4N0IA

Crystal structure of s. cerevisiae mitochondrial gatfab in complex with glutamine
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
459
structure length
450
Chain Sequence
SLKESIERLSSFQSKYNIFTSINPSPYSTLTGCVASIKDNIVTKDFPTTCASHILENFKSPFDATVVKLLKQAGVHILGKTNLDEFGMGSGGVHSIRGPVINPLYPHEDKKIMGGSSSGAAASVACDLVDFALGTDTGGSVRLPACYGSVLGFKPSYGRLSRFGVIAYSQSLDTVGILSKKINVLRKVFHTLDKYDMKDPTSLSVELRELIEGNKKVRRPLKVGIVKEFSHESMPIGFHRLYLSLLEKLINLGLEIYPVSIPSVKNCLPIYYTLSPAEAASNLSRYDGIRYGYRDSELDIKDGILFAPTRSKFGTEVKNRIILGNYNLCSDAFKNNFIKAEKLRVNLIDEFDGIFRFPNVLTNSKGNPDGLDLLIVPTSSKLPGSIRDFEEEEAKSPANSYINDVFTVPMSLAGLPSLSMPLKEKTPIGLQVVGQYGDDSTVLDFVESIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial
publication title Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 173
structure length 450
sequence length 459
ec nomenclature ec 6.3.5.7: Glutaminyl-tRNA synthase (glutamine-hydrolyzing).
pdb deposition date 2013-10-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 4n0iA00
3QJ9A 3LJ6A 4YJ6A 3H0MA 4ISTA 1OCMA 2WJ1A 3K83A 2G5IA 3A1KA 1M22A 3PPMA 4HBPA 3QJ8A 4GYRA 2WJ2A 1OBLA 4N0HA 2G5HA 4N0IA 3A2PA 2GI3A 4GYSA 3AL0A 1O9NA 1OCLA 3K7FA 3A2QA 4YJIA 3OJ8A 5EWQA 5AC3A 3K84A 3A1IA 4DO3A 2WAPA 1O9PA 1O9OA 1OBIA 2DC0A 2F2AA 3QKVA 1O9QA 1OCHA 4WJ3A 3H0LA 4ISSA 3KFUE 1M21A 1MT5A 3IP4A 4J5PA 2DF4A 3PR0A 3QK5A 3LJ7A 1OCKA 2DQNA 2VYAA 4CP8A 1OBJA 3H0RA 1OBKA
chains in the Genus database with same CATH superfamily
3QJ9A 3LJ6A 4YJ6A 3H0MA 4ISTA 1OCMA 2WJ1A 3K83A 2G5IA 3A1KA 1M22A 3PPMA 4HBPA 3QJ8A 4GYRA 2WJ2A 1OBLA 4N0HA 2G5HA 4N0IA 3A2PA 2GI3A 4GYSA 3AL0A 1O9NA 1OCLA 3K7FA 3A2QA 4YJIA 3OJ8A 5EWQA 5AC3A 3K84A 3A1IA 4DO3A 2WAPA 1O9PA 1O9OA 1OBIA 2DC0A 2F2AA 3QKVA 1O9QA 1OCHA 4WJ3A 3H0LA 4ISSA 3KFUE 1M21A 1MT5A 3IP4A 4J5PA 2DF4A 3PR0A 3QK5A 3LJ7A 1OCKA 2DQNA 2VYAA 4CP8A 1OBJA 3H0RA 1OBKA
chains in the Genus database with same CATH topology
3QJ9A 3LJ6A 4YJ6A 3H0MA 4ISTA 1OCMA 2WJ1A 3K83A 2G5IA 3A1KA 1M22A 3PPMA 4HBPA 3QJ8A 4GYRA 2WJ2A 1OBLA 4N0HA 2G5HA 4N0IA 3A2PA 2GI3A 4GYSA 3AL0A 1O9NA 1OCLA 3K7FA 3A2QA 4YJIA 3OJ8A 5EWQA 5AC3A 3K84A 3A1IA 4DO3A 2WAPA 1O9PA 1O9OA 1OBIA 2DC0A 2F2AA 3QKVA 1O9QA 1OCHA 4WJ3A 3H0LA 4ISSA 3KFUE 1M21A 1MT5A 3IP4A 4J5PA 2DF4A 3PR0A 3QK5A 3LJ7A 1OCKA 2DQNA 2VYAA 4CP8A 1OBJA 3H0RA 1OBKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QJ9 A;  3LJ6 A;  4YJ6 A;  3H0M A;  4IST A;  1OCM A;  2WJ1 A;  3K83 A;  2G5I A;  3A1K A;  1M22 A;  3PPM A;  4HBP A;  3QJ8 A;  4GYR A;  2WJ2 A;  1OBL A;  4N0H A;  2G5H A;  4N0I A;  3A2P A;  2GI3 A;  4GYS A;  3AL0 A;  1O9N A;  1OCL A;  3K7F A;  3A2Q A;  4YJI A;  3OJ8 A;  5EWQ A;  5AC3 A;  3K84 A;  3A1I A;  4DO3 A;  2WAP A;  1O9P A;  1O9O A;  1OBI A;  2DC0 A;  2F2A A;  3QKV A;  1O9Q A;  1OCH A;  4WJ3 A;  3H0L A;  4ISS A;  3KFU E;  1M21 A;  1MT5 A;  3IP4 A;  4J5P A;  2DF4 A;  3PR0 A;  3QK5 A;  3LJ7 A;  1OCK A;  2DQN A;  2VYA A;  4CP8 A;  1OBJ A;  3H0R A;  1OBK A; 
#chains in the Genus database with same CATH topology
 3QJ9 A;  3LJ6 A;  4YJ6 A;  3H0M A;  4IST A;  1OCM A;  2WJ1 A;  3K83 A;  2G5I A;  3A1K A;  1M22 A;  3PPM A;  4HBP A;  3QJ8 A;  4GYR A;  2WJ2 A;  1OBL A;  4N0H A;  2G5H A;  4N0I A;  3A2P A;  2GI3 A;  4GYS A;  3AL0 A;  1O9N A;  1OCL A;  3K7F A;  3A2Q A;  4YJI A;  3OJ8 A;  5EWQ A;  5AC3 A;  3K84 A;  3A1I A;  4DO3 A;  2WAP A;  1O9P A;  1O9O A;  1OBI A;  2DC0 A;  2F2A A;  3QKV A;  1O9Q A;  1OCH A;  4WJ3 A;  3H0L A;  4ISS A;  3KFU E;  1M21 A;  1MT5 A;  3IP4 A;  4J5P A;  2DF4 A;  3PR0 A;  3QK5 A;  3LJ7 A;  1OCK A;  2DQN A;  2VYA A;  4CP8 A;  1OBJ A;  3H0R A;  1OBK A; 
#chains in the Genus database with same CATH homology
 3QJ9 A;  3LJ6 A;  4YJ6 A;  3H0M A;  4IST A;  1OCM A;  2WJ1 A;  3K83 A;  2G5I A;  3A1K A;  1M22 A;  3PPM A;  4HBP A;  3QJ8 A;  4GYR A;  2WJ2 A;  1OBL A;  4N0H A;  2G5H A;  4N0I A;  3A2P A;  2GI3 A;  4GYS A;  3AL0 A;  1O9N A;  1OCL A;  3K7F A;  3A2Q A;  4YJI A;  3OJ8 A;  5EWQ A;  5AC3 A;  3K84 A;  3A1I A;  4DO3 A;  2WAP A;  1O9P A;  1O9O A;  1OBI A;  2DC0 A;  2F2A A;  3QKV A;  1O9Q A;  1OCH A;  4WJ3 A;  3H0L A;  4ISS A;  3KFU E;  1M21 A;  1MT5 A;  3IP4 A;  4J5P A;  2DF4 A;  3PR0 A;  3QK5 A;  3LJ7 A;  1OCK A;  2DQN A;  2VYA A;  4CP8 A;  1OBJ A;  3H0R A;  1OBK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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