4NBBD

Carbazole- and oxygen-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbbD00
1L0NE 5KKZC 2GBXA 2QJPC 1BE3E 2NVGA 2GBWA 1O7PA 2DE7D 1SQQE 4PV1D 2E4PA 2XSHA 3CX5E 2BCCE 1JM1A 3FOUA 4H44D 2Q3WA 4HM4A 4NBED 4HKVA 1NDOA 2E4QA 2HMKA 1O7WA 3H1HE 4QUQA 3D89A 2YFLA 2QPZA 3GL0A 2D2CD 3L73E 4HM6A 1SQXE 2NWFA 2NUMA 3GTEA 2E74D 4P1BH 1SQBE 4HM3A 5HL4A 4HM8A 3GB4A 1UUVA 1VF5D 4HJLA 2JO6A 2E76D 2YIUC 3L72E 3GOBA 3TGUE 1NYKA 2B1XA 2ZYLA 3VMHD 4NBAD 1NTZE 3H1IE 2B24A 2ZT9D 4QDDA 3VCAA 3GZYA 4PD4E 5KLVE 1KYOE 3C0DA 2QJYC 4H13D 4HM2A 1KB9E 3L74E 1O7HA 2YFJA 1FQTA 1O7MA 4H0LD 5CXMA 4QDFA 3N0QA 4AIVA 2E75D 4QDFB 2NVEA 2NVFA 3L70E 3VMGD 3VMID 3GCEA 1NU1E 2HMOA 2HMLA 1ZRTE 4EMJB 3VCPA 3GL2A 3AZCA 1NTME 5KLIC 2BMOA 2YVJB 1VM9A 1L0LE 3L71E 4OGQD 3H1JE 2BMRA 3H1LE 2HMNA 1EG9A 2CKFA 3GKEA 2YFIA 1SQVE 4HM1A 4NBGD 2DE5D 1SQPE 1Q90C 1PPJE 4NBDD 2HMJA 4NBBD 4HM7A 3EN1A 2XR8A 3CWBE 4P1CH 4QUPA 4NBHD 3GZXA 3BCCE 2HMMA 1RIEA 2I7FA 1O7NA 5BOKA 4NB8D 1PP9E 1ULJA 3L75E 2XSOA 1ULIA 1SJGA 2QJKC 1EZVE 1P84E 1WQLA 2FYNC 4HM5A 2FYUE 1BCCE 2A06E 3EQQA 4QDCA 2NUKA 2XRXA 2BMQA 1O7GA 1G8KB 1VCKA 2DE6D 3H1KE 3GTSA 4NBCD 4U3FE 2IBZE 5AEWA 1UUWA 4AAYB 4HM0A 4NB9D 1NTKE 1G8JB 5AEUA 4QCKA 2JZAA 4QURA 3DQYA 4NBFD 1RFSA 3CXHE
chains in the Genus database with same CATH superfamily
1L0NE 5KKZC 2GBXA 2QJPC 1BE3E 2NVGA 2GBWA 1O7PA 2DE7D 1SQQE 4PV1D 2E4PA 2XSHA 3CX5E 2BCCE 1JM1A 3FOUA 4H44D 2Q3WA 4HM4A 4NBED 4HKVA 1NDOA 2E4QA 2HMKA 1O7WA 3H1HE 4QUQA 3D89A 2YFLA 2QPZA 3GL0A 2D2CD 3L73E 4HM6A 1SQXE 2NWFA 2NUMA 3GTEA 2E74D 4P1BH 1SQBE 4HM3A 5HL4A 4HM8A 3GB4A 1UUVA 1VF5D 4HJLA 2JO6A 2E76D 2YIUC 3L72E 3GOBA 3TGUE 1NYKA 2B1XA 2ZYLA 3VMHD 4NBAD 1NTZE 3H1IE 2B24A 2ZT9D 4QDDA 3VCAA 3GZYA 4PD4E 5KLVE 1KYOE 3C0DA 2QJYC 4H13D 4HM2A 1KB9E 3L74E 1O7HA 2YFJA 1FQTA 1O7MA 4H0LD 5CXMA 4QDFA 3N0QA 4AIVA 2E75D 4QDFB 2NVEA 2NVFA 3L70E 3VMGD 3VMID 3GCEA 1NU1E 2HMOA 2HMLA 1ZRTE 4EMJB 3VCPA 3GL2A 3AZCA 1NTME 5KLIC 2BMOA 2YVJB 1VM9A 1L0LE 3L71E 4OGQD 3H1JE 2BMRA 3H1LE 2HMNA 1EG9A 2CKFA 3GKEA 2YFIA 1SQVE 4HM1A 4NBGD 2DE5D 1SQPE 1Q90C 1PPJE 4NBDD 2HMJA 4NBBD 4HM7A 3EN1A 2XR8A 3CWBE 4P1CH 4QUPA 4NBHD 3GZXA 3BCCE 2HMMA 1RIEA 2I7FA 1O7NA 5BOKA 4NB8D 1PP9E 1ULJA 3L75E 2XSOA 1ULIA 1SJGA 2QJKC 1EZVE 1P84E 1WQLA 2FYNC 4HM5A 2FYUE 1BCCE 2A06E 3EQQA 4QDCA 2NUKA 2XRXA 2BMQA 1O7GA 1G8KB 1VCKA 2DE6D 3H1KE 3GTSA 4NBCD 4U3FE 2IBZE 5AEWA 1UUWA 4AAYB 4HM0A 4NB9D 1NTKE 1G8JB 5AEUA 4QCKA 2JZAA 4QURA 3DQYA 4NBFD 1RFSA 3CXHE
chains in the Genus database with same CATH topology
1L0NE 5KKZC 2GBXA 2QJPC 1BE3E 2NVGA 2GBWA 1O7PA 2DE7D 1SQQE 4PV1D 2E4PA 2XSHA 3CX5E 2BCCE 1JM1A 3FOUA 4H44D 2Q3WA 4HM4A 4NBED 4HKVA 1NDOA 2E4QA 2HMKA 1O7WA 3H1HE 4QUQA 3D89A 2YFLA 2QPZA 3GL0A 2D2CD 3L73E 4HM6A 1SQXE 2NWFA 2NUMA 3GTEA 2E74D 4P1BH 1SQBE 4HM3A 5HL4A 4HM8A 3GB4A 1UUVA 1VF5D 4HJLA 2JO6A 2E76D 2YIUC 3L72E 3GOBA 3TGUE 1NYKA 2B1XA 2ZYLA 3VMHD 4NBAD 1NTZE 3H1IE 2B24A 2ZT9D 4QDDA 3VCAA 3GZYA 4PD4E 5KLVE 1KYOE 3C0DA 2QJYC 4H13D 4HM2A 1KB9E 3L74E 1O7HA 2YFJA 1FQTA 1O7MA 4H0LD 5CXMA 4QDFA 3N0QA 4AIVA 2E75D 4QDFB 2NVEA 2NVFA 3L70E 3VMGD 3VMID 3GCEA 1NU1E 2HMOA 2HMLA 1ZRTE 4EMJB 3VCPA 3GL2A 3AZCA 1NTME 5KLIC 2BMOA 2YVJB 1VM9A 1L0LE 3L71E 4OGQD 3H1JE 2BMRA 3H1LE 2HMNA 1EG9A 2CKFA 3GKEA 2YFIA 1SQVE 4HM1A 4NBGD 2DE5D 1SQPE 1Q90C 1PPJE 4NBDD 2HMJA 4NBBD 4HM7A 3EN1A 2XR8A 3CWBE 4P1CH 4QUPA 4NBHD 3GZXA 3BCCE 2HMMA 1RIEA 2I7FA 1O7NA 5BOKA 4NB8D 1PP9E 1ULJA 3L75E 2XSOA 1ULIA 1SJGA 2QJKC 1EZVE 1P84E 1WQLA 2FYNC 4HM5A 2FYUE 1BCCE 2A06E 3EQQA 4QDCA 2NUKA 2XRXA 2BMQA 1O7GA 1G8KB 1VCKA 2DE6D 3H1KE 3GTSA 4NBCD 4U3FE 2IBZE 5AEWA 1UUWA 4AAYB 4HM0A 4NB9D 1NTKE 1G8JB 5AEUA 4QCKA 2JZAA 4QURA 3DQYA 4NBFD 1RFSA 3CXHE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L0N E;  5KKZ C;  2GBX A;  2QJP C;  1BE3 E;  2NVG A;  2GBW A;  1O7P A;  2DE7 D;  1SQQ E;  4PV1 D;  2E4P A;  2XSH A;  3CX5 E;  2BCC E;  1JM1 A;  3FOU A;  4H44 D;  2Q3W A;  4HM4 A;  4NBE D;  4HKV A;  1NDO A;  2E4Q A;  2HMK A;  1O7W A;  3H1H E;  4QUQ A;  3D89 A;  2YFL A;  2QPZ A;  3GL0 A;  2D2C D;  3L73 E;  4HM6 A;  1SQX E;  2NWF A;  2NUM A;  3GTE A;  2E74 D;  4P1B H;  1SQB E;  4HM3 A;  5HL4 A;  4HM8 A;  3GB4 A;  1UUV A;  1VF5 D;  4HJL A;  2JO6 A;  2E76 D;  2YIU C;  3L72 E;  3GOB A;  3TGU E;  1NYK A;  2B1X A;  2ZYL A;  3VMH D;  4NBA D;  1NTZ E;  3H1I E;  2B24 A;  2ZT9 D;  4QDD A;  3VCA A;  3GZY A;  4PD4 E;  5KLV E;  1KYO E;  3C0D A;  2QJY C;  4H13 D;  4HM2 A;  1KB9 E;  3L74 E;  1O7H A;  2YFJ A;  1FQT A;  1O7M A;  4H0L D;  5CXM A;  4QDF A;  3N0Q A;  4AIV A;  2E75 D;  4QDF B;  2NVE A;  2NVF A;  3L70 E;  3VMG D;  3VMI D;  3GCE A;  1NU1 E;  2HMO A;  2HML A;  1ZRT E;  4EMJ B;  3VCP A;  3GL2 A;  3AZC A;  1NTM E;  5KLI C;  2BMO A;  2YVJ B;  1VM9 A;  1L0L E;  3L71 E;  4OGQ D;  3H1J E;  2BMR A;  3H1L E;  2HMN A;  1EG9 A;  2CKF A;  3GKE A;  2YFI A;  1SQV E;  4HM1 A;  4NBG D;  2DE5 D;  1SQP E;  1Q90 C;  1PPJ E;  4NBD D;  2HMJ A;  4NBB D;  4HM7 A;  3EN1 A;  2XR8 A;  3CWB E;  4P1C H;  4QUP A;  4NBH D;  3GZX A;  3BCC E;  2HMM A;  1RIE A;  2I7F A;  1O7N A;  5BOK A;  4NB8 D;  1PP9 E;  1ULJ A;  3L75 E;  2XSO A;  1ULI A;  1SJG A;  2QJK C;  1EZV E;  1P84 E;  1WQL A;  2FYN C;  4HM5 A;  2FYU E;  1BCC E;  2A06 E;  3EQQ A;  4QDC A;  2NUK A;  2XRX A;  2BMQ A;  1O7G A;  1G8K B;  1VCK A;  2DE6 D;  3H1K E;  3GTS A;  4NBC D;  4U3F E;  2IBZ E;  5AEW A;  1UUW A;  4AAY B;  4HM0 A;  4NB9 D;  1NTK E;  1G8J B;  5AEU A;  4QCK A;  2JZA A;  4QUR A;  3DQY A;  4NBF D;  1RFS A;  3CXH E; 
#chains in the Genus database with same CATH topology
 1L0N E;  5KKZ C;  2GBX A;  2QJP C;  1BE3 E;  2NVG A;  2GBW A;  1O7P A;  2DE7 D;  1SQQ E;  4PV1 D;  2E4P A;  2XSH A;  3CX5 E;  2BCC E;  1JM1 A;  3FOU A;  4H44 D;  2Q3W A;  4HM4 A;  4NBE D;  4HKV A;  1NDO A;  2E4Q A;  2HMK A;  1O7W A;  3H1H E;  4QUQ A;  3D89 A;  2YFL A;  2QPZ A;  3GL0 A;  2D2C D;  3L73 E;  4HM6 A;  1SQX E;  2NWF A;  2NUM A;  3GTE A;  2E74 D;  4P1B H;  1SQB E;  4HM3 A;  5HL4 A;  4HM8 A;  3GB4 A;  1UUV A;  1VF5 D;  4HJL A;  2JO6 A;  2E76 D;  2YIU C;  3L72 E;  3GOB A;  3TGU E;  1NYK A;  2B1X A;  2ZYL A;  3VMH D;  4NBA D;  1NTZ E;  3H1I E;  2B24 A;  2ZT9 D;  4QDD A;  3VCA A;  3GZY A;  4PD4 E;  5KLV E;  1KYO E;  3C0D A;  2QJY C;  4H13 D;  4HM2 A;  1KB9 E;  3L74 E;  1O7H A;  2YFJ A;  1FQT A;  1O7M A;  4H0L D;  5CXM A;  4QDF A;  3N0Q A;  4AIV A;  2E75 D;  4QDF B;  2NVE A;  2NVF A;  3L70 E;  3VMG D;  3VMI D;  3GCE A;  1NU1 E;  2HMO A;  2HML A;  1ZRT E;  4EMJ B;  3VCP A;  3GL2 A;  3AZC A;  1NTM E;  5KLI C;  2BMO A;  2YVJ B;  1VM9 A;  1L0L E;  3L71 E;  4OGQ D;  3H1J E;  2BMR A;  3H1L E;  2HMN A;  1EG9 A;  2CKF A;  3GKE A;  2YFI A;  1SQV E;  4HM1 A;  4NBG D;  2DE5 D;  1SQP E;  1Q90 C;  1PPJ E;  4NBD D;  2HMJ A;  4NBB D;  4HM7 A;  3EN1 A;  2XR8 A;  3CWB E;  4P1C H;  4QUP A;  4NBH D;  3GZX A;  3BCC E;  2HMM A;  1RIE A;  2I7F A;  1O7N A;  5BOK A;  4NB8 D;  1PP9 E;  1ULJ A;  3L75 E;  2XSO A;  1ULI A;  1SJG A;  2QJK C;  1EZV E;  1P84 E;  1WQL A;  2FYN C;  4HM5 A;  2FYU E;  1BCC E;  2A06 E;  3EQQ A;  4QDC A;  2NUK A;  2XRX A;  2BMQ A;  1O7G A;  1G8K B;  1VCK A;  2DE6 D;  3H1K E;  3GTS A;  4NBC D;  4U3F E;  2IBZ E;  5AEW A;  1UUW A;  4AAY B;  4HM0 A;  4NB9 D;  1NTK E;  1G8J B;  5AEU A;  4QCK A;  2JZA A;  4QUR A;  3DQY A;  4NBF D;  1RFS A;  3CXH E; 
#chains in the Genus database with same CATH homology
 1L0N E;  5KKZ C;  2GBX A;  2QJP C;  1BE3 E;  2NVG A;  2GBW A;  1O7P A;  2DE7 D;  1SQQ E;  4PV1 D;  2E4P A;  2XSH A;  3CX5 E;  2BCC E;  1JM1 A;  3FOU A;  4H44 D;  2Q3W A;  4HM4 A;  4NBE D;  4HKV A;  1NDO A;  2E4Q A;  2HMK A;  1O7W A;  3H1H E;  4QUQ A;  3D89 A;  2YFL A;  2QPZ A;  3GL0 A;  2D2C D;  3L73 E;  4HM6 A;  1SQX E;  2NWF A;  2NUM A;  3GTE A;  2E74 D;  4P1B H;  1SQB E;  4HM3 A;  5HL4 A;  4HM8 A;  3GB4 A;  1UUV A;  1VF5 D;  4HJL A;  2JO6 A;  2E76 D;  2YIU C;  3L72 E;  3GOB A;  3TGU E;  1NYK A;  2B1X A;  2ZYL A;  3VMH D;  4NBA D;  1NTZ E;  3H1I E;  2B24 A;  2ZT9 D;  4QDD A;  3VCA A;  3GZY A;  4PD4 E;  5KLV E;  1KYO E;  3C0D A;  2QJY C;  4H13 D;  4HM2 A;  1KB9 E;  3L74 E;  1O7H A;  2YFJ A;  1FQT A;  1O7M A;  4H0L D;  5CXM A;  4QDF A;  3N0Q A;  4AIV A;  2E75 D;  4QDF B;  2NVE A;  2NVF A;  3L70 E;  3VMG D;  3VMI D;  3GCE A;  1NU1 E;  2HMO A;  2HML A;  1ZRT E;  4EMJ B;  3VCP A;  3GL2 A;  3AZC A;  1NTM E;  5KLI C;  2BMO A;  2YVJ B;  1VM9 A;  1L0L E;  3L71 E;  4OGQ D;  3H1J E;  2BMR A;  3H1L E;  2HMN A;  1EG9 A;  2CKF A;  3GKE A;  2YFI A;  1SQV E;  4HM1 A;  4NBG D;  2DE5 D;  1SQP E;  1Q90 C;  1PPJ E;  4NBD D;  2HMJ A;  4NBB D;  4HM7 A;  3EN1 A;  2XR8 A;  3CWB E;  4P1C H;  4QUP A;  4NBH D;  3GZX A;  3BCC E;  2HMM A;  1RIE A;  2I7F A;  1O7N A;  5BOK A;  4NB8 D;  1PP9 E;  1ULJ A;  3L75 E;  2XSO A;  1ULI A;  1SJG A;  2QJK C;  1EZV E;  1P84 E;  1WQL A;  2FYN C;  4HM5 A;  2FYU E;  1BCC E;  2A06 E;  3EQQ A;  4QDC A;  2NUK A;  2XRX A;  2BMQ A;  1O7G A;  1G8K B;  1VCK A;  2DE6 D;  3H1K E;  3GTS A;  4NBC D;  4U3F E;  2IBZ E;  5AEW A;  1UUW A;  4AAY B;  4HM0 A;  4NB9 D;  1NTK E;  1G8J B;  5AEU A;  4QCK A;  2JZA A;  4QUR A;  3DQY A;  4NBF D;  1RFS A;  3CXH E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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