4N67A

Crystal structure of the n-terminal fic domain of a putative cell filamentation protein (virb-translocated bep effector protein) with bound adp from bartonella quintana
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
214
structure length
214
Chain Sequence
HMEHNYFYKNSATLKNKHGIKNPRKLYERCAHETAREAVNFRLEPPPGKFDAAYLRTIHWCLFHKTFEWAGVTRDQPFTFEDGSTACMPAMRPKGYKVPFAVGSQIQRELKKLEQRLTAKNNLQGLSRQEFAANAAEVFTALDHAHPFRKGNGRTQRMFMEKLGQAAGYKIDFSLITKERMTYASIEAMQHNNPEPMKDLFEDITHPQKSLLLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the N-terminal Fic Domain of a Putative Cell Filamentation protein (VirB-translocated Bep effector protein) with bound ADP from Bartonella quintana
rcsb
source organism Bartonella quintana
molecule tags Transferase
molecule keywords Putative cell filamentation protein
total genus 83
structure length 214
sequence length 214
ec nomenclature
pdb deposition date 2013-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 4n67A00
2VZAA 4XI8A 5JJ7A 4U04A 5JFZA 3SE5A 2JK8A 4N67A 4U0SA 3N3UA 3ZCBA 4PY3A 4NPSA 2VY3A 4ITRA 4X2EA 2G03A 4LU4A 3SN9A 3LETA 3CUCA 5CKLA 2F6SA 4M16A 4X2CA 3SHGA 3ZC7A 3S6AA 4U0UA 5CGLA 5JFFA 4U0ZA 5CMTA 4U07A 3ZLMA 4WGJA 4X2DA 5EU0A 5JJ6A
chains in the Genus database with same CATH superfamily
2VZAA 4XI8A 5JJ7A 4U04A 5JFZA 2NUDA 3SE5A 2JK8A 4N67A 4U0SA 1NH1A 3N3UA 3ZCBA 4PY3A 4NPSA 2VY3A 2NUNA 4ITRA 4X2EA 2G03A 4LU4A 3SN9A 3LETA 3CUCA 5CKLA 2F6SA 4M16A 4X2CA 3SHGA 3ZC7A 3S6AA 4U0UA 5CGLA 5JFFA 4U0ZA 5CMTA 4U07A 3ZLMA 4WGJA 4X2DA 5EU0A 5JJ6A
chains in the Genus database with same CATH topology
2VZAA 4XI8A 5JJ7A 4U04A 5JFZA 3SE5A 2JK8A 4N67A 4U0SA 3N3UA 3ZCBA 4PY3A 4NPSA 2VY3A 4ITRA 4X2EA 2G03A 4LU4A 3SN9A 3LETA 3CUCA 5CKLA 2F6SA 4M16A 4X2CA 3SHGA 3ZC7A 3S6AA 4U0UA 5CGLA 5JFFA 4U0ZA 5CMTA 4U07A 3ZLMA 4WGJA 4X2DA 5EU0A 5JJ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VZA A;  4XI8 A;  5JJ7 A;  4U04 A;  5JFZ A;  3SE5 A;  2JK8 A;  4N67 A;  4U0S A;  3N3U A;  3ZCB A;  4PY3 A;  4NPS A;  2VY3 A;  4ITR A;  4X2E A;  2G03 A;  4LU4 A;  3SN9 A;  3LET A;  3CUC A;  5CKL A;  2F6S A;  4M16 A;  4X2C A;  3SHG A;  3ZC7 A;  3S6A A;  4U0U A;  5CGL A;  5JFF A;  4U0Z A;  5CMT A;  4U07 A;  3ZLM A;  4WGJ A;  4X2D A;  5EU0 A;  5JJ6 A; 
#chains in the Genus database with same CATH topology
 2VZA A;  4XI8 A;  5JJ7 A;  4U04 A;  5JFZ A;  2NUD A;  3SE5 A;  2JK8 A;  4N67 A;  4U0S A;  1NH1 A;  3N3U A;  3ZCB A;  4PY3 A;  4NPS A;  2VY3 A;  2NUN A;  4ITR A;  4X2E A;  2G03 A;  4LU4 A;  3SN9 A;  3LET A;  3CUC A;  5CKL A;  2F6S A;  4M16 A;  4X2C A;  3SHG A;  3ZC7 A;  3S6A A;  4U0U A;  5CGL A;  5JFF A;  4U0Z A;  5CMT A;  4U07 A;  3ZLM A;  4WGJ A;  4X2D A;  5EU0 A;  5JJ6 A; 
#chains in the Genus database with same CATH homology
 2VZA A;  4XI8 A;  5JJ7 A;  4U04 A;  5JFZ A;  3SE5 A;  2JK8 A;  4N67 A;  4U0S A;  3N3U A;  3ZCB A;  4PY3 A;  4NPS A;  2VY3 A;  4ITR A;  4X2E A;  2G03 A;  4LU4 A;  3SN9 A;  3LET A;  3CUC A;  5CKL A;  2F6S A;  4M16 A;  4X2C A;  3SHG A;  3ZC7 A;  3S6A A;  4U0U A;  5CGL A;  5JFF A;  4U0Z A;  5CMT A;  4U07 A;  3ZLM A;  4WGJ A;  4X2D A;  5EU0 A;  5JJ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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