4N31A

Structure and activity of streptococcus pyogenes sipa: a signal peptidase homologue essential for pilus polymerisation
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
142
structure length
142
Chain Sequence
b'FQGAQYVFGVMIINTNDMSPALSAGDGVLYYRLTDRYHINDVVVYEVDNTLKVGRIAAQAGDEVSFTQEGGLLINGHPPEKEVPYLTYPHSSGPNFPYKVPTGTYFILNDYREERLDSRYYGALPINQIKGKISTLLRVRGI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SipA
molecule tags Cell adhesion
source organism Streptococcus pyogenes
publication title Structure and activity of Streptococcus pyogenes SipA: a signal peptidase-like protein essential for pilus polymerisation.
pubmed doi rcsb
total genus 26
structure length 142
sequence length 142
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10502 Peptidase_S26 Signal peptidase, peptidase S26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.109.10 Mainly Beta Ribbon Umud Fragment, subunit A Umud Fragment, subunit A 4n31A00
3JSOA 4N31A 3S04A 3JSPA 1AY9A 1JHHA 2FKDA 2HNFA 1KCAA 1JHFA 4ME8A 2FJRA 2HO0A 3K2ZA 3BDNA 1JHEA 1F39A 1B12A 1JHCA 4NV4A 1T7DA 4K8WA 1UMUA 3IIQA 1I4VA 1KN9A
chains in the Genus database with same CATH superfamily
3JSOA 4N31A 3S04A 3JSPA 1AY9A 1JHHA 2FKDA 2HNFA 1KCAA 1JHFA 4ME8A 2FJRA 2HO0A 3K2ZA 3BDNA 1JHEA 1F39A 1B12A 1JHCA 4NV4A 1T7DA 4K8WA 1UMUA 3IIQA 1I4VA 1KN9A
chains in the Genus database with same CATH topology
3JSOA 4N31A 3S04A 3JSPA 1AY9A 1JHHA 2FKDA 2HNFA 1KCAA 1JHFA 4ME8A 2FJRA 2HO0A 3K2ZA 3BDNA 1JHEA 1F39A 1B12A 1JHCA 4NV4A 1T7DA 4K8WA 1UMUA 3IIQA 1I4VA 1KN9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JSO A;  4N31 A;  3S04 A;  3JSP A;  1AY9 A;  1JHH A;  2FKD A;  2HNF A;  1KCA A;  1JHF A;  4ME8 A;  2FJR A;  2HO0 A;  3K2Z A;  3BDN A;  1JHE A;  1F39 A;  1B12 A;  1JHC A;  4NV4 A;  1T7D A;  4K8W A;  1UMU A;  3IIQ A;  1I4V A;  1KN9 A; 
#chains in the Genus database with same CATH topology
 3JSO A;  4N31 A;  3S04 A;  3JSP A;  1AY9 A;  1JHH A;  2FKD A;  2HNF A;  1KCA A;  1JHF A;  4ME8 A;  2FJR A;  2HO0 A;  3K2Z A;  3BDN A;  1JHE A;  1F39 A;  1B12 A;  1JHC A;  4NV4 A;  1T7D A;  4K8W A;  1UMU A;  3IIQ A;  1I4V A;  1KN9 A; 
#chains in the Genus database with same CATH homology
 3JSO A;  4N31 A;  3S04 A;  3JSP A;  1AY9 A;  1JHH A;  2FKD A;  2HNF A;  1KCA A;  1JHF A;  4ME8 A;  2FJR A;  2HO0 A;  3K2Z A;  3BDN A;  1JHE A;  1F39 A;  1B12 A;  1JHC A;  4NV4 A;  1T7D A;  4K8W A;  1UMU A;  3IIQ A;  1I4V A;  1KN9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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