4NBAD

Carbazole-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Janthinobacterium
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
molecule keywords Terminal oxygenase component of carbazole
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbaD00
1VM9A 3EN1A 4OGQD 2I7FA 4HJLA 5KKZC 4HM7A 2E4QA 1O7PA 4HM5A 3VMID 2XRXA 2HMLA 2A06E 3BCCE 3GZXA 2JO6A 2GBWA 1O7NA 3N0QA 1KYOE 1ULIA 5BOKA 2QJKC 2XSHA 3GZYA 2ZT9D 4QUQA 4HM0A 4HM2A 2B1XA 3H1LE 4NBED 4H13D 1L0LE 4U3FE 1NTME 1ULJA 3H1HE 2NVEA 4QDDA 2JZAA 5HL4A 1RFSA 1SJGA 2FYNC 3EQQA 4HM1A 3DQYA 3GL0A 3L71E 2HMJA 1EZVE 1G8JB 2NUMA 4NBAD 3CXHE 4NBDD 2E74D 1UUVA 2DE5D 2E76D 2ZYLA 3C0DA 4AAYB 4H44D 2BMRA 3GB4A 1SQQE 2B24A 3L73E 2BMQA 3GTEA 1L0NE 1PP9E 3D89A 4QDFB 1NTZE 2FYUE 2HMOA 1Q90C 4NBHD 2QJPC 3H1KE 5KLVE 2YVJB 1SQVE 1NDOA 2XR8A 3GCEA 4HM8A 4NBGD 2XSOA 2IBZE 4H0LD 1O7WA 3GOBA 4HM4A 1ZRTE 3GL2A 5CXMA 4NB9D 2HMMA 2YFLA 1P84E 2NVFA 2NUKA 1PPJE 3TGUE 1SQBE 2NWFA 3AZCA 3L72E 3VMHD 4NB8D 4HKVA 4QUPA 2GBXA 2QPZA 1BCCE 4P1CH 3VCAA 5AEWA 4HM3A 3GKEA 3VCPA 2DE7D 1UUWA 3H1IE 1VCKA 1O7GA 3L74E 2YFIA 4P1BH 4PD4E 1BE3E 1EG9A 1O7MA 3H1JE 4QDFA 1WQLA 2YFJA 1NU1E 2E75D 3CWBE 2NVGA 2YIUC 2QJYC 1JM1A 4AIVA 4QCKA 2BCCE 3FOUA 5AEUA 1O7HA 2D2CD 4PV1D 4QURA 1SQPE 1G8KB 1FQTA 2DE6D 3L70E 4EMJB 3CX5E 4QDCA 4NBBD 1KB9E 3L75E 2HMNA 3VMGD 5KLIC 1SQXE 2HMKA 4HM6A 2BMOA 1RIEA 4NBCD 2CKFA 2E4PA 4NBFD 2Q3WA 3GTSA 1NTKE 1NYKA 1VF5D
chains in the Genus database with same CATH superfamily
1VM9A 3EN1A 4OGQD 2I7FA 4HJLA 5KKZC 4HM7A 2E4QA 1O7PA 4HM5A 3VMID 2XRXA 2HMLA 2A06E 3BCCE 3GZXA 2JO6A 2GBWA 1O7NA 3N0QA 1KYOE 1ULIA 5BOKA 2QJKC 2XSHA 3GZYA 2ZT9D 4QUQA 4HM0A 4HM2A 2B1XA 3H1LE 4NBED 4H13D 1L0LE 4U3FE 1NTME 1ULJA 3H1HE 2NVEA 4QDDA 2JZAA 5HL4A 1RFSA 1SJGA 2FYNC 3EQQA 4HM1A 3DQYA 3GL0A 3L71E 2HMJA 1EZVE 1G8JB 2NUMA 4NBAD 3CXHE 4NBDD 2E74D 1UUVA 2DE5D 2E76D 2ZYLA 3C0DA 4AAYB 4H44D 2BMRA 3GB4A 1SQQE 2B24A 3L73E 2BMQA 3GTEA 1L0NE 1PP9E 3D89A 4QDFB 1NTZE 2FYUE 2HMOA 1Q90C 4NBHD 2QJPC 3H1KE 5KLVE 2YVJB 1SQVE 1NDOA 2XR8A 3GCEA 4HM8A 4NBGD 2XSOA 2IBZE 4H0LD 1O7WA 3GOBA 4HM4A 1ZRTE 3GL2A 5CXMA 4NB9D 2HMMA 2YFLA 1P84E 2NVFA 2NUKA 1PPJE 3TGUE 1SQBE 2NWFA 3AZCA 3L72E 3VMHD 4NB8D 4HKVA 4QUPA 2GBXA 2QPZA 1BCCE 4P1CH 3VCAA 5AEWA 4HM3A 3GKEA 3VCPA 2DE7D 1UUWA 3H1IE 1VCKA 1O7GA 3L74E 2YFIA 4P1BH 4PD4E 1BE3E 1EG9A 1O7MA 3H1JE 4QDFA 1WQLA 2YFJA 1NU1E 2E75D 3CWBE 2NVGA 2YIUC 2QJYC 1JM1A 4AIVA 4QCKA 2BCCE 3FOUA 5AEUA 1O7HA 2D2CD 4PV1D 4QURA 1SQPE 1G8KB 1FQTA 2DE6D 3L70E 4EMJB 3CX5E 4QDCA 4NBBD 1KB9E 3L75E 2HMNA 3VMGD 5KLIC 1SQXE 2HMKA 4HM6A 2BMOA 1RIEA 4NBCD 2CKFA 2E4PA 4NBFD 2Q3WA 3GTSA 1NTKE 1NYKA 1VF5D
chains in the Genus database with same CATH topology
1VM9A 3EN1A 4OGQD 2I7FA 4HJLA 5KKZC 4HM7A 2E4QA 1O7PA 4HM5A 3VMID 2XRXA 2HMLA 2A06E 3BCCE 3GZXA 2JO6A 2GBWA 1O7NA 3N0QA 1KYOE 1ULIA 5BOKA 2QJKC 2XSHA 3GZYA 2ZT9D 4QUQA 4HM0A 4HM2A 2B1XA 3H1LE 4NBED 4H13D 1L0LE 4U3FE 1NTME 1ULJA 3H1HE 2NVEA 4QDDA 2JZAA 5HL4A 1RFSA 1SJGA 2FYNC 3EQQA 4HM1A 3DQYA 3GL0A 3L71E 2HMJA 1EZVE 1G8JB 2NUMA 4NBAD 3CXHE 4NBDD 2E74D 1UUVA 2DE5D 2E76D 2ZYLA 3C0DA 4AAYB 4H44D 2BMRA 3GB4A 1SQQE 2B24A 3L73E 2BMQA 3GTEA 1L0NE 1PP9E 3D89A 4QDFB 1NTZE 2FYUE 2HMOA 1Q90C 4NBHD 2QJPC 3H1KE 5KLVE 2YVJB 1SQVE 1NDOA 2XR8A 3GCEA 4HM8A 4NBGD 2XSOA 2IBZE 4H0LD 1O7WA 3GOBA 4HM4A 1ZRTE 3GL2A 5CXMA 4NB9D 2HMMA 2YFLA 1P84E 2NVFA 2NUKA 1PPJE 3TGUE 1SQBE 2NWFA 3AZCA 3L72E 3VMHD 4NB8D 4HKVA 4QUPA 2GBXA 2QPZA 1BCCE 4P1CH 3VCAA 5AEWA 4HM3A 3GKEA 3VCPA 2DE7D 1UUWA 3H1IE 1VCKA 1O7GA 3L74E 2YFIA 4P1BH 4PD4E 1BE3E 1EG9A 1O7MA 3H1JE 4QDFA 1WQLA 2YFJA 1NU1E 2E75D 3CWBE 2NVGA 2YIUC 2QJYC 1JM1A 4AIVA 4QCKA 2BCCE 3FOUA 5AEUA 1O7HA 2D2CD 4PV1D 4QURA 1SQPE 1G8KB 1FQTA 2DE6D 3L70E 4EMJB 3CX5E 4QDCA 4NBBD 1KB9E 3L75E 2HMNA 3VMGD 5KLIC 1SQXE 2HMKA 4HM6A 2BMOA 1RIEA 4NBCD 2CKFA 2E4PA 4NBFD 2Q3WA 3GTSA 1NTKE 1NYKA 1VF5D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VM9 A;  3EN1 A;  4OGQ D;  2I7F A;  4HJL A;  5KKZ C;  4HM7 A;  2E4Q A;  1O7P A;  4HM5 A;  3VMI D;  2XRX A;  2HML A;  2A06 E;  3BCC E;  3GZX A;  2JO6 A;  2GBW A;  1O7N A;  3N0Q A;  1KYO E;  1ULI A;  5BOK A;  2QJK C;  2XSH A;  3GZY A;  2ZT9 D;  4QUQ A;  4HM0 A;  4HM2 A;  2B1X A;  3H1L E;  4NBE D;  4H13 D;  1L0L E;  4U3F E;  1NTM E;  1ULJ A;  3H1H E;  2NVE A;  4QDD A;  2JZA A;  5HL4 A;  1RFS A;  1SJG A;  2FYN C;  3EQQ A;  4HM1 A;  3DQY A;  3GL0 A;  3L71 E;  2HMJ A;  1EZV E;  1G8J B;  2NUM A;  4NBA D;  3CXH E;  4NBD D;  2E74 D;  1UUV A;  2DE5 D;  2E76 D;  2ZYL A;  3C0D A;  4AAY B;  4H44 D;  2BMR A;  3GB4 A;  1SQQ E;  2B24 A;  3L73 E;  2BMQ A;  3GTE A;  1L0N E;  1PP9 E;  3D89 A;  4QDF B;  1NTZ E;  2FYU E;  2HMO A;  1Q90 C;  4NBH D;  2QJP C;  3H1K E;  5KLV E;  2YVJ B;  1SQV E;  1NDO A;  2XR8 A;  3GCE A;  4HM8 A;  4NBG D;  2XSO A;  2IBZ E;  4H0L D;  1O7W A;  3GOB A;  4HM4 A;  1ZRT E;  3GL2 A;  5CXM A;  4NB9 D;  2HMM A;  2YFL A;  1P84 E;  2NVF A;  2NUK A;  1PPJ E;  3TGU E;  1SQB E;  2NWF A;  3AZC A;  3L72 E;  3VMH D;  4NB8 D;  4HKV A;  4QUP A;  2GBX A;  2QPZ A;  1BCC E;  4P1C H;  3VCA A;  5AEW A;  4HM3 A;  3GKE A;  3VCP A;  2DE7 D;  1UUW A;  3H1I E;  1VCK A;  1O7G A;  3L74 E;  2YFI A;  4P1B H;  4PD4 E;  1BE3 E;  1EG9 A;  1O7M A;  3H1J E;  4QDF A;  1WQL A;  2YFJ A;  1NU1 E;  2E75 D;  3CWB E;  2NVG A;  2YIU C;  2QJY C;  1JM1 A;  4AIV A;  4QCK A;  2BCC E;  3FOU A;  5AEU A;  1O7H A;  2D2C D;  4PV1 D;  4QUR A;  1SQP E;  1G8K B;  1FQT A;  2DE6 D;  3L70 E;  4EMJ B;  3CX5 E;  4QDC A;  4NBB D;  1KB9 E;  3L75 E;  2HMN A;  3VMG D;  5KLI C;  1SQX E;  2HMK A;  4HM6 A;  2BMO A;  1RIE A;  4NBC D;  2CKF A;  2E4P A;  4NBF D;  2Q3W A;  3GTS A;  1NTK E;  1NYK A;  1VF5 D; 
#chains in the Genus database with same CATH topology
 1VM9 A;  3EN1 A;  4OGQ D;  2I7F A;  4HJL A;  5KKZ C;  4HM7 A;  2E4Q A;  1O7P A;  4HM5 A;  3VMI D;  2XRX A;  2HML A;  2A06 E;  3BCC E;  3GZX A;  2JO6 A;  2GBW A;  1O7N A;  3N0Q A;  1KYO E;  1ULI A;  5BOK A;  2QJK C;  2XSH A;  3GZY A;  2ZT9 D;  4QUQ A;  4HM0 A;  4HM2 A;  2B1X A;  3H1L E;  4NBE D;  4H13 D;  1L0L E;  4U3F E;  1NTM E;  1ULJ A;  3H1H E;  2NVE A;  4QDD A;  2JZA A;  5HL4 A;  1RFS A;  1SJG A;  2FYN C;  3EQQ A;  4HM1 A;  3DQY A;  3GL0 A;  3L71 E;  2HMJ A;  1EZV E;  1G8J B;  2NUM A;  4NBA D;  3CXH E;  4NBD D;  2E74 D;  1UUV A;  2DE5 D;  2E76 D;  2ZYL A;  3C0D A;  4AAY B;  4H44 D;  2BMR A;  3GB4 A;  1SQQ E;  2B24 A;  3L73 E;  2BMQ A;  3GTE A;  1L0N E;  1PP9 E;  3D89 A;  4QDF B;  1NTZ E;  2FYU E;  2HMO A;  1Q90 C;  4NBH D;  2QJP C;  3H1K E;  5KLV E;  2YVJ B;  1SQV E;  1NDO A;  2XR8 A;  3GCE A;  4HM8 A;  4NBG D;  2XSO A;  2IBZ E;  4H0L D;  1O7W A;  3GOB A;  4HM4 A;  1ZRT E;  3GL2 A;  5CXM A;  4NB9 D;  2HMM A;  2YFL A;  1P84 E;  2NVF A;  2NUK A;  1PPJ E;  3TGU E;  1SQB E;  2NWF A;  3AZC A;  3L72 E;  3VMH D;  4NB8 D;  4HKV A;  4QUP A;  2GBX A;  2QPZ A;  1BCC E;  4P1C H;  3VCA A;  5AEW A;  4HM3 A;  3GKE A;  3VCP A;  2DE7 D;  1UUW A;  3H1I E;  1VCK A;  1O7G A;  3L74 E;  2YFI A;  4P1B H;  4PD4 E;  1BE3 E;  1EG9 A;  1O7M A;  3H1J E;  4QDF A;  1WQL A;  2YFJ A;  1NU1 E;  2E75 D;  3CWB E;  2NVG A;  2YIU C;  2QJY C;  1JM1 A;  4AIV A;  4QCK A;  2BCC E;  3FOU A;  5AEU A;  1O7H A;  2D2C D;  4PV1 D;  4QUR A;  1SQP E;  1G8K B;  1FQT A;  2DE6 D;  3L70 E;  4EMJ B;  3CX5 E;  4QDC A;  4NBB D;  1KB9 E;  3L75 E;  2HMN A;  3VMG D;  5KLI C;  1SQX E;  2HMK A;  4HM6 A;  2BMO A;  1RIE A;  4NBC D;  2CKF A;  2E4P A;  4NBF D;  2Q3W A;  3GTS A;  1NTK E;  1NYK A;  1VF5 D; 
#chains in the Genus database with same CATH homology
 1VM9 A;  3EN1 A;  4OGQ D;  2I7F A;  4HJL A;  5KKZ C;  4HM7 A;  2E4Q A;  1O7P A;  4HM5 A;  3VMI D;  2XRX A;  2HML A;  2A06 E;  3BCC E;  3GZX A;  2JO6 A;  2GBW A;  1O7N A;  3N0Q A;  1KYO E;  1ULI A;  5BOK A;  2QJK C;  2XSH A;  3GZY A;  2ZT9 D;  4QUQ A;  4HM0 A;  4HM2 A;  2B1X A;  3H1L E;  4NBE D;  4H13 D;  1L0L E;  4U3F E;  1NTM E;  1ULJ A;  3H1H E;  2NVE A;  4QDD A;  2JZA A;  5HL4 A;  1RFS A;  1SJG A;  2FYN C;  3EQQ A;  4HM1 A;  3DQY A;  3GL0 A;  3L71 E;  2HMJ A;  1EZV E;  1G8J B;  2NUM A;  4NBA D;  3CXH E;  4NBD D;  2E74 D;  1UUV A;  2DE5 D;  2E76 D;  2ZYL A;  3C0D A;  4AAY B;  4H44 D;  2BMR A;  3GB4 A;  1SQQ E;  2B24 A;  3L73 E;  2BMQ A;  3GTE A;  1L0N E;  1PP9 E;  3D89 A;  4QDF B;  1NTZ E;  2FYU E;  2HMO A;  1Q90 C;  4NBH D;  2QJP C;  3H1K E;  5KLV E;  2YVJ B;  1SQV E;  1NDO A;  2XR8 A;  3GCE A;  4HM8 A;  4NBG D;  2XSO A;  2IBZ E;  4H0L D;  1O7W A;  3GOB A;  4HM4 A;  1ZRT E;  3GL2 A;  5CXM A;  4NB9 D;  2HMM A;  2YFL A;  1P84 E;  2NVF A;  2NUK A;  1PPJ E;  3TGU E;  1SQB E;  2NWF A;  3AZC A;  3L72 E;  3VMH D;  4NB8 D;  4HKV A;  4QUP A;  2GBX A;  2QPZ A;  1BCC E;  4P1C H;  3VCA A;  5AEW A;  4HM3 A;  3GKE A;  3VCP A;  2DE7 D;  1UUW A;  3H1I E;  1VCK A;  1O7G A;  3L74 E;  2YFI A;  4P1B H;  4PD4 E;  1BE3 E;  1EG9 A;  1O7M A;  3H1J E;  4QDF A;  1WQL A;  2YFJ A;  1NU1 E;  2E75 D;  3CWB E;  2NVG A;  2YIU C;  2QJY C;  1JM1 A;  4AIV A;  4QCK A;  2BCC E;  3FOU A;  5AEU A;  1O7H A;  2D2C D;  4PV1 D;  4QUR A;  1SQP E;  1G8K B;  1FQT A;  2DE6 D;  3L70 E;  4EMJ B;  3CX5 E;  4QDC A;  4NBB D;  1KB9 E;  3L75 E;  2HMN A;  3VMG D;  5KLI C;  1SQX E;  2HMK A;  4HM6 A;  2BMO A;  1RIE A;  4NBC D;  2CKF A;  2E4P A;  4NBF D;  2Q3W A;  3GTS A;  1NTK E;  1NYK A;  1VF5 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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