4NBAD

Carbazole-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbaD00
3GCEA 1VM9A 2XSHA 2HMJA 4HM3A 4NBED 4QDFA 2JO6A 4QDFB 3H1JE 4NBAD 4U3FE 1JM1A 1KYOE 1NDOA 1WQLA 2GBXA 3FOUA 4H0LD 2E4QA 3VMID 4AAYB 1RFSA 4HJLA 2BMRA 2BMQA 2NWFA 1NYKA 1PP9E 4NBCD 3L72E 4PV1D 2E4PA 5BOKA 2NVEA 4NB8D 1NU1E 1PPJE 2HMLA 2HMOA 3H1LE 1G8KB 1NTME 2JZAA 1SJGA 4PD4E 3TGUE 1NTKE 2HMNA 1SQXE 3D89A 2BMOA 3CXHE 4QDCA 3VCPA 2YIUC 1EG9A 3GZXA 4HM6A 3L74E 1NTZE 1O7PA 2HMKA 3C0DA 1FQTA 3GL2A 3GTSA 1VCKA 1ZRTE 2HMMA 2QJYC 2YFIA 3BCCE 4OGQD 2QPZA 2GBWA 2FYNC 3CWBE 3CX5E 3EN1A 3H1KE 5HL4A 1UUWA 3GOBA 3L70E 4HKVA 5KLIC 3GZYA 3EQQA 4QCKA 5CXMA 3AZCA 1O7GA 1SQVE 1EZVE 3VMHD 3H1HE 3H1IE 3L71E 2D2CD 4NBGD 4EMJB 4QURA 2NUMA 4HM4A 4P1CH 4NBFD 2DE6D 2IBZE 1UUVA 2XRXA 2B1XA 2B24A 3DQYA 4AIVA 2A06E 3L75E 1KB9E 2FYUE 4NBBD 5AEUA 2DE5D 1O7HA 2E75D 2I7FA 4HM5A 1SQPE 1O7MA 3GTEA 2E74D 4P1BH 1BE3E 2XR8A 2CKFA 4QUQA 1L0NE 4QUPA 4NBDD 2YVJB 2XSOA 5KKZC 3GB4A 4HM1A 4HM8A 2NVFA 2DE7D 1ULIA 2NVGA 4NB9D 2Q3WA 2YFJA 5AEWA 1O7NA 2BCCE 1L0LE 5KLVE 1P84E 2YFLA 1Q90C 1VF5D 4HM7A 1O7WA 1RIEA 2QJPC 1BCCE 3GL0A 3L73E 4QDDA 3N0QA 1ULJA 4H44D 3VMGD 4HM2A 1SQQE 1G8JB 2NUKA 4H13D 1SQBE 4NBHD 2E76D 2ZYLA 2QJKC 4HM0A 2ZT9D 3GKEA 3VCAA
chains in the Genus database with same CATH superfamily
3GCEA 1VM9A 2XSHA 2HMJA 4HM3A 4NBED 4QDFA 2JO6A 4QDFB 3H1JE 4NBAD 4U3FE 1JM1A 1KYOE 1NDOA 1WQLA 2GBXA 3FOUA 4H0LD 2E4QA 3VMID 4AAYB 1RFSA 4HJLA 2BMRA 2BMQA 2NWFA 1NYKA 1PP9E 4NBCD 3L72E 4PV1D 2E4PA 5BOKA 2NVEA 4NB8D 1NU1E 1PPJE 2HMLA 2HMOA 3H1LE 1G8KB 1NTME 2JZAA 1SJGA 4PD4E 3TGUE 1NTKE 2HMNA 1SQXE 3D89A 2BMOA 3CXHE 4QDCA 3VCPA 2YIUC 1EG9A 3GZXA 4HM6A 3L74E 1NTZE 1O7PA 2HMKA 3C0DA 1FQTA 3GL2A 3GTSA 1VCKA 1ZRTE 2HMMA 2QJYC 2YFIA 3BCCE 4OGQD 2QPZA 2GBWA 2FYNC 3CWBE 3CX5E 3EN1A 3H1KE 5HL4A 1UUWA 3GOBA 3L70E 4HKVA 5KLIC 3GZYA 3EQQA 4QCKA 5CXMA 3AZCA 1O7GA 1SQVE 1EZVE 3VMHD 3H1HE 3H1IE 3L71E 2D2CD 4NBGD 4EMJB 4QURA 2NUMA 4HM4A 4P1CH 4NBFD 2DE6D 2IBZE 1UUVA 2XRXA 2B1XA 2B24A 3DQYA 4AIVA 2A06E 3L75E 1KB9E 2FYUE 4NBBD 5AEUA 2DE5D 1O7HA 2E75D 2I7FA 4HM5A 1SQPE 1O7MA 3GTEA 2E74D 4P1BH 1BE3E 2XR8A 2CKFA 4QUQA 1L0NE 4QUPA 4NBDD 2YVJB 2XSOA 5KKZC 3GB4A 4HM1A 4HM8A 2NVFA 2DE7D 1ULIA 2NVGA 4NB9D 2Q3WA 2YFJA 5AEWA 1O7NA 2BCCE 1L0LE 5KLVE 1P84E 2YFLA 1Q90C 1VF5D 4HM7A 1O7WA 1RIEA 2QJPC 1BCCE 3GL0A 3L73E 4QDDA 3N0QA 1ULJA 4H44D 3VMGD 4HM2A 1SQQE 1G8JB 2NUKA 4H13D 1SQBE 4NBHD 2E76D 2ZYLA 2QJKC 4HM0A 2ZT9D 3GKEA 3VCAA
chains in the Genus database with same CATH topology
3GCEA 1VM9A 2XSHA 2HMJA 4HM3A 4NBED 4QDFA 2JO6A 4QDFB 3H1JE 4NBAD 4U3FE 1JM1A 1KYOE 1NDOA 1WQLA 2GBXA 3FOUA 4H0LD 2E4QA 3VMID 4AAYB 1RFSA 4HJLA 2BMRA 2BMQA 2NWFA 1NYKA 1PP9E 4NBCD 3L72E 4PV1D 2E4PA 5BOKA 2NVEA 4NB8D 1NU1E 1PPJE 2HMLA 2HMOA 3H1LE 1G8KB 1NTME 2JZAA 1SJGA 4PD4E 3TGUE 1NTKE 2HMNA 1SQXE 3D89A 2BMOA 3CXHE 4QDCA 3VCPA 2YIUC 1EG9A 3GZXA 4HM6A 3L74E 1NTZE 1O7PA 2HMKA 3C0DA 1FQTA 3GL2A 3GTSA 1VCKA 1ZRTE 2HMMA 2QJYC 2YFIA 3BCCE 4OGQD 2QPZA 2GBWA 2FYNC 3CWBE 3CX5E 3EN1A 3H1KE 5HL4A 1UUWA 3GOBA 3L70E 4HKVA 5KLIC 3GZYA 3EQQA 4QCKA 5CXMA 3AZCA 1O7GA 1SQVE 1EZVE 3VMHD 3H1HE 3H1IE 3L71E 2D2CD 4NBGD 4EMJB 4QURA 2NUMA 4HM4A 4P1CH 4NBFD 2DE6D 2IBZE 1UUVA 2XRXA 2B1XA 2B24A 3DQYA 4AIVA 2A06E 3L75E 1KB9E 2FYUE 4NBBD 5AEUA 2DE5D 1O7HA 2E75D 2I7FA 4HM5A 1SQPE 1O7MA 3GTEA 2E74D 4P1BH 1BE3E 2XR8A 2CKFA 4QUQA 1L0NE 4QUPA 4NBDD 2YVJB 2XSOA 5KKZC 3GB4A 4HM1A 4HM8A 2NVFA 2DE7D 1ULIA 2NVGA 4NB9D 2Q3WA 2YFJA 5AEWA 1O7NA 2BCCE 1L0LE 5KLVE 1P84E 2YFLA 1Q90C 1VF5D 4HM7A 1O7WA 1RIEA 2QJPC 1BCCE 3GL0A 3L73E 4QDDA 3N0QA 1ULJA 4H44D 3VMGD 4HM2A 1SQQE 1G8JB 2NUKA 4H13D 1SQBE 4NBHD 2E76D 2ZYLA 2QJKC 4HM0A 2ZT9D 3GKEA 3VCAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GCE A;  1VM9 A;  2XSH A;  2HMJ A;  4HM3 A;  4NBE D;  4QDF A;  2JO6 A;  4QDF B;  3H1J E;  4NBA D;  4U3F E;  1JM1 A;  1KYO E;  1NDO A;  1WQL A;  2GBX A;  3FOU A;  4H0L D;  2E4Q A;  3VMI D;  4AAY B;  1RFS A;  4HJL A;  2BMR A;  2BMQ A;  2NWF A;  1NYK A;  1PP9 E;  4NBC D;  3L72 E;  4PV1 D;  2E4P A;  5BOK A;  2NVE A;  4NB8 D;  1NU1 E;  1PPJ E;  2HML A;  2HMO A;  3H1L E;  1G8K B;  1NTM E;  2JZA A;  1SJG A;  4PD4 E;  3TGU E;  1NTK E;  2HMN A;  1SQX E;  3D89 A;  2BMO A;  3CXH E;  4QDC A;  3VCP A;  2YIU C;  1EG9 A;  3GZX A;  4HM6 A;  3L74 E;  1NTZ E;  1O7P A;  2HMK A;  3C0D A;  1FQT A;  3GL2 A;  3GTS A;  1VCK A;  1ZRT E;  2HMM A;  2QJY C;  2YFI A;  3BCC E;  4OGQ D;  2QPZ A;  2GBW A;  2FYN C;  3CWB E;  3CX5 E;  3EN1 A;  3H1K E;  5HL4 A;  1UUW A;  3GOB A;  3L70 E;  4HKV A;  5KLI C;  3GZY A;  3EQQ A;  4QCK A;  5CXM A;  3AZC A;  1O7G A;  1SQV E;  1EZV E;  3VMH D;  3H1H E;  3H1I E;  3L71 E;  2D2C D;  4NBG D;  4EMJ B;  4QUR A;  2NUM A;  4HM4 A;  4P1C H;  4NBF D;  2DE6 D;  2IBZ E;  1UUV A;  2XRX A;  2B1X A;  2B24 A;  3DQY A;  4AIV A;  2A06 E;  3L75 E;  1KB9 E;  2FYU E;  4NBB D;  5AEU A;  2DE5 D;  1O7H A;  2E75 D;  2I7F A;  4HM5 A;  1SQP E;  1O7M A;  3GTE A;  2E74 D;  4P1B H;  1BE3 E;  2XR8 A;  2CKF A;  4QUQ A;  1L0N E;  4QUP A;  4NBD D;  2YVJ B;  2XSO A;  5KKZ C;  3GB4 A;  4HM1 A;  4HM8 A;  2NVF A;  2DE7 D;  1ULI A;  2NVG A;  4NB9 D;  2Q3W A;  2YFJ A;  5AEW A;  1O7N A;  2BCC E;  1L0L E;  5KLV E;  1P84 E;  2YFL A;  1Q90 C;  1VF5 D;  4HM7 A;  1O7W A;  1RIE A;  2QJP C;  1BCC E;  3GL0 A;  3L73 E;  4QDD A;  3N0Q A;  1ULJ A;  4H44 D;  3VMG D;  4HM2 A;  1SQQ E;  1G8J B;  2NUK A;  4H13 D;  1SQB E;  4NBH D;  2E76 D;  2ZYL A;  2QJK C;  4HM0 A;  2ZT9 D;  3GKE A;  3VCA A; 
#chains in the Genus database with same CATH topology
 3GCE A;  1VM9 A;  2XSH A;  2HMJ A;  4HM3 A;  4NBE D;  4QDF A;  2JO6 A;  4QDF B;  3H1J E;  4NBA D;  4U3F E;  1JM1 A;  1KYO E;  1NDO A;  1WQL A;  2GBX A;  3FOU A;  4H0L D;  2E4Q A;  3VMI D;  4AAY B;  1RFS A;  4HJL A;  2BMR A;  2BMQ A;  2NWF A;  1NYK A;  1PP9 E;  4NBC D;  3L72 E;  4PV1 D;  2E4P A;  5BOK A;  2NVE A;  4NB8 D;  1NU1 E;  1PPJ E;  2HML A;  2HMO A;  3H1L E;  1G8K B;  1NTM E;  2JZA A;  1SJG A;  4PD4 E;  3TGU E;  1NTK E;  2HMN A;  1SQX E;  3D89 A;  2BMO A;  3CXH E;  4QDC A;  3VCP A;  2YIU C;  1EG9 A;  3GZX A;  4HM6 A;  3L74 E;  1NTZ E;  1O7P A;  2HMK A;  3C0D A;  1FQT A;  3GL2 A;  3GTS A;  1VCK A;  1ZRT E;  2HMM A;  2QJY C;  2YFI A;  3BCC E;  4OGQ D;  2QPZ A;  2GBW A;  2FYN C;  3CWB E;  3CX5 E;  3EN1 A;  3H1K E;  5HL4 A;  1UUW A;  3GOB A;  3L70 E;  4HKV A;  5KLI C;  3GZY A;  3EQQ A;  4QCK A;  5CXM A;  3AZC A;  1O7G A;  1SQV E;  1EZV E;  3VMH D;  3H1H E;  3H1I E;  3L71 E;  2D2C D;  4NBG D;  4EMJ B;  4QUR A;  2NUM A;  4HM4 A;  4P1C H;  4NBF D;  2DE6 D;  2IBZ E;  1UUV A;  2XRX A;  2B1X A;  2B24 A;  3DQY A;  4AIV A;  2A06 E;  3L75 E;  1KB9 E;  2FYU E;  4NBB D;  5AEU A;  2DE5 D;  1O7H A;  2E75 D;  2I7F A;  4HM5 A;  1SQP E;  1O7M A;  3GTE A;  2E74 D;  4P1B H;  1BE3 E;  2XR8 A;  2CKF A;  4QUQ A;  1L0N E;  4QUP A;  4NBD D;  2YVJ B;  2XSO A;  5KKZ C;  3GB4 A;  4HM1 A;  4HM8 A;  2NVF A;  2DE7 D;  1ULI A;  2NVG A;  4NB9 D;  2Q3W A;  2YFJ A;  5AEW A;  1O7N A;  2BCC E;  1L0L E;  5KLV E;  1P84 E;  2YFL A;  1Q90 C;  1VF5 D;  4HM7 A;  1O7W A;  1RIE A;  2QJP C;  1BCC E;  3GL0 A;  3L73 E;  4QDD A;  3N0Q A;  1ULJ A;  4H44 D;  3VMG D;  4HM2 A;  1SQQ E;  1G8J B;  2NUK A;  4H13 D;  1SQB E;  4NBH D;  2E76 D;  2ZYL A;  2QJK C;  4HM0 A;  2ZT9 D;  3GKE A;  3VCA A; 
#chains in the Genus database with same CATH homology
 3GCE A;  1VM9 A;  2XSH A;  2HMJ A;  4HM3 A;  4NBE D;  4QDF A;  2JO6 A;  4QDF B;  3H1J E;  4NBA D;  4U3F E;  1JM1 A;  1KYO E;  1NDO A;  1WQL A;  2GBX A;  3FOU A;  4H0L D;  2E4Q A;  3VMI D;  4AAY B;  1RFS A;  4HJL A;  2BMR A;  2BMQ A;  2NWF A;  1NYK A;  1PP9 E;  4NBC D;  3L72 E;  4PV1 D;  2E4P A;  5BOK A;  2NVE A;  4NB8 D;  1NU1 E;  1PPJ E;  2HML A;  2HMO A;  3H1L E;  1G8K B;  1NTM E;  2JZA A;  1SJG A;  4PD4 E;  3TGU E;  1NTK E;  2HMN A;  1SQX E;  3D89 A;  2BMO A;  3CXH E;  4QDC A;  3VCP A;  2YIU C;  1EG9 A;  3GZX A;  4HM6 A;  3L74 E;  1NTZ E;  1O7P A;  2HMK A;  3C0D A;  1FQT A;  3GL2 A;  3GTS A;  1VCK A;  1ZRT E;  2HMM A;  2QJY C;  2YFI A;  3BCC E;  4OGQ D;  2QPZ A;  2GBW A;  2FYN C;  3CWB E;  3CX5 E;  3EN1 A;  3H1K E;  5HL4 A;  1UUW A;  3GOB A;  3L70 E;  4HKV A;  5KLI C;  3GZY A;  3EQQ A;  4QCK A;  5CXM A;  3AZC A;  1O7G A;  1SQV E;  1EZV E;  3VMH D;  3H1H E;  3H1I E;  3L71 E;  2D2C D;  4NBG D;  4EMJ B;  4QUR A;  2NUM A;  4HM4 A;  4P1C H;  4NBF D;  2DE6 D;  2IBZ E;  1UUV A;  2XRX A;  2B1X A;  2B24 A;  3DQY A;  4AIV A;  2A06 E;  3L75 E;  1KB9 E;  2FYU E;  4NBB D;  5AEU A;  2DE5 D;  1O7H A;  2E75 D;  2I7F A;  4HM5 A;  1SQP E;  1O7M A;  3GTE A;  2E74 D;  4P1B H;  1BE3 E;  2XR8 A;  2CKF A;  4QUQ A;  1L0N E;  4QUP A;  4NBD D;  2YVJ B;  2XSO A;  5KKZ C;  3GB4 A;  4HM1 A;  4HM8 A;  2NVF A;  2DE7 D;  1ULI A;  2NVG A;  4NB9 D;  2Q3W A;  2YFJ A;  5AEW A;  1O7N A;  2BCC E;  1L0L E;  5KLV E;  1P84 E;  2YFL A;  1Q90 C;  1VF5 D;  4HM7 A;  1O7W A;  1RIE A;  2QJP C;  1BCC E;  3GL0 A;  3L73 E;  4QDD A;  3N0Q A;  1ULJ A;  4H44 D;  3VMG D;  4HM2 A;  1SQQ E;  1G8J B;  2NUK A;  4H13 D;  1SQB E;  4NBH D;  2E76 D;  2ZYL A;  2QJK C;  4HM0 A;  2ZT9 D;  3GKE A;  3VCA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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