4W8T A;  4YEI A;  4XN0 A;  3KRG A;  3GQ8 A;  2PYH A;  1QRC A;  1BN8 A;  1HF2 A;  2QYU A;  2V5I A;  2VBE A;  1K4Z A;  4XLH A;  2XTX A;  4PMH A;  4YC5 A;  5C1C A;  3P4G A;  4NK6 A;  2VFN A;  4XLA A;  2O04 A;  4XLF A;  3GQA A;  4W8R A;  1OFD A;  5JMC B;  1TYX A;  4OJ6 A;  1JRG A;  4XOT A;  4Z05 A;  3AK5 A;  2VFM A;  3NAW A;  4OJP A;  4XL9 A;  3LJY A;  1OGO X;  1PXZ A;  4XNF A;  1KCD A;  4Z06 A;  3JX8 A;  3B4N A;  1O8H A;  4OZY A;  4V02 C;  1XG2 A;  4YCQ A;  3B8Y A;  4YDT A;  3SQV A;  3LMW A;  4XN3 A;  3VST A;  2ODL A;  2F3L A;  4OJ5 A;  4EW9 A;  5JLV C;  2BM4 A;  1TYV A;  3VSV A;  4W8S A;  3RIQ A;  3PET A;  2NT9 A;  2X6X A;  2J8K A;  1DBG A;  4XON A;  4W8Q A;  2W7Z A;  3VSU A;  2NZM A;  1OOC A;  3ZSC A;  1EA0 A;  4Z03 A;  3B90 A;  4OM9 A;  1OGM X;  1H80 A;  2BSP A;  3GRH A;  4JRA C;  1HG8 A;  1K8F A;  2O1D A;  2QXZ A;  3SY2 A;  1NHC A;  1AIR A;  4OZZ A;  4AVZ A;  2BX6 A;  3TH0 A;  2XC1 A;  1TSP A;  1X0C A;  1CLW A;  1LLZ A;  2VFO A;  4NK8 A;  4U4B A;  1DAB A;  1DBO A;  3ML3 A;  3VMV A;  1O8I A;  2BM6 A;  1IDK A;  2G0Y A;  3VMW A;  4XLC A;  2X6W A;  5C1E A;  1K5C A;  3SYJ A;  3SZE A;  1OFL A;  4KH3 A;  4XOR A;  3GQ7 A;  1VBL A;  4YZQ A;  2NTP A;  1IA5 A;  1O8K A;  2O6W A;  3LYC A;  4OPW A;  2O0V A;  1QRB A;  2EWE A;  1RU4 A;  1RWR A;  2QX3 A;  2UVE A;  2X85 A;  4URR A;  4YFO A;  1RMG A;  1IDJ A;  1WXR A;  2X3H A;  5AMV A;  1O88 A;  2INU A;  1JTA A;  4MR0 A;  3JUR A;  1O8J A;  1GQ8 A;  1QJV A;  1TYW A;  4XLE A;  1LLW A;  1O8E A;  4YZ0 A;  2QY1 A;  2IQ7 A;  3WWG A;  2XTW A;  1QA3 A;  4YZA A;  1WMR A;  3EQO A;  4XQF A;  2VBM A;  2VJJ A;  1EE6 A;  3DU1 X;  4YZX A;  2NT6 A;  3H09 A;  3UW0 A;  3ZPP A;  1QCX A;  3EQN A;  4OJO A;  1KTW A;  3GQ9 A;  4XKV A;  3PSS A;  4C2L A;  1O8L A;  1IB4 A;  1EZG A;  1QA1 A;  4YEJ A;  1O8F A;  4U49 A;  2INV A;  2VJI A;  1PE9 A;  1PLU A;  2YUH A;  4YEL A;  1QA2 A;  2BM5 A;  2VFP A;  1L1I A;  3N6Z A;  3BH6 B;  1OFM A;  2O17 A;  2VFQ A;  4MXN A; 
#chains in the Genus database with same CATH homology
 2PYG A;  2NTB A;  1O8D A;  2VBK A;  1CZF A;  2O0W A;  4XOP A;  2NST A;  2Z8G A;  2X6Y A;  4HWV A;  1BHE A;  1O8M A;  4XR6 A;  1KCC A;  2UVF A;  2NTQ A;  4XMY A;  3SUC A;  4OJL A;  4XM3 A;  3T9G A;  4XKW A;  1O8G A;  2NSP A;  4I84 A;  3FY3 A;  4W8T A;  4XN0 A;  3KRG A;  3GQ8 A;  2PYH A;  1BN8 A;  2VBE A;  4XLH A;  4PMH A;  5C1C A;  4XLA A;  4NK6 A;  2O04 A;  4XLF A;  3GQA A;  4W8R A;  4OJ6 A;  1JRG A;  4XOT A;  4Z05 A;  4OJP A;  4XL9 A;  1OGO X;  1PXZ A;  4XNF A;  1KCD A;  4Z06 A;  3B4N A;  1O8H A;  4OZY A;  1XG2 A;  3B8Y A;  3LMW A;  4XN3 A;  3VST A;  2ODL A;  4OJ5 A;  4EW9 A;  3VSV A;  4W8S A;  2NT9 A;  2X6X A;  1DBG A;  4XON A;  4W8Q A;  3VSU A;  2NZM A;  1OOC A;  3ZSC A;  4Z03 A;  3B90 A;  1OGM X;  1H80 A;  2BSP A;  3GRH A;  1HG8 A;  2O1D A;  2QXZ A;  1NHC A;  1AIR A;  4OZZ A;  4AVZ A;  4NK8 A;  1X0C A;  4U4B A;  1DBO A;  3VMV A;  1O8I A;  1IDK A;  3VMW A;  4XLC A;  2X6W A;  5C1E A;  1K5C A;  1OFL A;  4XOR A;  3GQ7 A;  1VBL A;  4YZQ A;  2NTP A;  1IA5 A;  1O8K A;  2O0V A;  2EWE A;  2QX3 A;  2UVE A;  1RU4 A;  1RWR A;  2X85 A;  4URR A;  1RMG A;  1IDJ A;  2X3H A;  5AMV A;  1O88 A;  2INU A;  1JTA A;  4MR0 A;  3JUR A;  1O8J A;  1GQ8 A;  1QJV A;  2O17 A;  4XLE A;  1O8E A;  4YZ0 A;  2QY1 A;  2IQ7 A;  3WWG A;  4YZA A;  1WMR A;  3EQO A;  4XQF A;  2VBM A;  2VJJ A;  1EE6 A;  4YZX A;  2NT6 A;  3ZPP A;  3UW0 A;  1QCX A;  3EQN A;  4OJO A;  1KTW A;  3GQ9 A;  4XKV A;  1IB4 A;  4C2L A;  1O8L A;  4YEJ A;  1O8F A;  4U49 A;  2INV A;  2VJI A;  1PE9 A;  1PLU A;  4YEL A;  1OFM A;  2PEC A;  4MXN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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