4MR0A

Crystal structure of pfba, a surface adhesin of streptococcus pneumoniae
Total Genus 162
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
458
structure length
456
Chain Sequence
TALSVKDYGAVGDGIHDDRQAIQDAIDAAAQGLGGGNVYFPEGTYLVKEIVFLKSHTHLELNEKATILNGINIKNHPSIVFMTGLFTDDGAQVEWGPTEDISYSGGTIDMNGALNEEGTKAKNLPLINSSGAFAIGNSNNVTIKNVTFKDSYQGHAIQIAGSKNVLVDNSRFLGQALPKTMKDGQIISKESIQIEPLTRKGFPYALNDDGKKSENVTIQNSYFGKSDKSGELVTAIGTHYQTLSTQNPSNIKILNNHFDNMMYAGVRFTGFTDVLIKGNRFDKKVKGESVHYRESGAALVNAYSYKNTKDLLDLNKQVVIAENIFNIADPKTKAIRVAKDSAEYLGKVSDITVTKNVINNNSKETEQPNIELLRVSDNLVVSENSIFGGKEGIVIEDSKGKITVLNNQFYNLSGKYISFIKSNANGKEPVISDGNFNIVTENGLYKIVTNNLSDKN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Plasmin and fibronectin-binding protein A
publication title Crystal structure of PfbA, a surface adhesin of Streptococcus pneumoniae, provides hints into its interaction with fibronectin
pubmed doi rcsb
source organism Streptococcus pneumoniae
molecule tags Plasimin and fibronectin-binding protein
total genus 162
structure length 456
sequence length 458
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12708 Pectate_lyase_3 Pectate lyase superfamily protein
A PF13229 Beta_helix Right handed beta helix region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4mr0A00
4I84A 4XLCA 4NK8A 1O8MA 4XL9A 2NTBA 3GQ8A 2ODLA 4W8SA 4YZQA 2O0VA 1XG2A 4XN0A 3FY3A 1BHEA 5AMVA 4YEJA 2O1DA 2NT6A 1JRGA 3GQ7A 3GRHA 4XKWA 1O8KA 4YELA 2NSTA 2NTPA 1O88A 2VJIA 3GQAA 1OGOX 1K5CA 4OJ5A 4HWVA 1O8EA 4YZ0A 2EWEA 2X3HA 4XLFA 1OOCA 3B90A 4XN3A 4XNFA 1KCCA 1JTAA 1O8IA 4OZYA 1IA5A 1RU4A 4NK6A 1VBLA 2O0WA 3VMVA 1O8HA 4EW9A 4OJ6A 4XLHA 3JURA 4URRA 2X6XA 4U49A 4MXNA 3KRGA 1GQ8A 4XORA 4W8TA 1O8LA 4Z06A 1BN8A 2UVFA 4C2LA 4PMHA 2O17A 1O8JA 1OFLA 1RMGA 4OJLA 1RWRA 3B8YA 1NHCA 4XONA 1IDKA 1PXZA 4XQFA 1DBGA 1WMRA 4XLEA 4W8RA 3UW0A 2X85A 2X6WA 2VBMA 4YZAA 1KCDA 4XR6A 4XM3A 2NT9A 3LMWA 1DBOA 2UVEA 4XMYA 4XOPA 2QX3A 3VSVA 2NZMA 3EQNA 1PE9A 1PLUA 2PYGA 1O8DA 2VBEA 2Z8GA 1QJVA 4YZXA 1O8FA 3ZSCA 1H80A 3T9GA 2IQ7A 2NTQA 4OZZA 4W8QA 4Z05A 3ZPPA 1HG8A 1CZFA 1EE6A 2O04A 2INVA 3VMWA 3EQOA 1AIRA 2X6YA 4MR0A 5C1EA 4XKVA 2QXZA 2VJJA 3GQ9A 3WWGA 4XLAA 3VSUA 2NSPA 3SUCA 1QCXA 2QY1A 5C1CA 2VBKA 4OJOA 4AVZA 1OFMA 1KTWA 1OGMX 2PECA 4Z03A 3VSTA 4XOTA 1IDJA 2INUA 3B4NA 2PYHA 1IB4A 4OJPA 4U4BA 2BSPA 1O8GA 1X0CA
chains in the Genus database with same CATH superfamily
4I84A 4XLCA 4NK8A 1O8MA 3SZEA 1EA0A 3N90A 4XL9A 2QZAA 2NTBA 3GQ8A 3PSSA 2ODLA 4W8SA 1EZGA 4YZQA 2IOUG 2O0VA 4YEIA 2J8IA 1XG2A 4XN0A 2G0YA 3FY3A 1K4ZA 2VFOA 2XTXA 1BHEA 2XT4A 2VFQA 5AMVA 4YEJA 2O1DA 2NT6A 2YUHA 3NAWA 1JRGA 3GQ7A 2VFNA 3GRHA 4XKWA 1O8KA 1TYVA 2VFPA 4YELA 2NSTA 2VFMA 2NTPA 1O88A 2VJIA 3GQAA 4YCQA 5JMCB 1OGOX 1K5CA 4OJ5A 3DU1X 1O8EA 4HWVA 4YZ0A 5DNSA 1OFDA 2EWEA 3SYJA 2X3HA 4XLFA 1OOCA 3B90A 4XN3A 4XNFA 1KCCA 1JTAA 1O8IA 3SY2A 4OZYA 1QA2A 1TYWA 1IA5A 3TH0A 2BM7A 2W7ZA 1RU4A 4NK6A 1VBLA 2O0WA 3PSZA 1O8HA 4YC5A 3VMVA 4EW9A 5JLVC 2BM5A 2BM4A 2QYUA 4OPWA 1QRBA 2B0RA 1KQ5A 1K8FA 4OJ6A 4XLHA 3JURA 2F3LA 4URRA 2X6XA 4U49A 3LJYA 3KRGA 1GQ8A 4MXNA 4XORA 4OM9A 4W8TA 1OFEA 1O8LA 4Z06A 3H09A 1CLWA 1BN8A 3SQVA 2UVFA 3JX8A 1QA1A 4C2LA 1QQ1A 4PMHA 2O17A 1O8JA 1WXRA 1OFLA 1RMGA 2O6WA 4OJLA 1RWRA 4V02C 3B8YA 1NHCA 4XONA 1LLZA 1IDKA 1PXZA 4XQFA 1DABA 1DBGA 3ML3A 1WMRA 3NB2A 4XLEA 4W8RA 3UW0A 2X85A 2X6WA 2XTYA 2VBMA 3P4GA 4YZAA 4YFOA 1KCDA 4XR6A 4XM3A 2NT9A 3LMWA 1DBOA 2UVEA 4XMYA 3N6ZA 4XOPA 4JRAC 2QX3A 3VSVA 2XTWA 2NZMA 3EQNA 1PE9A 1PLUA 2PYGA 1O8DA 2VBEA 2Z8GA 1QJVA 4YZXA 1O8FA 3ZSCA 1H80A 3T9GA 2IQ7A 2NTQA 3RIQA 4OZZA 4W8QA 4Z05A 3ZPPA 1HG8A 1CZFA 2V5IA 2XC1A 1LLWA 3AK5A 3BH6B 1EE6A 1QRCA 2O04A 2INVA 3VMWA 3EQOA 1AIRA 2X6YA 4MR0A 5C1EA 2J8KA 1TYXA 4XKVA 2QXZA 2VJJA 3GQ9A 2XT2A 3WWGA 1QA3A 4XLAA 3VSUA 2NSPA 3SUCA 1QCXA 2QY1A 3PETA 2VBKA 5C1CA 4OJOA 4AVZA 1OFMA 1L1IA 3BH7B 1KTWA 1OGMX 2BX6A 2PECA 1TSPA 4YDTA 4Z03A 3VSTA 4XOTA 2BM6A 1IDJA 2INUA 3B4NA 2PYHA 1IB4A 1HF2A 4KH3A 1LM1A 1TYUA 3LYCA 4OJPA 4U4BA 2BSPA 1O8GA 1X0CA
chains in the Genus database with same CATH topology
4I84A 4XLCA 4NK8A 1O8MA 4XL9A 2NTBA 3GQ8A 2ODLA 4W8SA 4YZQA 2O0VA 1XG2A 4XN0A 3FY3A 1BHEA 5AMVA 4YEJA 2O1DA 2NT6A 1JRGA 3GQ7A 3GRHA 4XKWA 1O8KA 4YELA 2NSTA 2NTPA 1O88A 2VJIA 3GQAA 1OGOX 1K5CA 4OJ5A 4HWVA 1O8EA 4YZ0A 2EWEA 2X3HA 4XLFA 1OOCA 3B90A 4XN3A 4XNFA 1KCCA 1JTAA 1O8IA 4OZYA 1IA5A 1RU4A 4NK6A 1VBLA 2O0WA 3VMVA 1O8HA 4EW9A 4OJ6A 4XLHA 3JURA 4URRA 2X6XA 4U49A 4MXNA 3KRGA 1GQ8A 4XORA 4W8TA 1O8LA 4Z06A 1BN8A 2UVFA 4C2LA 4PMHA 2O17A 1O8JA 1OFLA 1RMGA 4OJLA 1RWRA 3B8YA 1NHCA 4XONA 1IDKA 1PXZA 4XQFA 1DBGA 1WMRA 4XLEA 4W8RA 3UW0A 2X85A 2X6WA 2VBMA 4YZAA 1KCDA 4XR6A 4XM3A 2NT9A 3LMWA 1DBOA 2UVEA 4XMYA 4XOPA 2QX3A 3VSVA 2NZMA 3EQNA 1PE9A 1PLUA 2PYGA 1O8DA 2VBEA 2Z8GA 1QJVA 4YZXA 1O8FA 3ZSCA 1H80A 3T9GA 2IQ7A 2NTQA 4OZZA 4W8QA 4Z05A 3ZPPA 1HG8A 1CZFA 1EE6A 2O04A 2INVA 3VMWA 3EQOA 1AIRA 2X6YA 4MR0A 5C1EA 4XKVA 2QXZA 2VJJA 3GQ9A 3WWGA 4XLAA 3VSUA 2NSPA 3SUCA 1QCXA 2QY1A 5C1CA 2VBKA 4OJOA 4AVZA 1OFMA 1KTWA 1OGMX 2PECA 4Z03A 3VSTA 4XOTA 1IDJA 2INUA 3B4NA 2PYHA 1IB4A 4OJPA 4U4BA 2BSPA 1O8GA 1X0CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I84 A;  4XLC A;  4NK8 A;  1O8M A;  4XL9 A;  2NTB A;  3GQ8 A;  2ODL A;  4W8S A;  4YZQ A;  2O0V A;  1XG2 A;  4XN0 A;  3FY3 A;  1BHE A;  5AMV A;  4YEJ A;  2O1D A;  2NT6 A;  1JRG A;  3GQ7 A;  3GRH A;  4XKW A;  1O8K A;  4YEL A;  2NST A;  2NTP A;  1O88 A;  2VJI A;  3GQA A;  1OGO X;  1K5C A;  4OJ5 A;  4HWV A;  1O8E A;  4YZ0 A;  2EWE A;  2X3H A;  4XLF A;  1OOC A;  3B90 A;  4XN3 A;  4XNF A;  1KCC A;  1JTA A;  1O8I A;  4OZY A;  1IA5 A;  1RU4 A;  4NK6 A;  1VBL A;  2O0W A;  3VMV A;  1O8H A;  4EW9 A;  4OJ6 A;  4XLH A;  3JUR A;  4URR A;  2X6X A;  4U49 A;  4MXN A;  3KRG A;  1GQ8 A;  4XOR A;  4W8T A;  1O8L A;  4Z06 A;  1BN8 A;  2UVF A;  4C2L A;  4PMH A;  2O17 A;  1O8J A;  1OFL A;  1RMG A;  4OJL A;  1RWR A;  3B8Y A;  1NHC A;  4XON A;  1IDK A;  1PXZ A;  4XQF A;  1DBG A;  1WMR A;  4XLE A;  4W8R A;  3UW0 A;  2X85 A;  2X6W A;  2VBM A;  4YZA A;  1KCD A;  4XR6 A;  4XM3 A;  2NT9 A;  3LMW A;  1DBO A;  2UVE A;  4XMY A;  4XOP A;  2QX3 A;  3VSV A;  2NZM A;  3EQN A;  1PE9 A;  1PLU A;  2PYG A;  1O8D A;  2VBE A;  2Z8G A;  1QJV A;  4YZX A;  1O8F A;  3ZSC A;  1H80 A;  3T9G A;  2IQ7 A;  2NTQ A;  4OZZ A;  4W8Q A;  4Z05 A;  3ZPP A;  1HG8 A;  1CZF A;  1EE6 A;  2O04 A;  2INV A;  3VMW A;  3EQO A;  1AIR A;  2X6Y A;  4MR0 A;  5C1E A;  4XKV A;  2QXZ A;  2VJJ A;  3GQ9 A;  3WWG A;  4XLA A;  3VSU A;  2NSP A;  3SUC A;  1QCX A;  2QY1 A;  5C1C A;  2VBK A;  4OJO A;  4AVZ A;  1OFM A;  1KTW A;  1OGM X;  2PEC A;  4Z03 A;  3VST A;  4XOT A;  1IDJ A;  2INU A;  3B4N A;  2PYH A;  1IB4 A;  4OJP A;  4U4B A;  2BSP A;  1O8G A;  1X0C A; 
#chains in the Genus database with same CATH topology
 4I84 A;  4XLC A;  4NK8 A;  1O8M A;  3SZE A;  1EA0 A;  3N90 A;  4XL9 A;  2QZA A;  2NTB A;  3GQ8 A;  3PSS A;  2ODL A;  4W8S A;  1EZG A;  4YZQ A;  2IOU G;  2O0V A;  4YEI A;  2J8I A;  1XG2 A;  4XN0 A;  2G0Y A;  3FY3 A;  1K4Z A;  2VFO A;  2XTX A;  1BHE A;  2XT4 A;  2VFQ A;  5AMV A;  4YEJ A;  2O1D A;  2NT6 A;  2YUH A;  3NAW A;  1JRG A;  3GQ7 A;  2VFN A;  3GRH A;  4XKW A;  1O8K A;  1TYV A;  2VFP A;  4YEL A;  2NST A;  2VFM A;  2NTP A;  1O88 A;  2VJI A;  3GQA A;  4YCQ A;  5JMC B;  1OGO X;  1K5C A;  4OJ5 A;  3DU1 X;  1O8E A;  4HWV A;  4YZ0 A;  5DNS A;  1OFD A;  2EWE A;  3SYJ A;  2X3H A;  4XLF A;  1OOC A;  3B90 A;  4XN3 A;  4XNF A;  1KCC A;  1JTA A;  1O8I A;  3SY2 A;  4OZY A;  1QA2 A;  1TYW A;  1IA5 A;  3TH0 A;  2BM7 A;  2W7Z A;  1RU4 A;  4NK6 A;  1VBL A;  2O0W A;  3PSZ A;  1O8H A;  4YC5 A;  3VMV A;  4EW9 A;  5JLV C;  2BM5 A;  2BM4 A;  2QYU A;  4OPW A;  1QRB A;  2B0R A;  1KQ5 A;  1K8F A;  4OJ6 A;  4XLH A;  3JUR A;  2F3L A;  4URR A;  2X6X A;  4U49 A;  3LJY A;  3KRG A;  1GQ8 A;  4MXN A;  4XOR A;  4OM9 A;  4W8T A;  1OFE A;  1O8L A;  4Z06 A;  3H09 A;  1CLW A;  1BN8 A;  3SQV A;  2UVF A;  3JX8 A;  1QA1 A;  4C2L A;  1QQ1 A;  4PMH A;  2O17 A;  1O8J A;  1WXR A;  1OFL A;  1RMG A;  2O6W A;  4OJL A;  1RWR A;  4V02 C;  3B8Y A;  1NHC A;  4XON A;  1LLZ A;  1IDK A;  1PXZ A;  4XQF A;  1DAB A;  1DBG A;  3ML3 A;  1WMR A;  3NB2 A;  4XLE A;  4W8R A;  3UW0 A;  2X85 A;  2X6W A;  2XTY A;  2VBM A;  3P4G A;  4YZA A;  4YFO A;  1KCD A;  4XR6 A;  4XM3 A;  2NT9 A;  3LMW A;  1DBO A;  2UVE A;  4XMY A;  3N6Z A;  4XOP A;  4JRA C;  2QX3 A;  3VSV A;  2XTW A;  2NZM A;  3EQN A;  1PE9 A;  1PLU A;  2PYG A;  1O8D A;  2VBE A;  2Z8G A;  1QJV A;  4YZX A;  1O8F A;  3ZSC A;  1H80 A;  3T9G A;  2IQ7 A;  2NTQ A;  3RIQ A;  4OZZ A;  4W8Q A;  4Z05 A;  3ZPP A;  1HG8 A;  1CZF A;  2V5I A;  2XC1 A;  1LLW A;  3AK5 A;  3BH6 B;  1EE6 A;  1QRC A;  2O04 A;  2INV A;  3VMW A;  3EQO A;  1AIR A;  2X6Y A;  4MR0 A;  5C1E A;  2J8K A;  1TYX A;  4XKV A;  2QXZ A;  2VJJ A;  3GQ9 A;  2XT2 A;  3WWG A;  1QA3 A;  4XLA A;  3VSU A;  2NSP A;  3SUC A;  1QCX A;  2QY1 A;  3PET A;  2VBK A;  5C1C A;  4OJO A;  4AVZ A;  1OFM A;  1L1I A;  3BH7 B;  1KTW A;  1OGM X;  2BX6 A;  2PEC A;  1TSP A;  4YDT A;  4Z03 A;  3VST A;  4XOT A;  2BM6 A;  1IDJ A;  2INU A;  3B4N A;  2PYH A;  1IB4 A;  1HF2 A;  4KH3 A;  1LM1 A;  1TYU A;  3LYC A;  4OJP A;  4U4B A;  2BSP A;  1O8G A;  1X0C A; 
#chains in the Genus database with same CATH homology
 4I84 A;  4XLC A;  4NK8 A;  1O8M A;  4XL9 A;  2NTB A;  3GQ8 A;  2ODL A;  4W8S A;  4YZQ A;  2O0V A;  1XG2 A;  4XN0 A;  3FY3 A;  1BHE A;  5AMV A;  4YEJ A;  2O1D A;  2NT6 A;  1JRG A;  3GQ7 A;  3GRH A;  4XKW A;  1O8K A;  4YEL A;  2NST A;  2NTP A;  1O88 A;  2VJI A;  3GQA A;  1OGO X;  1K5C A;  4OJ5 A;  4HWV A;  1O8E A;  4YZ0 A;  2EWE A;  2X3H A;  4XLF A;  1OOC A;  3B90 A;  4XN3 A;  4XNF A;  1KCC A;  1JTA A;  1O8I A;  4OZY A;  1IA5 A;  1RU4 A;  4NK6 A;  1VBL A;  2O0W A;  3VMV A;  1O8H A;  4EW9 A;  4OJ6 A;  4XLH A;  3JUR A;  4URR A;  2X6X A;  4U49 A;  4MXN A;  3KRG A;  1GQ8 A;  4XOR A;  4W8T A;  1O8L A;  4Z06 A;  1BN8 A;  2UVF A;  4C2L A;  4PMH A;  2O17 A;  1O8J A;  1OFL A;  1RMG A;  4OJL A;  1RWR A;  3B8Y A;  1NHC A;  4XON A;  1IDK A;  1PXZ A;  4XQF A;  1DBG A;  1WMR A;  4XLE A;  4W8R A;  3UW0 A;  2X85 A;  2X6W A;  2VBM A;  4YZA A;  1KCD A;  4XR6 A;  4XM3 A;  2NT9 A;  3LMW A;  1DBO A;  2UVE A;  4XMY A;  4XOP A;  2QX3 A;  3VSV A;  2NZM A;  3EQN A;  1PE9 A;  1PLU A;  2PYG A;  1O8D A;  2VBE A;  2Z8G A;  1QJV A;  4YZX A;  1O8F A;  3ZSC A;  1H80 A;  3T9G A;  2IQ7 A;  2NTQ A;  4OZZ A;  4W8Q A;  4Z05 A;  3ZPP A;  1HG8 A;  1CZF A;  1EE6 A;  2O04 A;  2INV A;  3VMW A;  3EQO A;  1AIR A;  2X6Y A;  4MR0 A;  5C1E A;  4XKV A;  2QXZ A;  2VJJ A;  3GQ9 A;  3WWG A;  4XLA A;  3VSU A;  2NSP A;  3SUC A;  1QCX A;  2QY1 A;  5C1C A;  2VBK A;  4OJO A;  4AVZ A;  1OFM A;  1KTW A;  1OGM X;  2PEC A;  4Z03 A;  3VST A;  4XOT A;  1IDJ A;  2INU A;  3B4N A;  2PYH A;  1IB4 A;  4OJP A;  4U4B A;  2BSP A;  1O8G A;  1X0C A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...