4NBAD

Carbazole-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
molecule keywords Terminal oxygenase component of carbazole
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbaD00
2A06E 1BCCE 4HM2A 2I7FA 2YVJB 2E4QA 4HM6A 4HKVA 4P1CH 2IBZE 4PV1D 4AIVA 2NUKA 1NTKE 4P1BH 4OGQD 4NBED 4HM7A 2E4PA 3CXHE 1ZRTE 1BE3E 2YIUC 3H1IE 1NU1E 4NBDD 3DQYA 3L71E 2XSOA 3VMGD 3L70E 2QPZA 3C0DA 3BCCE 1EZVE 3GTEA 2FYUE 4NB8D 1SQVE 2YFLA 3L72E 4NBCD 1G8KB 1RIEA 1NYKA 3EN1A 1EG9A 1SQXE 2GBWA 1VCKA 4H13D 5CXMA 5HL4A 4NBBD 1PP9E 3H1KE 1O7PA 4QCKA 3L74E 1NDOA 2HMJA 2QJKC 1PPJE 5AEUA 1ULJA 1Q90C 1KB9E 1ULIA 2HMOA 5KLVE 3D89A 2NVFA 1NTME 1SJGA 5AEWA 2QJYC 1WQLA 2ZT9D 3L75E 3N0QA 2ZYLA 3CWBE 4HM3A 3H1HE 1O7HA 1VF5D 1VM9A 1O7GA 1SQBE 4HJLA 1L0NE 4HM1A 2DE7D 3VMHD 5BOKA 4QUQA 2NVEA 1RFSA 3GL0A 4NBHD 2HMLA 1FQTA 2E74D 1L0LE 3EQQA 3GTSA 4HM4A 5KLIC 4H0LD 1O7MA 3VCPA 1JM1A 1SQPE 3GCEA 3FOUA 2HMKA 4QDCA 2B24A 4NBAD 1O7NA 2JO6A 2QJPC 3GKEA 2NWFA 2NUMA 4AAYB 3H1LE 2NVGA 4QDDA 4U3FE 3TGUE 2HMMA 4H44D 2CKFA 4HM0A 4HM8A 2D2CD 2XSHA 4QDFA 2BMRA 2BMOA 2DE6D 1KYOE 1P84E 3VCAA 1UUWA 1UUVA 4NBFD 2FYNC 2YFJA 2XR8A 2GBXA 3GOBA 4NB9D 3AZCA 3GB4A 4PD4E 3VMID 2BMQA 4QUPA 4QURA 5KKZC 2HMNA 2YFIA 1SQQE 2E75D 3GZYA 2BCCE 4QDFB 2E76D 1O7WA 2DE5D 1NTZE 4NBGD 4EMJB 2XRXA 2B1XA 3GZXA 3GL2A 3H1JE 2Q3WA 1G8JB 3CX5E 3L73E 2JZAA 4HM5A
chains in the Genus database with same CATH superfamily
2A06E 1BCCE 4HM2A 2I7FA 2YVJB 2E4QA 4HM6A 4HKVA 4P1CH 2IBZE 4PV1D 4AIVA 2NUKA 1NTKE 4P1BH 4OGQD 4NBED 4HM7A 2E4PA 3CXHE 1ZRTE 1BE3E 2YIUC 3H1IE 1NU1E 4NBDD 3DQYA 3L71E 2XSOA 3VMGD 3L70E 2QPZA 3C0DA 3BCCE 1EZVE 3GTEA 2FYUE 4NB8D 1SQVE 2YFLA 3L72E 4NBCD 1G8KB 1RIEA 1NYKA 3EN1A 1EG9A 1SQXE 2GBWA 1VCKA 4H13D 5CXMA 5HL4A 4NBBD 1PP9E 3H1KE 1O7PA 4QCKA 3L74E 1NDOA 2HMJA 2QJKC 1PPJE 5AEUA 1ULJA 1Q90C 1KB9E 1ULIA 2HMOA 5KLVE 3D89A 2NVFA 1NTME 1SJGA 5AEWA 2QJYC 1WQLA 2ZT9D 3L75E 3N0QA 2ZYLA 3CWBE 4HM3A 3H1HE 1O7HA 1VF5D 1VM9A 1O7GA 1SQBE 4HJLA 1L0NE 4HM1A 2DE7D 3VMHD 5BOKA 4QUQA 2NVEA 1RFSA 3GL0A 4NBHD 2HMLA 1FQTA 2E74D 1L0LE 3EQQA 3GTSA 4HM4A 5KLIC 4H0LD 1O7MA 3VCPA 1JM1A 1SQPE 3GCEA 3FOUA 2HMKA 4QDCA 2B24A 4NBAD 1O7NA 2JO6A 2QJPC 3GKEA 2NWFA 2NUMA 4AAYB 3H1LE 2NVGA 4QDDA 4U3FE 3TGUE 2HMMA 4H44D 2CKFA 4HM0A 4HM8A 2D2CD 2XSHA 4QDFA 2BMRA 2BMOA 2DE6D 1KYOE 1P84E 3VCAA 1UUWA 1UUVA 4NBFD 2FYNC 2YFJA 2XR8A 2GBXA 3GOBA 4NB9D 3AZCA 3GB4A 4PD4E 3VMID 2BMQA 4QUPA 4QURA 5KKZC 2HMNA 2YFIA 1SQQE 2E75D 3GZYA 2BCCE 4QDFB 2E76D 1O7WA 2DE5D 1NTZE 4NBGD 4EMJB 2XRXA 2B1XA 3GZXA 3GL2A 3H1JE 2Q3WA 1G8JB 3CX5E 3L73E 2JZAA 4HM5A
chains in the Genus database with same CATH topology
2A06E 1BCCE 4HM2A 2I7FA 2YVJB 2E4QA 4HM6A 4HKVA 4P1CH 2IBZE 4PV1D 4AIVA 2NUKA 1NTKE 4P1BH 4OGQD 4NBED 4HM7A 2E4PA 3CXHE 1ZRTE 1BE3E 2YIUC 3H1IE 1NU1E 4NBDD 3DQYA 3L71E 2XSOA 3VMGD 3L70E 2QPZA 3C0DA 3BCCE 1EZVE 3GTEA 2FYUE 4NB8D 1SQVE 2YFLA 3L72E 4NBCD 1G8KB 1RIEA 1NYKA 3EN1A 1EG9A 1SQXE 2GBWA 1VCKA 4H13D 5CXMA 5HL4A 4NBBD 1PP9E 3H1KE 1O7PA 4QCKA 3L74E 1NDOA 2HMJA 2QJKC 1PPJE 5AEUA 1ULJA 1Q90C 1KB9E 1ULIA 2HMOA 5KLVE 3D89A 2NVFA 1NTME 1SJGA 5AEWA 2QJYC 1WQLA 2ZT9D 3L75E 3N0QA 2ZYLA 3CWBE 4HM3A 3H1HE 1O7HA 1VF5D 1VM9A 1O7GA 1SQBE 4HJLA 1L0NE 4HM1A 2DE7D 3VMHD 5BOKA 4QUQA 2NVEA 1RFSA 3GL0A 4NBHD 2HMLA 1FQTA 2E74D 1L0LE 3EQQA 3GTSA 4HM4A 5KLIC 4H0LD 1O7MA 3VCPA 1JM1A 1SQPE 3GCEA 3FOUA 2HMKA 4QDCA 2B24A 4NBAD 1O7NA 2JO6A 2QJPC 3GKEA 2NWFA 2NUMA 4AAYB 3H1LE 2NVGA 4QDDA 4U3FE 3TGUE 2HMMA 4H44D 2CKFA 4HM0A 4HM8A 2D2CD 2XSHA 4QDFA 2BMRA 2BMOA 2DE6D 1KYOE 1P84E 3VCAA 1UUWA 1UUVA 4NBFD 2FYNC 2YFJA 2XR8A 2GBXA 3GOBA 4NB9D 3AZCA 3GB4A 4PD4E 3VMID 2BMQA 4QUPA 4QURA 5KKZC 2HMNA 2YFIA 1SQQE 2E75D 3GZYA 2BCCE 4QDFB 2E76D 1O7WA 2DE5D 1NTZE 4NBGD 4EMJB 2XRXA 2B1XA 3GZXA 3GL2A 3H1JE 2Q3WA 1G8JB 3CX5E 3L73E 2JZAA 4HM5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A06 E;  1BCC E;  4HM2 A;  2I7F A;  2YVJ B;  2E4Q A;  4HM6 A;  4HKV A;  4P1C H;  2IBZ E;  4PV1 D;  4AIV A;  2NUK A;  1NTK E;  4P1B H;  4OGQ D;  4NBE D;  4HM7 A;  2E4P A;  3CXH E;  1ZRT E;  1BE3 E;  2YIU C;  3H1I E;  1NU1 E;  4NBD D;  3DQY A;  3L71 E;  2XSO A;  3VMG D;  3L70 E;  2QPZ A;  3C0D A;  3BCC E;  1EZV E;  3GTE A;  2FYU E;  4NB8 D;  1SQV E;  2YFL A;  3L72 E;  4NBC D;  1G8K B;  1RIE A;  1NYK A;  3EN1 A;  1EG9 A;  1SQX E;  2GBW A;  1VCK A;  4H13 D;  5CXM A;  5HL4 A;  4NBB D;  1PP9 E;  3H1K E;  1O7P A;  4QCK A;  3L74 E;  1NDO A;  2HMJ A;  2QJK C;  1PPJ E;  5AEU A;  1ULJ A;  1Q90 C;  1KB9 E;  1ULI A;  2HMO A;  5KLV E;  3D89 A;  2NVF A;  1NTM E;  1SJG A;  5AEW A;  2QJY C;  1WQL A;  2ZT9 D;  3L75 E;  3N0Q A;  2ZYL A;  3CWB E;  4HM3 A;  3H1H E;  1O7H A;  1VF5 D;  1VM9 A;  1O7G A;  1SQB E;  4HJL A;  1L0N E;  4HM1 A;  2DE7 D;  3VMH D;  5BOK A;  4QUQ A;  2NVE A;  1RFS A;  3GL0 A;  4NBH D;  2HML A;  1FQT A;  2E74 D;  1L0L E;  3EQQ A;  3GTS A;  4HM4 A;  5KLI C;  4H0L D;  1O7M A;  3VCP A;  1JM1 A;  1SQP E;  3GCE A;  3FOU A;  2HMK A;  4QDC A;  2B24 A;  4NBA D;  1O7N A;  2JO6 A;  2QJP C;  3GKE A;  2NWF A;  2NUM A;  4AAY B;  3H1L E;  2NVG A;  4QDD A;  4U3F E;  3TGU E;  2HMM A;  4H44 D;  2CKF A;  4HM0 A;  4HM8 A;  2D2C D;  2XSH A;  4QDF A;  2BMR A;  2BMO A;  2DE6 D;  1KYO E;  1P84 E;  3VCA A;  1UUW A;  1UUV A;  4NBF D;  2FYN C;  2YFJ A;  2XR8 A;  2GBX A;  3GOB A;  4NB9 D;  3AZC A;  3GB4 A;  4PD4 E;  3VMI D;  2BMQ A;  4QUP A;  4QUR A;  5KKZ C;  2HMN A;  2YFI A;  1SQQ E;  2E75 D;  3GZY A;  2BCC E;  4QDF B;  2E76 D;  1O7W A;  2DE5 D;  1NTZ E;  4NBG D;  4EMJ B;  2XRX A;  2B1X A;  3GZX A;  3GL2 A;  3H1J E;  2Q3W A;  1G8J B;  3CX5 E;  3L73 E;  2JZA A;  4HM5 A; 
#chains in the Genus database with same CATH topology
 2A06 E;  1BCC E;  4HM2 A;  2I7F A;  2YVJ B;  2E4Q A;  4HM6 A;  4HKV A;  4P1C H;  2IBZ E;  4PV1 D;  4AIV A;  2NUK A;  1NTK E;  4P1B H;  4OGQ D;  4NBE D;  4HM7 A;  2E4P A;  3CXH E;  1ZRT E;  1BE3 E;  2YIU C;  3H1I E;  1NU1 E;  4NBD D;  3DQY A;  3L71 E;  2XSO A;  3VMG D;  3L70 E;  2QPZ A;  3C0D A;  3BCC E;  1EZV E;  3GTE A;  2FYU E;  4NB8 D;  1SQV E;  2YFL A;  3L72 E;  4NBC D;  1G8K B;  1RIE A;  1NYK A;  3EN1 A;  1EG9 A;  1SQX E;  2GBW A;  1VCK A;  4H13 D;  5CXM A;  5HL4 A;  4NBB D;  1PP9 E;  3H1K E;  1O7P A;  4QCK A;  3L74 E;  1NDO A;  2HMJ A;  2QJK C;  1PPJ E;  5AEU A;  1ULJ A;  1Q90 C;  1KB9 E;  1ULI A;  2HMO A;  5KLV E;  3D89 A;  2NVF A;  1NTM E;  1SJG A;  5AEW A;  2QJY C;  1WQL A;  2ZT9 D;  3L75 E;  3N0Q A;  2ZYL A;  3CWB E;  4HM3 A;  3H1H E;  1O7H A;  1VF5 D;  1VM9 A;  1O7G A;  1SQB E;  4HJL A;  1L0N E;  4HM1 A;  2DE7 D;  3VMH D;  5BOK A;  4QUQ A;  2NVE A;  1RFS A;  3GL0 A;  4NBH D;  2HML A;  1FQT A;  2E74 D;  1L0L E;  3EQQ A;  3GTS A;  4HM4 A;  5KLI C;  4H0L D;  1O7M A;  3VCP A;  1JM1 A;  1SQP E;  3GCE A;  3FOU A;  2HMK A;  4QDC A;  2B24 A;  4NBA D;  1O7N A;  2JO6 A;  2QJP C;  3GKE A;  2NWF A;  2NUM A;  4AAY B;  3H1L E;  2NVG A;  4QDD A;  4U3F E;  3TGU E;  2HMM A;  4H44 D;  2CKF A;  4HM0 A;  4HM8 A;  2D2C D;  2XSH A;  4QDF A;  2BMR A;  2BMO A;  2DE6 D;  1KYO E;  1P84 E;  3VCA A;  1UUW A;  1UUV A;  4NBF D;  2FYN C;  2YFJ A;  2XR8 A;  2GBX A;  3GOB A;  4NB9 D;  3AZC A;  3GB4 A;  4PD4 E;  3VMI D;  2BMQ A;  4QUP A;  4QUR A;  5KKZ C;  2HMN A;  2YFI A;  1SQQ E;  2E75 D;  3GZY A;  2BCC E;  4QDF B;  2E76 D;  1O7W A;  2DE5 D;  1NTZ E;  4NBG D;  4EMJ B;  2XRX A;  2B1X A;  3GZX A;  3GL2 A;  3H1J E;  2Q3W A;  1G8J B;  3CX5 E;  3L73 E;  2JZA A;  4HM5 A; 
#chains in the Genus database with same CATH homology
 2A06 E;  1BCC E;  4HM2 A;  2I7F A;  2YVJ B;  2E4Q A;  4HM6 A;  4HKV A;  4P1C H;  2IBZ E;  4PV1 D;  4AIV A;  2NUK A;  1NTK E;  4P1B H;  4OGQ D;  4NBE D;  4HM7 A;  2E4P A;  3CXH E;  1ZRT E;  1BE3 E;  2YIU C;  3H1I E;  1NU1 E;  4NBD D;  3DQY A;  3L71 E;  2XSO A;  3VMG D;  3L70 E;  2QPZ A;  3C0D A;  3BCC E;  1EZV E;  3GTE A;  2FYU E;  4NB8 D;  1SQV E;  2YFL A;  3L72 E;  4NBC D;  1G8K B;  1RIE A;  1NYK A;  3EN1 A;  1EG9 A;  1SQX E;  2GBW A;  1VCK A;  4H13 D;  5CXM A;  5HL4 A;  4NBB D;  1PP9 E;  3H1K E;  1O7P A;  4QCK A;  3L74 E;  1NDO A;  2HMJ A;  2QJK C;  1PPJ E;  5AEU A;  1ULJ A;  1Q90 C;  1KB9 E;  1ULI A;  2HMO A;  5KLV E;  3D89 A;  2NVF A;  1NTM E;  1SJG A;  5AEW A;  2QJY C;  1WQL A;  2ZT9 D;  3L75 E;  3N0Q A;  2ZYL A;  3CWB E;  4HM3 A;  3H1H E;  1O7H A;  1VF5 D;  1VM9 A;  1O7G A;  1SQB E;  4HJL A;  1L0N E;  4HM1 A;  2DE7 D;  3VMH D;  5BOK A;  4QUQ A;  2NVE A;  1RFS A;  3GL0 A;  4NBH D;  2HML A;  1FQT A;  2E74 D;  1L0L E;  3EQQ A;  3GTS A;  4HM4 A;  5KLI C;  4H0L D;  1O7M A;  3VCP A;  1JM1 A;  1SQP E;  3GCE A;  3FOU A;  2HMK A;  4QDC A;  2B24 A;  4NBA D;  1O7N A;  2JO6 A;  2QJP C;  3GKE A;  2NWF A;  2NUM A;  4AAY B;  3H1L E;  2NVG A;  4QDD A;  4U3F E;  3TGU E;  2HMM A;  4H44 D;  2CKF A;  4HM0 A;  4HM8 A;  2D2C D;  2XSH A;  4QDF A;  2BMR A;  2BMO A;  2DE6 D;  1KYO E;  1P84 E;  3VCA A;  1UUW A;  1UUV A;  4NBF D;  2FYN C;  2YFJ A;  2XR8 A;  2GBX A;  3GOB A;  4NB9 D;  3AZC A;  3GB4 A;  4PD4 E;  3VMI D;  2BMQ A;  4QUP A;  4QUR A;  5KKZ C;  2HMN A;  2YFI A;  1SQQ E;  2E75 D;  3GZY A;  2BCC E;  4QDF B;  2E76 D;  1O7W A;  2DE5 D;  1NTZ E;  4NBG D;  4EMJ B;  2XRX A;  2B1X A;  3GZX A;  3GL2 A;  3H1J E;  2Q3W A;  1G8J B;  3CX5 E;  3L73 E;  2JZA A;  4HM5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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