4NBAD

Carbazole-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbaD00
4HM4A 4HM8A 2HMJA 4HM1A 2YFJA 4QURA 4HM5A 3H1HE 3VMGD 5HL4A 4NBCD 3L74E 2E4PA 3L73E 3CXHE 4QDFA 4NBED 2GBWA 1O7WA 2Q3WA 2QJPC 2BMQA 1Q90C 3L71E 2XR8A 3BCCE 4P1BH 1NTZE 2NVGA 3GKEA 3VMHD 5KLVE 1SQXE 4NB8D 2DE5D 1NYKA 2JO6A 5AEWA 1KYOE 4NBHD 3VMID 4OGQD 2B24A 5KKZC 1VM9A 3H1JE 3L72E 1KB9E 4QDDA 2IBZE 1VF5D 2B1XA 2FYUE 2YVJB 1O7PA 1G8KB 1VCKA 1SQVE 4NB9D 2NVEA 4QDCA 1P84E 3EN1A 2DE6D 3GL2A 2YIUC 4NBDD 1BE3E 2E75D 4HM6A 4PV1D 2D2CD 3CX5E 4H0LD 3GZYA 4HM3A 1SQBE 1L0NE 5KLIC 4H13D 1NTKE 1EZVE 4QUQA 1NTME 1O7GA 3GZXA 4NBGD 3GL0A 2HMLA 2I7FA 2XRXA 4P1CH 3C0DA 2FYNC 3EQQA 3GCEA 4PD4E 2NUKA 3GTSA 2CKFA 3TGUE 5BOKA 1UUWA 4HM0A 3H1LE 2E74D 2GBXA 1G8JB 1UUVA 2A06E 4HM2A 1SJGA 2HMNA 2QJKC 4NBAD 1ZRTE 5AEUA 2NVFA 2BMOA 3N0QA 1WQLA 2HMMA 4AIVA 2YFLA 3GOBA 5CXMA 4NBFD 1O7NA 2QJYC 4HKVA 1SQQE 3L75E 4H44D 1JM1A 2QPZA 3D89A 2NWFA 1O7HA 3CWBE 3L70E 4EMJB 1L0LE 3H1KE 2HMOA 1NDOA 4AAYB 1NU1E 4HM7A 2ZYLA 4QDFB 3VCPA 3VCAA 2ZT9D 1BCCE 1O7MA 2BMRA 1PP9E 1SQPE 2NUMA 3FOUA 4HJLA 3AZCA 4QUPA 1EG9A 1RFSA 4NBBD 2E4QA 3H1IE 2YFIA 2XSHA 1ULIA 2XSOA 2E76D 3GTEA 1ULJA 1RIEA 3DQYA 2DE7D 4QCKA 2HMKA 2BCCE 3GB4A 2JZAA 4U3FE 1PPJE 1FQTA
chains in the Genus database with same CATH superfamily
4HM4A 4HM8A 2HMJA 4HM1A 2YFJA 4QURA 4HM5A 3H1HE 3VMGD 5HL4A 4NBCD 3L74E 2E4PA 3L73E 3CXHE 4QDFA 4NBED 2GBWA 1O7WA 2Q3WA 2QJPC 2BMQA 1Q90C 3L71E 2XR8A 3BCCE 4P1BH 1NTZE 2NVGA 3GKEA 3VMHD 5KLVE 1SQXE 4NB8D 2DE5D 1NYKA 2JO6A 5AEWA 1KYOE 4NBHD 3VMID 4OGQD 2B24A 5KKZC 1VM9A 3H1JE 3L72E 1KB9E 4QDDA 2IBZE 1VF5D 2B1XA 2FYUE 2YVJB 1O7PA 1G8KB 1VCKA 1SQVE 4NB9D 2NVEA 4QDCA 1P84E 3EN1A 2DE6D 3GL2A 2YIUC 4NBDD 1BE3E 2E75D 4HM6A 4PV1D 2D2CD 3CX5E 4H0LD 3GZYA 4HM3A 1SQBE 1L0NE 5KLIC 4H13D 1NTKE 1EZVE 4QUQA 1NTME 1O7GA 3GZXA 4NBGD 3GL0A 2HMLA 2I7FA 2XRXA 4P1CH 3C0DA 2FYNC 3EQQA 3GCEA 4PD4E 2NUKA 3GTSA 2CKFA 3TGUE 5BOKA 1UUWA 4HM0A 3H1LE 2E74D 2GBXA 1G8JB 1UUVA 2A06E 4HM2A 1SJGA 2HMNA 2QJKC 4NBAD 1ZRTE 5AEUA 2NVFA 2BMOA 3N0QA 1WQLA 2HMMA 4AIVA 2YFLA 3GOBA 5CXMA 4NBFD 1O7NA 2QJYC 4HKVA 1SQQE 3L75E 4H44D 1JM1A 2QPZA 3D89A 2NWFA 1O7HA 3CWBE 3L70E 4EMJB 1L0LE 3H1KE 2HMOA 1NDOA 4AAYB 1NU1E 4HM7A 2ZYLA 4QDFB 3VCPA 3VCAA 2ZT9D 1BCCE 1O7MA 2BMRA 1PP9E 1SQPE 2NUMA 3FOUA 4HJLA 3AZCA 4QUPA 1EG9A 1RFSA 4NBBD 2E4QA 3H1IE 2YFIA 2XSHA 1ULIA 2XSOA 2E76D 3GTEA 1ULJA 1RIEA 3DQYA 2DE7D 4QCKA 2HMKA 2BCCE 3GB4A 2JZAA 4U3FE 1PPJE 1FQTA
chains in the Genus database with same CATH topology
4HM4A 4HM8A 2HMJA 4HM1A 2YFJA 4QURA 4HM5A 3H1HE 3VMGD 5HL4A 4NBCD 3L74E 2E4PA 3L73E 3CXHE 4QDFA 4NBED 2GBWA 1O7WA 2Q3WA 2QJPC 2BMQA 1Q90C 3L71E 2XR8A 3BCCE 4P1BH 1NTZE 2NVGA 3GKEA 3VMHD 5KLVE 1SQXE 4NB8D 2DE5D 1NYKA 2JO6A 5AEWA 1KYOE 4NBHD 3VMID 4OGQD 2B24A 5KKZC 1VM9A 3H1JE 3L72E 1KB9E 4QDDA 2IBZE 1VF5D 2B1XA 2FYUE 2YVJB 1O7PA 1G8KB 1VCKA 1SQVE 4NB9D 2NVEA 4QDCA 1P84E 3EN1A 2DE6D 3GL2A 2YIUC 4NBDD 1BE3E 2E75D 4HM6A 4PV1D 2D2CD 3CX5E 4H0LD 3GZYA 4HM3A 1SQBE 1L0NE 5KLIC 4H13D 1NTKE 1EZVE 4QUQA 1NTME 1O7GA 3GZXA 4NBGD 3GL0A 2HMLA 2I7FA 2XRXA 4P1CH 3C0DA 2FYNC 3EQQA 3GCEA 4PD4E 2NUKA 3GTSA 2CKFA 3TGUE 5BOKA 1UUWA 4HM0A 3H1LE 2E74D 2GBXA 1G8JB 1UUVA 2A06E 4HM2A 1SJGA 2HMNA 2QJKC 4NBAD 1ZRTE 5AEUA 2NVFA 2BMOA 3N0QA 1WQLA 2HMMA 4AIVA 2YFLA 3GOBA 5CXMA 4NBFD 1O7NA 2QJYC 4HKVA 1SQQE 3L75E 4H44D 1JM1A 2QPZA 3D89A 2NWFA 1O7HA 3CWBE 3L70E 4EMJB 1L0LE 3H1KE 2HMOA 1NDOA 4AAYB 1NU1E 4HM7A 2ZYLA 4QDFB 3VCPA 3VCAA 2ZT9D 1BCCE 1O7MA 2BMRA 1PP9E 1SQPE 2NUMA 3FOUA 4HJLA 3AZCA 4QUPA 1EG9A 1RFSA 4NBBD 2E4QA 3H1IE 2YFIA 2XSHA 1ULIA 2XSOA 2E76D 3GTEA 1ULJA 1RIEA 3DQYA 2DE7D 4QCKA 2HMKA 2BCCE 3GB4A 2JZAA 4U3FE 1PPJE 1FQTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HM4 A;  4HM8 A;  2HMJ A;  4HM1 A;  2YFJ A;  4QUR A;  4HM5 A;  3H1H E;  3VMG D;  5HL4 A;  4NBC D;  3L74 E;  2E4P A;  3L73 E;  3CXH E;  4QDF A;  4NBE D;  2GBW A;  1O7W A;  2Q3W A;  2QJP C;  2BMQ A;  1Q90 C;  3L71 E;  2XR8 A;  3BCC E;  4P1B H;  1NTZ E;  2NVG A;  3GKE A;  3VMH D;  5KLV E;  1SQX E;  4NB8 D;  2DE5 D;  1NYK A;  2JO6 A;  5AEW A;  1KYO E;  4NBH D;  3VMI D;  4OGQ D;  2B24 A;  5KKZ C;  1VM9 A;  3H1J E;  3L72 E;  1KB9 E;  4QDD A;  2IBZ E;  1VF5 D;  2B1X A;  2FYU E;  2YVJ B;  1O7P A;  1G8K B;  1VCK A;  1SQV E;  4NB9 D;  2NVE A;  4QDC A;  1P84 E;  3EN1 A;  2DE6 D;  3GL2 A;  2YIU C;  4NBD D;  1BE3 E;  2E75 D;  4HM6 A;  4PV1 D;  2D2C D;  3CX5 E;  4H0L D;  3GZY A;  4HM3 A;  1SQB E;  1L0N E;  5KLI C;  4H13 D;  1NTK E;  1EZV E;  4QUQ A;  1NTM E;  1O7G A;  3GZX A;  4NBG D;  3GL0 A;  2HML A;  2I7F A;  2XRX A;  4P1C H;  3C0D A;  2FYN C;  3EQQ A;  3GCE A;  4PD4 E;  2NUK A;  3GTS A;  2CKF A;  3TGU E;  5BOK A;  1UUW A;  4HM0 A;  3H1L E;  2E74 D;  2GBX A;  1G8J B;  1UUV A;  2A06 E;  4HM2 A;  1SJG A;  2HMN A;  2QJK C;  4NBA D;  1ZRT E;  5AEU A;  2NVF A;  2BMO A;  3N0Q A;  1WQL A;  2HMM A;  4AIV A;  2YFL A;  3GOB A;  5CXM A;  4NBF D;  1O7N A;  2QJY C;  4HKV A;  1SQQ E;  3L75 E;  4H44 D;  1JM1 A;  2QPZ A;  3D89 A;  2NWF A;  1O7H A;  3CWB E;  3L70 E;  4EMJ B;  1L0L E;  3H1K E;  2HMO A;  1NDO A;  4AAY B;  1NU1 E;  4HM7 A;  2ZYL A;  4QDF B;  3VCP A;  3VCA A;  2ZT9 D;  1BCC E;  1O7M A;  2BMR A;  1PP9 E;  1SQP E;  2NUM A;  3FOU A;  4HJL A;  3AZC A;  4QUP A;  1EG9 A;  1RFS A;  4NBB D;  2E4Q A;  3H1I E;  2YFI A;  2XSH A;  1ULI A;  2XSO A;  2E76 D;  3GTE A;  1ULJ A;  1RIE A;  3DQY A;  2DE7 D;  4QCK A;  2HMK A;  2BCC E;  3GB4 A;  2JZA A;  4U3F E;  1PPJ E;  1FQT A; 
#chains in the Genus database with same CATH topology
 4HM4 A;  4HM8 A;  2HMJ A;  4HM1 A;  2YFJ A;  4QUR A;  4HM5 A;  3H1H E;  3VMG D;  5HL4 A;  4NBC D;  3L74 E;  2E4P A;  3L73 E;  3CXH E;  4QDF A;  4NBE D;  2GBW A;  1O7W A;  2Q3W A;  2QJP C;  2BMQ A;  1Q90 C;  3L71 E;  2XR8 A;  3BCC E;  4P1B H;  1NTZ E;  2NVG A;  3GKE A;  3VMH D;  5KLV E;  1SQX E;  4NB8 D;  2DE5 D;  1NYK A;  2JO6 A;  5AEW A;  1KYO E;  4NBH D;  3VMI D;  4OGQ D;  2B24 A;  5KKZ C;  1VM9 A;  3H1J E;  3L72 E;  1KB9 E;  4QDD A;  2IBZ E;  1VF5 D;  2B1X A;  2FYU E;  2YVJ B;  1O7P A;  1G8K B;  1VCK A;  1SQV E;  4NB9 D;  2NVE A;  4QDC A;  1P84 E;  3EN1 A;  2DE6 D;  3GL2 A;  2YIU C;  4NBD D;  1BE3 E;  2E75 D;  4HM6 A;  4PV1 D;  2D2C D;  3CX5 E;  4H0L D;  3GZY A;  4HM3 A;  1SQB E;  1L0N E;  5KLI C;  4H13 D;  1NTK E;  1EZV E;  4QUQ A;  1NTM E;  1O7G A;  3GZX A;  4NBG D;  3GL0 A;  2HML A;  2I7F A;  2XRX A;  4P1C H;  3C0D A;  2FYN C;  3EQQ A;  3GCE A;  4PD4 E;  2NUK A;  3GTS A;  2CKF A;  3TGU E;  5BOK A;  1UUW A;  4HM0 A;  3H1L E;  2E74 D;  2GBX A;  1G8J B;  1UUV A;  2A06 E;  4HM2 A;  1SJG A;  2HMN A;  2QJK C;  4NBA D;  1ZRT E;  5AEU A;  2NVF A;  2BMO A;  3N0Q A;  1WQL A;  2HMM A;  4AIV A;  2YFL A;  3GOB A;  5CXM A;  4NBF D;  1O7N A;  2QJY C;  4HKV A;  1SQQ E;  3L75 E;  4H44 D;  1JM1 A;  2QPZ A;  3D89 A;  2NWF A;  1O7H A;  3CWB E;  3L70 E;  4EMJ B;  1L0L E;  3H1K E;  2HMO A;  1NDO A;  4AAY B;  1NU1 E;  4HM7 A;  2ZYL A;  4QDF B;  3VCP A;  3VCA A;  2ZT9 D;  1BCC E;  1O7M A;  2BMR A;  1PP9 E;  1SQP E;  2NUM A;  3FOU A;  4HJL A;  3AZC A;  4QUP A;  1EG9 A;  1RFS A;  4NBB D;  2E4Q A;  3H1I E;  2YFI A;  2XSH A;  1ULI A;  2XSO A;  2E76 D;  3GTE A;  1ULJ A;  1RIE A;  3DQY A;  2DE7 D;  4QCK A;  2HMK A;  2BCC E;  3GB4 A;  2JZA A;  4U3F E;  1PPJ E;  1FQT A; 
#chains in the Genus database with same CATH homology
 4HM4 A;  4HM8 A;  2HMJ A;  4HM1 A;  2YFJ A;  4QUR A;  4HM5 A;  3H1H E;  3VMG D;  5HL4 A;  4NBC D;  3L74 E;  2E4P A;  3L73 E;  3CXH E;  4QDF A;  4NBE D;  2GBW A;  1O7W A;  2Q3W A;  2QJP C;  2BMQ A;  1Q90 C;  3L71 E;  2XR8 A;  3BCC E;  4P1B H;  1NTZ E;  2NVG A;  3GKE A;  3VMH D;  5KLV E;  1SQX E;  4NB8 D;  2DE5 D;  1NYK A;  2JO6 A;  5AEW A;  1KYO E;  4NBH D;  3VMI D;  4OGQ D;  2B24 A;  5KKZ C;  1VM9 A;  3H1J E;  3L72 E;  1KB9 E;  4QDD A;  2IBZ E;  1VF5 D;  2B1X A;  2FYU E;  2YVJ B;  1O7P A;  1G8K B;  1VCK A;  1SQV E;  4NB9 D;  2NVE A;  4QDC A;  1P84 E;  3EN1 A;  2DE6 D;  3GL2 A;  2YIU C;  4NBD D;  1BE3 E;  2E75 D;  4HM6 A;  4PV1 D;  2D2C D;  3CX5 E;  4H0L D;  3GZY A;  4HM3 A;  1SQB E;  1L0N E;  5KLI C;  4H13 D;  1NTK E;  1EZV E;  4QUQ A;  1NTM E;  1O7G A;  3GZX A;  4NBG D;  3GL0 A;  2HML A;  2I7F A;  2XRX A;  4P1C H;  3C0D A;  2FYN C;  3EQQ A;  3GCE A;  4PD4 E;  2NUK A;  3GTS A;  2CKF A;  3TGU E;  5BOK A;  1UUW A;  4HM0 A;  3H1L E;  2E74 D;  2GBX A;  1G8J B;  1UUV A;  2A06 E;  4HM2 A;  1SJG A;  2HMN A;  2QJK C;  4NBA D;  1ZRT E;  5AEU A;  2NVF A;  2BMO A;  3N0Q A;  1WQL A;  2HMM A;  4AIV A;  2YFL A;  3GOB A;  5CXM A;  4NBF D;  1O7N A;  2QJY C;  4HKV A;  1SQQ E;  3L75 E;  4H44 D;  1JM1 A;  2QPZ A;  3D89 A;  2NWF A;  1O7H A;  3CWB E;  3L70 E;  4EMJ B;  1L0L E;  3H1K E;  2HMO A;  1NDO A;  4AAY B;  1NU1 E;  4HM7 A;  2ZYL A;  4QDF B;  3VCP A;  3VCA A;  2ZT9 D;  1BCC E;  1O7M A;  2BMR A;  1PP9 E;  1SQP E;  2NUM A;  3FOU A;  4HJL A;  3AZC A;  4QUP A;  1EG9 A;  1RFS A;  4NBB D;  2E4Q A;  3H1I E;  2YFI A;  2XSH A;  1ULI A;  2XSO A;  2E76 D;  3GTE A;  1ULJ A;  1RIE A;  3DQY A;  2DE7 D;  4QCK A;  2HMK A;  2BCC E;  3GB4 A;  2JZA A;  4U3F E;  1PPJ E;  1FQT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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