4MXWR

Structure of heterotrimeric lymphotoxin lta1b2 bound to lymphotoxin beta receptor ltbr and anti-lta fab
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
169
structure length
149
Chain Sequence
CRDQEKEYYEPQHRICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVEIAPCTSKRKTQCRCCCTHCELLSDCPPGTEAVGKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQGLVEAAPGTAQSDTTCK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cytokine/immune system
molecule keywords Tumor necrosis factor receptor superfamily member 3
publication title Dimerization of LT beta R by LT alpha 1 beta 2 is necessary and sufficient for signal transduction.
pubmed doi rcsb
source organism Homo sapiens
total genus 22
structure length 149
sequence length 169
chains with identical sequence S
ec nomenclature
pdb deposition date 2013-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 4mxwR02
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 4mxwR01
4J6GC 4E4DR 3U3VA 1FT4A 1JMAB 3BUKC 4MSVB 4KGQC 4FHQA 3IJ2X 1SG1X 5CIRE 2X10A 1ZA3R 1DU3A 3WVTA 4YN0A 1D0GR 2H9GR 2HEYR 5DMJA 3QBQB 4M4RA 3QO4A 4MXWR 3ALQR 4OD2S 3QD6R 1EXTA 4GIQR 1D4VA 3FL7A 2UWIA 4M4PA 3TJEF 4BK4A 1TNRR 5IHLA 3ME4A 1NCFA 3U3SA 4N90R 3U3TA 3ME2R 3U3PA 4BK5A 2HEVR 3MBWA 3X3FA 3THMF 4I9XC 3U3QA 2AW2B 3K51B 3URFZ 4RSUD 5BNQR 4KGGC 5L36B 3MHDD 3MI8D
chains in the Genus database with same CATH superfamily
4J6GC 2E4WA 4E4DR 3U3VA 1FT4A 1JMAB 3BUKC 4MSVB 4KGQC 4FHQA 3IJ2X 1SG1X 5CIRE 2X10A 1ZA3R 1DU3A 3WVTA 4YN0A 1D0GR 2H9GR 2HEYR 5DMJA 3QBQB 4M4RA 3QO4A 4MXWR 3ALQR 4OD2S 3QD6R 1EXTA 2E4XA 1D4VA 3FL7A 2UWIA 4GIQR 4M4PA 3TJEF 1TNRR 4BK4A 5IHLA 3ME4A 1NCFA 3U3SA 2E4UA 4N90R 3U3TA 3ME2R 3U3PA 4BK5A 2HEVR 2E4YA 3MBWA 3X3FA 3THMF 4I9XC 2E4VA 3U3QA 2AW2B 3K51B 3URFZ 4RSUD 5BNQR 4KGGC 5L36B 3MHDD 3MI8D 2QR6A
chains in the Genus database with same CATH topology
4J6GC 4E4DR 3U3VA 1FT4A 1JMAB 3BUKC 4MSVB 4KGQC 4FHQA 3IJ2X 1SG1X 5CIRE 2X10A 1ZA3R 1DU3A 3WVTA 4YN0A 1D0GR 2H9GR 2HEYR 5DMJA 3QBQB 4M4RA 3QO4A 4MXWR 3ALQR 4OD2S 3QD6R 1EXTA 4GIQR 1D4VA 3FL7A 2UWIA 4M4PA 3TJEF 4BK4A 1TNRR 5IHLA 3ME4A 1NCFA 3U3SA 4N90R 3U3TA 3ME2R 3U3PA 4BK5A 2HEVR 3MBWA 3X3FA 3THMF 4I9XC 3U3QA 2AW2B 3K51B 3URFZ 4RSUD 5BNQR 4KGGC 5L36B 3MHDD 3MI8D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J6G C;  4E4D R;  3U3V A;  1FT4 A;  1JMA B;  3BUK C;  4MSV B;  4KGQ C;  4FHQ A;  3IJ2 X;  1SG1 X;  5CIR E;  2X10 A;  1ZA3 R;  1DU3 A;  3WVT A;  4YN0 A;  1D0G R;  2H9G R;  2HEY R;  5DMJ A;  3QBQ B;  4M4R A;  3QO4 A;  4MXW R;  3ALQ R;  4OD2 S;  3QD6 R;  1EXT A;  4GIQ R;  1D4V A;  3FL7 A;  2UWI A;  4M4P A;  3TJE F;  4BK4 A;  1TNR R;  5IHL A;  3ME4 A;  1NCF A;  3U3S A;  4N90 R;  3U3T A;  3ME2 R;  3U3P A;  4BK5 A;  2HEV R;  3MBW A;  3X3F A;  3THM F;  4I9X C;  3U3Q A;  2AW2 B;  3K51 B;  3URF Z;  4RSU D;  5BNQ R;  4KGG C;  5L36 B;  3MHD D;  3MI8 D; 
#chains in the Genus database with same CATH topology
 4J6G C;  2E4W A;  4E4D R;  3U3V A;  1FT4 A;  1JMA B;  3BUK C;  4MSV B;  4KGQ C;  4FHQ A;  3IJ2 X;  1SG1 X;  5CIR E;  2X10 A;  1ZA3 R;  1DU3 A;  3WVT A;  4YN0 A;  1D0G R;  2H9G R;  2HEY R;  5DMJ A;  3QBQ B;  4M4R A;  3QO4 A;  4MXW R;  3ALQ R;  4OD2 S;  3QD6 R;  1EXT A;  2E4X A;  1D4V A;  3FL7 A;  2UWI A;  4GIQ R;  4M4P A;  3TJE F;  1TNR R;  4BK4 A;  5IHL A;  3ME4 A;  1NCF A;  3U3S A;  2E4U A;  4N90 R;  3U3T A;  3ME2 R;  3U3P A;  4BK5 A;  2HEV R;  2E4Y A;  3MBW A;  3X3F A;  3THM F;  4I9X C;  2E4V A;  3U3Q A;  2AW2 B;  3K51 B;  3URF Z;  4RSU D;  5BNQ R;  4KGG C;  5L36 B;  3MHD D;  3MI8 D;  2QR6 A; 
#chains in the Genus database with same CATH homology
 4J6G C;  4E4D R;  3U3V A;  1FT4 A;  1JMA B;  3BUK C;  4MSV B;  4KGQ C;  4FHQ A;  3IJ2 X;  1SG1 X;  5CIR E;  2X10 A;  1ZA3 R;  1DU3 A;  3WVT A;  4YN0 A;  1D0G R;  2H9G R;  2HEY R;  5DMJ A;  3QBQ B;  4M4R A;  3QO4 A;  4MXW R;  3ALQ R;  4OD2 S;  3QD6 R;  1EXT A;  4GIQ R;  1D4V A;  3FL7 A;  2UWI A;  4M4P A;  3TJE F;  4BK4 A;  1TNR R;  5IHL A;  3ME4 A;  1NCF A;  3U3S A;  4N90 R;  3U3T A;  3ME2 R;  3U3P A;  4BK5 A;  2HEV R;  3MBW A;  3X3F A;  3THM F;  4I9X C;  3U3Q A;  2AW2 B;  3K51 B;  3URF Z;  4RSU D;  5BNQ R;  4KGG C;  5L36 B;  3MHD D;  3MI8 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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