4NBAD

Carbazole-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbaD00
2QJKC 4NBFD 4QDFA 2YFIA 4EMJB 2HMJA 1SQPE 1FQTA 4HM1A 1SQQE 1ULIA 2BCCE 2NWFA 2FYUE 5AEWA 4HM3A 4P1BH 3VMID 2E76D 1P84E 4NBCD 2NVFA 4NBAD 4OGQD 1PP9E 2DE5D 4HM6A 1G8KB 2ZT9D 4QUPA 4HM2A 3GL0A 3H1LE 3GZYA 2GBWA 1KYOE 4P1CH 4AAYB 3VMGD 3L74E 5KLVE 1O7HA 4NB9D 3L73E 3L72E 5HL4A 1KB9E 2XSOA 1Q90C 3GL2A 1O7WA 4HM0A 4QDCA 2YFJA 3GKEA 3L70E 4QDFB 2Q3WA 1RIEA 5AEUA 2HMOA 2NVGA 2CKFA 3N0QA 3CXHE 3EN1A 1BE3E 2NUKA 2GBXA 3AZCA 3GZXA 1NU1E 2QJPC 1WQLA 1EG9A 1L0LE 4HM5A 4QCKA 4HM8A 4NBHD 3GTSA 3H1IE 4HM7A 3BCCE 1ULJA 2D2CD 1ZRTE 2YVJB 3GB4A 1NTME 2E4QA 2HMMA 1JM1A 2E75D 5KKZC 3L71E 3H1HE 4QUQA 2A06E 2BMQA 2I7FA 2E4PA 2B24A 2ZYLA 2XRXA 1VM9A 1VCKA 3VMHD 4AIVA 1EZVE 4NBED 2XSHA 1UUVA 3TGUE 1NDOA 3DQYA 3VCPA 4HKVA 3CX5E 5BOKA 3FOUA 1SJGA 1G8JB 1VF5D 2QPZA 1SQVE 4H44D 3GOBA 4PD4E 1BCCE 2IBZE 3GTEA 1UUWA 4QDDA 3H1JE 1PPJE 2HMKA 1SQXE 2XR8A 4NB8D 1L0NE 1NTKE 2BMRA 2DE7D 1O7GA 4QURA 3L75E 5CXMA 3VCAA 2HMNA 2FYNC 3EQQA 4H0LD 1NYKA 4NBDD 5KLIC 1O7NA 3C0DA 4NBGD 2DE6D 2B1XA 2BMOA 2HMLA 2JO6A 4NBBD 1O7MA 1O7PA 1SQBE 4PV1D 2YIUC 2QJYC 2E74D 2NVEA 4U3FE 1NTZE 2JZAA 3GCEA 4HJLA 4H13D 3H1KE 3D89A 2NUMA 2YFLA 4HM4A 1RFSA 3CWBE
chains in the Genus database with same CATH superfamily
2QJKC 4NBFD 4QDFA 2YFIA 4EMJB 2HMJA 1SQPE 1FQTA 4HM1A 1SQQE 1ULIA 2BCCE 2NWFA 2FYUE 5AEWA 4HM3A 4P1BH 3VMID 2E76D 1P84E 4NBCD 2NVFA 4NBAD 4OGQD 1PP9E 2DE5D 4HM6A 1G8KB 2ZT9D 4QUPA 4HM2A 3GL0A 3H1LE 3GZYA 2GBWA 1KYOE 4P1CH 4AAYB 3VMGD 3L74E 5KLVE 1O7HA 4NB9D 3L73E 3L72E 5HL4A 1KB9E 2XSOA 1Q90C 3GL2A 1O7WA 4HM0A 4QDCA 2YFJA 3GKEA 3L70E 4QDFB 2Q3WA 1RIEA 5AEUA 2HMOA 2NVGA 2CKFA 3N0QA 3CXHE 3EN1A 1BE3E 2NUKA 2GBXA 3AZCA 3GZXA 1NU1E 2QJPC 1WQLA 1EG9A 1L0LE 4HM5A 4QCKA 4HM8A 4NBHD 3GTSA 3H1IE 4HM7A 3BCCE 1ULJA 2D2CD 1ZRTE 2YVJB 3GB4A 1NTME 2E4QA 2HMMA 1JM1A 2E75D 5KKZC 3L71E 3H1HE 4QUQA 2A06E 2BMQA 2I7FA 2E4PA 2B24A 2ZYLA 2XRXA 1VM9A 1VCKA 3VMHD 4AIVA 1EZVE 4NBED 2XSHA 1UUVA 3TGUE 1NDOA 3DQYA 3VCPA 4HKVA 3CX5E 5BOKA 3FOUA 1SJGA 1G8JB 1VF5D 2QPZA 1SQVE 4H44D 3GOBA 4PD4E 1BCCE 2IBZE 3GTEA 1UUWA 4QDDA 3H1JE 1PPJE 2HMKA 1SQXE 2XR8A 4NB8D 1L0NE 1NTKE 2BMRA 2DE7D 1O7GA 4QURA 3L75E 5CXMA 3VCAA 2HMNA 2FYNC 3EQQA 4H0LD 1NYKA 4NBDD 5KLIC 1O7NA 3C0DA 4NBGD 2DE6D 2B1XA 2BMOA 2HMLA 2JO6A 4NBBD 1O7MA 1O7PA 1SQBE 4PV1D 2YIUC 2QJYC 2E74D 2NVEA 4U3FE 1NTZE 2JZAA 3GCEA 4HJLA 4H13D 3H1KE 3D89A 2NUMA 2YFLA 4HM4A 1RFSA 3CWBE
chains in the Genus database with same CATH topology
2QJKC 4NBFD 4QDFA 2YFIA 4EMJB 2HMJA 1SQPE 1FQTA 4HM1A 1SQQE 1ULIA 2BCCE 2NWFA 2FYUE 5AEWA 4HM3A 4P1BH 3VMID 2E76D 1P84E 4NBCD 2NVFA 4NBAD 4OGQD 1PP9E 2DE5D 4HM6A 1G8KB 2ZT9D 4QUPA 4HM2A 3GL0A 3H1LE 3GZYA 2GBWA 1KYOE 4P1CH 4AAYB 3VMGD 3L74E 5KLVE 1O7HA 4NB9D 3L73E 3L72E 5HL4A 1KB9E 2XSOA 1Q90C 3GL2A 1O7WA 4HM0A 4QDCA 2YFJA 3GKEA 3L70E 4QDFB 2Q3WA 1RIEA 5AEUA 2HMOA 2NVGA 2CKFA 3N0QA 3CXHE 3EN1A 1BE3E 2NUKA 2GBXA 3AZCA 3GZXA 1NU1E 2QJPC 1WQLA 1EG9A 1L0LE 4HM5A 4QCKA 4HM8A 4NBHD 3GTSA 3H1IE 4HM7A 3BCCE 1ULJA 2D2CD 1ZRTE 2YVJB 3GB4A 1NTME 2E4QA 2HMMA 1JM1A 2E75D 5KKZC 3L71E 3H1HE 4QUQA 2A06E 2BMQA 2I7FA 2E4PA 2B24A 2ZYLA 2XRXA 1VM9A 1VCKA 3VMHD 4AIVA 1EZVE 4NBED 2XSHA 1UUVA 3TGUE 1NDOA 3DQYA 3VCPA 4HKVA 3CX5E 5BOKA 3FOUA 1SJGA 1G8JB 1VF5D 2QPZA 1SQVE 4H44D 3GOBA 4PD4E 1BCCE 2IBZE 3GTEA 1UUWA 4QDDA 3H1JE 1PPJE 2HMKA 1SQXE 2XR8A 4NB8D 1L0NE 1NTKE 2BMRA 2DE7D 1O7GA 4QURA 3L75E 5CXMA 3VCAA 2HMNA 2FYNC 3EQQA 4H0LD 1NYKA 4NBDD 5KLIC 1O7NA 3C0DA 4NBGD 2DE6D 2B1XA 2BMOA 2HMLA 2JO6A 4NBBD 1O7MA 1O7PA 1SQBE 4PV1D 2YIUC 2QJYC 2E74D 2NVEA 4U3FE 1NTZE 2JZAA 3GCEA 4HJLA 4H13D 3H1KE 3D89A 2NUMA 2YFLA 4HM4A 1RFSA 3CWBE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJK C;  4NBF D;  4QDF A;  2YFI A;  4EMJ B;  2HMJ A;  1SQP E;  1FQT A;  4HM1 A;  1SQQ E;  1ULI A;  2BCC E;  2NWF A;  2FYU E;  5AEW A;  4HM3 A;  4P1B H;  3VMI D;  2E76 D;  1P84 E;  4NBC D;  2NVF A;  4NBA D;  4OGQ D;  1PP9 E;  2DE5 D;  4HM6 A;  1G8K B;  2ZT9 D;  4QUP A;  4HM2 A;  3GL0 A;  3H1L E;  3GZY A;  2GBW A;  1KYO E;  4P1C H;  4AAY B;  3VMG D;  3L74 E;  5KLV E;  1O7H A;  4NB9 D;  3L73 E;  3L72 E;  5HL4 A;  1KB9 E;  2XSO A;  1Q90 C;  3GL2 A;  1O7W A;  4HM0 A;  4QDC A;  2YFJ A;  3GKE A;  3L70 E;  4QDF B;  2Q3W A;  1RIE A;  5AEU A;  2HMO A;  2NVG A;  2CKF A;  3N0Q A;  3CXH E;  3EN1 A;  1BE3 E;  2NUK A;  2GBX A;  3AZC A;  3GZX A;  1NU1 E;  2QJP C;  1WQL A;  1EG9 A;  1L0L E;  4HM5 A;  4QCK A;  4HM8 A;  4NBH D;  3GTS A;  3H1I E;  4HM7 A;  3BCC E;  1ULJ A;  2D2C D;  1ZRT E;  2YVJ B;  3GB4 A;  1NTM E;  2E4Q A;  2HMM A;  1JM1 A;  2E75 D;  5KKZ C;  3L71 E;  3H1H E;  4QUQ A;  2A06 E;  2BMQ A;  2I7F A;  2E4P A;  2B24 A;  2ZYL A;  2XRX A;  1VM9 A;  1VCK A;  3VMH D;  4AIV A;  1EZV E;  4NBE D;  2XSH A;  1UUV A;  3TGU E;  1NDO A;  3DQY A;  3VCP A;  4HKV A;  3CX5 E;  5BOK A;  3FOU A;  1SJG A;  1G8J B;  1VF5 D;  2QPZ A;  1SQV E;  4H44 D;  3GOB A;  4PD4 E;  1BCC E;  2IBZ E;  3GTE A;  1UUW A;  4QDD A;  3H1J E;  1PPJ E;  2HMK A;  1SQX E;  2XR8 A;  4NB8 D;  1L0N E;  1NTK E;  2BMR A;  2DE7 D;  1O7G A;  4QUR A;  3L75 E;  5CXM A;  3VCA A;  2HMN A;  2FYN C;  3EQQ A;  4H0L D;  1NYK A;  4NBD D;  5KLI C;  1O7N A;  3C0D A;  4NBG D;  2DE6 D;  2B1X A;  2BMO A;  2HML A;  2JO6 A;  4NBB D;  1O7M A;  1O7P A;  1SQB E;  4PV1 D;  2YIU C;  2QJY C;  2E74 D;  2NVE A;  4U3F E;  1NTZ E;  2JZA A;  3GCE A;  4HJL A;  4H13 D;  3H1K E;  3D89 A;  2NUM A;  2YFL A;  4HM4 A;  1RFS A;  3CWB E; 
#chains in the Genus database with same CATH topology
 2QJK C;  4NBF D;  4QDF A;  2YFI A;  4EMJ B;  2HMJ A;  1SQP E;  1FQT A;  4HM1 A;  1SQQ E;  1ULI A;  2BCC E;  2NWF A;  2FYU E;  5AEW A;  4HM3 A;  4P1B H;  3VMI D;  2E76 D;  1P84 E;  4NBC D;  2NVF A;  4NBA D;  4OGQ D;  1PP9 E;  2DE5 D;  4HM6 A;  1G8K B;  2ZT9 D;  4QUP A;  4HM2 A;  3GL0 A;  3H1L E;  3GZY A;  2GBW A;  1KYO E;  4P1C H;  4AAY B;  3VMG D;  3L74 E;  5KLV E;  1O7H A;  4NB9 D;  3L73 E;  3L72 E;  5HL4 A;  1KB9 E;  2XSO A;  1Q90 C;  3GL2 A;  1O7W A;  4HM0 A;  4QDC A;  2YFJ A;  3GKE A;  3L70 E;  4QDF B;  2Q3W A;  1RIE A;  5AEU A;  2HMO A;  2NVG A;  2CKF A;  3N0Q A;  3CXH E;  3EN1 A;  1BE3 E;  2NUK A;  2GBX A;  3AZC A;  3GZX A;  1NU1 E;  2QJP C;  1WQL A;  1EG9 A;  1L0L E;  4HM5 A;  4QCK A;  4HM8 A;  4NBH D;  3GTS A;  3H1I E;  4HM7 A;  3BCC E;  1ULJ A;  2D2C D;  1ZRT E;  2YVJ B;  3GB4 A;  1NTM E;  2E4Q A;  2HMM A;  1JM1 A;  2E75 D;  5KKZ C;  3L71 E;  3H1H E;  4QUQ A;  2A06 E;  2BMQ A;  2I7F A;  2E4P A;  2B24 A;  2ZYL A;  2XRX A;  1VM9 A;  1VCK A;  3VMH D;  4AIV A;  1EZV E;  4NBE D;  2XSH A;  1UUV A;  3TGU E;  1NDO A;  3DQY A;  3VCP A;  4HKV A;  3CX5 E;  5BOK A;  3FOU A;  1SJG A;  1G8J B;  1VF5 D;  2QPZ A;  1SQV E;  4H44 D;  3GOB A;  4PD4 E;  1BCC E;  2IBZ E;  3GTE A;  1UUW A;  4QDD A;  3H1J E;  1PPJ E;  2HMK A;  1SQX E;  2XR8 A;  4NB8 D;  1L0N E;  1NTK E;  2BMR A;  2DE7 D;  1O7G A;  4QUR A;  3L75 E;  5CXM A;  3VCA A;  2HMN A;  2FYN C;  3EQQ A;  4H0L D;  1NYK A;  4NBD D;  5KLI C;  1O7N A;  3C0D A;  4NBG D;  2DE6 D;  2B1X A;  2BMO A;  2HML A;  2JO6 A;  4NBB D;  1O7M A;  1O7P A;  1SQB E;  4PV1 D;  2YIU C;  2QJY C;  2E74 D;  2NVE A;  4U3F E;  1NTZ E;  2JZA A;  3GCE A;  4HJL A;  4H13 D;  3H1K E;  3D89 A;  2NUM A;  2YFL A;  4HM4 A;  1RFS A;  3CWB E; 
#chains in the Genus database with same CATH homology
 2QJK C;  4NBF D;  4QDF A;  2YFI A;  4EMJ B;  2HMJ A;  1SQP E;  1FQT A;  4HM1 A;  1SQQ E;  1ULI A;  2BCC E;  2NWF A;  2FYU E;  5AEW A;  4HM3 A;  4P1B H;  3VMI D;  2E76 D;  1P84 E;  4NBC D;  2NVF A;  4NBA D;  4OGQ D;  1PP9 E;  2DE5 D;  4HM6 A;  1G8K B;  2ZT9 D;  4QUP A;  4HM2 A;  3GL0 A;  3H1L E;  3GZY A;  2GBW A;  1KYO E;  4P1C H;  4AAY B;  3VMG D;  3L74 E;  5KLV E;  1O7H A;  4NB9 D;  3L73 E;  3L72 E;  5HL4 A;  1KB9 E;  2XSO A;  1Q90 C;  3GL2 A;  1O7W A;  4HM0 A;  4QDC A;  2YFJ A;  3GKE A;  3L70 E;  4QDF B;  2Q3W A;  1RIE A;  5AEU A;  2HMO A;  2NVG A;  2CKF A;  3N0Q A;  3CXH E;  3EN1 A;  1BE3 E;  2NUK A;  2GBX A;  3AZC A;  3GZX A;  1NU1 E;  2QJP C;  1WQL A;  1EG9 A;  1L0L E;  4HM5 A;  4QCK A;  4HM8 A;  4NBH D;  3GTS A;  3H1I E;  4HM7 A;  3BCC E;  1ULJ A;  2D2C D;  1ZRT E;  2YVJ B;  3GB4 A;  1NTM E;  2E4Q A;  2HMM A;  1JM1 A;  2E75 D;  5KKZ C;  3L71 E;  3H1H E;  4QUQ A;  2A06 E;  2BMQ A;  2I7F A;  2E4P A;  2B24 A;  2ZYL A;  2XRX A;  1VM9 A;  1VCK A;  3VMH D;  4AIV A;  1EZV E;  4NBE D;  2XSH A;  1UUV A;  3TGU E;  1NDO A;  3DQY A;  3VCP A;  4HKV A;  3CX5 E;  5BOK A;  3FOU A;  1SJG A;  1G8J B;  1VF5 D;  2QPZ A;  1SQV E;  4H44 D;  3GOB A;  4PD4 E;  1BCC E;  2IBZ E;  3GTE A;  1UUW A;  4QDD A;  3H1J E;  1PPJ E;  2HMK A;  1SQX E;  2XR8 A;  4NB8 D;  1L0N E;  1NTK E;  2BMR A;  2DE7 D;  1O7G A;  4QUR A;  3L75 E;  5CXM A;  3VCA A;  2HMN A;  2FYN C;  3EQQ A;  4H0L D;  1NYK A;  4NBD D;  5KLI C;  1O7N A;  3C0D A;  4NBG D;  2DE6 D;  2B1X A;  2BMO A;  2HML A;  2JO6 A;  4NBB D;  1O7M A;  1O7P A;  1SQB E;  4PV1 D;  2YIU C;  2QJY C;  2E74 D;  2NVE A;  4U3F E;  1NTZ E;  2JZA A;  3GCE A;  4HJL A;  4H13 D;  3H1K E;  3D89 A;  2NUM A;  2YFL A;  4HM4 A;  1RFS A;  3CWB E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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