4NBBD

Carbazole- and oxygen-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbbD00
3GL2A 1O7GA 4HM8A 2HMNA 2FYNC 2E75D 2HMMA 3L74E 4NBGD 2CKFA 2YFLA 4AIVA 2QJPC 1BCCE 1ULIA 1VF5D 5KKZC 3H1KE 2IBZE 4U3FE 2YFJA 3VMID 1VM9A 5KLIC 2BMQA 3GOBA 4NBHD 4QDFA 2D2CD 3AZCA 4HM5A 3H1HE 2JO6A 2HMOA 3GKEA 1P84E 1EG9A 1L0NE 2XSHA 4P1CH 5AEUA 2NVEA 4QUQA 4EMJB 3GTEA 2E76D 4HM2A 1FQTA 2FYUE 2E74D 1UUVA 3EN1A 2DE6D 2GBXA 2I7FA 3H1JE 4PD4E 1KB9E 2Q3WA 1SJGA 1SQQE 1G8KB 3GCEA 4HKVA 4P1BH 4QURA 1SQXE 1ULJA 1NTKE 2E4QA 3CWBE 2B1XA 2BMOA 3VCPA 1PPJE 5KLVE 1KYOE 2E4PA 2GBWA 2NUMA 2QPZA 3GZYA 4QDDA 3VMGD 4PV1D 3GB4A 2YVJB 2ZYLA 2A06E 2XR8A 2ZT9D 1L0LE 1VCKA 4HM3A 2XRXA 2XSOA 2YFIA 3VCAA 3FOUA 3D89A 5AEWA 3GL0A 2BCCE 3N0QA 4H13D 3TGUE 1EZVE 4HM4A 2NWFA 5CXMA 4NBBD 1NDOA 4AAYB 4QDFB 2QJKC 3BCCE 1O7WA 4QDCA 2YIUC 3VMHD 3GTSA 1SQBE 4NBED 1RFSA 1RIEA 2DE5D 1Q90C 3DQYA 1O7NA 2B24A 4H0LD 1ZRTE 1O7MA 4NBCD 4HJLA 3C0DA 2QJYC 4HM7A 2HMLA 4QUPA 1SQPE 1SQVE 1UUWA 4NBFD 2BMRA 1G8JB 3EQQA 3H1IE 4NB9D 1NU1E 4HM6A 1O7HA 4NBAD 1PP9E 3L73E 5BOKA 2JZAA 3L72E 4NB8D 4OGQD 4HM0A 5HL4A 4QCKA 1WQLA 4H44D 4NBDD 2NUKA 2NVFA 2HMKA 1JM1A 1BE3E 1NTZE 3GZXA 1NYKA 2DE7D 2NVGA 3CXHE 3H1LE 2HMJA 3L71E 3L70E 4HM1A 1O7PA 3L75E 1NTME 3CX5E
chains in the Genus database with same CATH superfamily
3GL2A 1O7GA 4HM8A 2HMNA 2FYNC 2E75D 2HMMA 3L74E 4NBGD 2CKFA 2YFLA 4AIVA 2QJPC 1BCCE 1ULIA 1VF5D 5KKZC 3H1KE 2IBZE 4U3FE 2YFJA 3VMID 1VM9A 5KLIC 2BMQA 3GOBA 4NBHD 4QDFA 2D2CD 3AZCA 4HM5A 3H1HE 2JO6A 2HMOA 3GKEA 1P84E 1EG9A 1L0NE 2XSHA 4P1CH 5AEUA 2NVEA 4QUQA 4EMJB 3GTEA 2E76D 4HM2A 1FQTA 2FYUE 2E74D 1UUVA 3EN1A 2DE6D 2GBXA 2I7FA 3H1JE 4PD4E 1KB9E 2Q3WA 1SJGA 1SQQE 1G8KB 3GCEA 4HKVA 4P1BH 4QURA 1SQXE 1ULJA 1NTKE 2E4QA 3CWBE 2B1XA 2BMOA 3VCPA 1PPJE 5KLVE 1KYOE 2E4PA 2GBWA 2NUMA 2QPZA 3GZYA 4QDDA 3VMGD 4PV1D 3GB4A 2YVJB 2ZYLA 2A06E 2XR8A 2ZT9D 1L0LE 1VCKA 4HM3A 2XRXA 2XSOA 2YFIA 3VCAA 3FOUA 3D89A 5AEWA 3GL0A 2BCCE 3N0QA 4H13D 3TGUE 1EZVE 4HM4A 2NWFA 5CXMA 4NBBD 1NDOA 4AAYB 4QDFB 2QJKC 3BCCE 1O7WA 4QDCA 2YIUC 3VMHD 3GTSA 1SQBE 4NBED 1RFSA 1RIEA 2DE5D 1Q90C 3DQYA 1O7NA 2B24A 4H0LD 1ZRTE 1O7MA 4NBCD 4HJLA 3C0DA 2QJYC 4HM7A 2HMLA 4QUPA 1SQPE 1SQVE 1UUWA 4NBFD 2BMRA 1G8JB 3EQQA 3H1IE 4NB9D 1NU1E 4HM6A 1O7HA 4NBAD 1PP9E 3L73E 5BOKA 2JZAA 3L72E 4NB8D 4OGQD 4HM0A 5HL4A 4QCKA 1WQLA 4H44D 4NBDD 2NUKA 2NVFA 2HMKA 1JM1A 1BE3E 1NTZE 3GZXA 1NYKA 2DE7D 2NVGA 3CXHE 3H1LE 2HMJA 3L71E 3L70E 4HM1A 1O7PA 3L75E 1NTME 3CX5E
chains in the Genus database with same CATH topology
3GL2A 1O7GA 4HM8A 2HMNA 2FYNC 2E75D 2HMMA 3L74E 4NBGD 2CKFA 2YFLA 4AIVA 2QJPC 1BCCE 1ULIA 1VF5D 5KKZC 3H1KE 2IBZE 4U3FE 2YFJA 3VMID 1VM9A 5KLIC 2BMQA 3GOBA 4NBHD 4QDFA 2D2CD 3AZCA 4HM5A 3H1HE 2JO6A 2HMOA 3GKEA 1P84E 1EG9A 1L0NE 2XSHA 4P1CH 5AEUA 2NVEA 4QUQA 4EMJB 3GTEA 2E76D 4HM2A 1FQTA 2FYUE 2E74D 1UUVA 3EN1A 2DE6D 2GBXA 2I7FA 3H1JE 4PD4E 1KB9E 2Q3WA 1SJGA 1SQQE 1G8KB 3GCEA 4HKVA 4P1BH 4QURA 1SQXE 1ULJA 1NTKE 2E4QA 3CWBE 2B1XA 2BMOA 3VCPA 1PPJE 5KLVE 1KYOE 2E4PA 2GBWA 2NUMA 2QPZA 3GZYA 4QDDA 3VMGD 4PV1D 3GB4A 2YVJB 2ZYLA 2A06E 2XR8A 2ZT9D 1L0LE 1VCKA 4HM3A 2XRXA 2XSOA 2YFIA 3VCAA 3FOUA 3D89A 5AEWA 3GL0A 2BCCE 3N0QA 4H13D 3TGUE 1EZVE 4HM4A 2NWFA 5CXMA 4NBBD 1NDOA 4AAYB 4QDFB 2QJKC 3BCCE 1O7WA 4QDCA 2YIUC 3VMHD 3GTSA 1SQBE 4NBED 1RFSA 1RIEA 2DE5D 1Q90C 3DQYA 1O7NA 2B24A 4H0LD 1ZRTE 1O7MA 4NBCD 4HJLA 3C0DA 2QJYC 4HM7A 2HMLA 4QUPA 1SQPE 1SQVE 1UUWA 4NBFD 2BMRA 1G8JB 3EQQA 3H1IE 4NB9D 1NU1E 4HM6A 1O7HA 4NBAD 1PP9E 3L73E 5BOKA 2JZAA 3L72E 4NB8D 4OGQD 4HM0A 5HL4A 4QCKA 1WQLA 4H44D 4NBDD 2NUKA 2NVFA 2HMKA 1JM1A 1BE3E 1NTZE 3GZXA 1NYKA 2DE7D 2NVGA 3CXHE 3H1LE 2HMJA 3L71E 3L70E 4HM1A 1O7PA 3L75E 1NTME 3CX5E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GL2 A;  1O7G A;  4HM8 A;  2HMN A;  2FYN C;  2E75 D;  2HMM A;  3L74 E;  4NBG D;  2CKF A;  2YFL A;  4AIV A;  2QJP C;  1BCC E;  1ULI A;  1VF5 D;  5KKZ C;  3H1K E;  2IBZ E;  4U3F E;  2YFJ A;  3VMI D;  1VM9 A;  5KLI C;  2BMQ A;  3GOB A;  4NBH D;  4QDF A;  2D2C D;  3AZC A;  4HM5 A;  3H1H E;  2JO6 A;  2HMO A;  3GKE A;  1P84 E;  1EG9 A;  1L0N E;  2XSH A;  4P1C H;  5AEU A;  2NVE A;  4QUQ A;  4EMJ B;  3GTE A;  2E76 D;  4HM2 A;  1FQT A;  2FYU E;  2E74 D;  1UUV A;  3EN1 A;  2DE6 D;  2GBX A;  2I7F A;  3H1J E;  4PD4 E;  1KB9 E;  2Q3W A;  1SJG A;  1SQQ E;  1G8K B;  3GCE A;  4HKV A;  4P1B H;  4QUR A;  1SQX E;  1ULJ A;  1NTK E;  2E4Q A;  3CWB E;  2B1X A;  2BMO A;  3VCP A;  1PPJ E;  5KLV E;  1KYO E;  2E4P A;  2GBW A;  2NUM A;  2QPZ A;  3GZY A;  4QDD A;  3VMG D;  4PV1 D;  3GB4 A;  2YVJ B;  2ZYL A;  2A06 E;  2XR8 A;  2ZT9 D;  1L0L E;  1VCK A;  4HM3 A;  2XRX A;  2XSO A;  2YFI A;  3VCA A;  3FOU A;  3D89 A;  5AEW A;  3GL0 A;  2BCC E;  3N0Q A;  4H13 D;  3TGU E;  1EZV E;  4HM4 A;  2NWF A;  5CXM A;  4NBB D;  1NDO A;  4AAY B;  4QDF B;  2QJK C;  3BCC E;  1O7W A;  4QDC A;  2YIU C;  3VMH D;  3GTS A;  1SQB E;  4NBE D;  1RFS A;  1RIE A;  2DE5 D;  1Q90 C;  3DQY A;  1O7N A;  2B24 A;  4H0L D;  1ZRT E;  1O7M A;  4NBC D;  4HJL A;  3C0D A;  2QJY C;  4HM7 A;  2HML A;  4QUP A;  1SQP E;  1SQV E;  1UUW A;  4NBF D;  2BMR A;  1G8J B;  3EQQ A;  3H1I E;  4NB9 D;  1NU1 E;  4HM6 A;  1O7H A;  4NBA D;  1PP9 E;  3L73 E;  5BOK A;  2JZA A;  3L72 E;  4NB8 D;  4OGQ D;  4HM0 A;  5HL4 A;  4QCK A;  1WQL A;  4H44 D;  4NBD D;  2NUK A;  2NVF A;  2HMK A;  1JM1 A;  1BE3 E;  1NTZ E;  3GZX A;  1NYK A;  2DE7 D;  2NVG A;  3CXH E;  3H1L E;  2HMJ A;  3L71 E;  3L70 E;  4HM1 A;  1O7P A;  3L75 E;  1NTM E;  3CX5 E; 
#chains in the Genus database with same CATH topology
 3GL2 A;  1O7G A;  4HM8 A;  2HMN A;  2FYN C;  2E75 D;  2HMM A;  3L74 E;  4NBG D;  2CKF A;  2YFL A;  4AIV A;  2QJP C;  1BCC E;  1ULI A;  1VF5 D;  5KKZ C;  3H1K E;  2IBZ E;  4U3F E;  2YFJ A;  3VMI D;  1VM9 A;  5KLI C;  2BMQ A;  3GOB A;  4NBH D;  4QDF A;  2D2C D;  3AZC A;  4HM5 A;  3H1H E;  2JO6 A;  2HMO A;  3GKE A;  1P84 E;  1EG9 A;  1L0N E;  2XSH A;  4P1C H;  5AEU A;  2NVE A;  4QUQ A;  4EMJ B;  3GTE A;  2E76 D;  4HM2 A;  1FQT A;  2FYU E;  2E74 D;  1UUV A;  3EN1 A;  2DE6 D;  2GBX A;  2I7F A;  3H1J E;  4PD4 E;  1KB9 E;  2Q3W A;  1SJG A;  1SQQ E;  1G8K B;  3GCE A;  4HKV A;  4P1B H;  4QUR A;  1SQX E;  1ULJ A;  1NTK E;  2E4Q A;  3CWB E;  2B1X A;  2BMO A;  3VCP A;  1PPJ E;  5KLV E;  1KYO E;  2E4P A;  2GBW A;  2NUM A;  2QPZ A;  3GZY A;  4QDD A;  3VMG D;  4PV1 D;  3GB4 A;  2YVJ B;  2ZYL A;  2A06 E;  2XR8 A;  2ZT9 D;  1L0L E;  1VCK A;  4HM3 A;  2XRX A;  2XSO A;  2YFI A;  3VCA A;  3FOU A;  3D89 A;  5AEW A;  3GL0 A;  2BCC E;  3N0Q A;  4H13 D;  3TGU E;  1EZV E;  4HM4 A;  2NWF A;  5CXM A;  4NBB D;  1NDO A;  4AAY B;  4QDF B;  2QJK C;  3BCC E;  1O7W A;  4QDC A;  2YIU C;  3VMH D;  3GTS A;  1SQB E;  4NBE D;  1RFS A;  1RIE A;  2DE5 D;  1Q90 C;  3DQY A;  1O7N A;  2B24 A;  4H0L D;  1ZRT E;  1O7M A;  4NBC D;  4HJL A;  3C0D A;  2QJY C;  4HM7 A;  2HML A;  4QUP A;  1SQP E;  1SQV E;  1UUW A;  4NBF D;  2BMR A;  1G8J B;  3EQQ A;  3H1I E;  4NB9 D;  1NU1 E;  4HM6 A;  1O7H A;  4NBA D;  1PP9 E;  3L73 E;  5BOK A;  2JZA A;  3L72 E;  4NB8 D;  4OGQ D;  4HM0 A;  5HL4 A;  4QCK A;  1WQL A;  4H44 D;  4NBD D;  2NUK A;  2NVF A;  2HMK A;  1JM1 A;  1BE3 E;  1NTZ E;  3GZX A;  1NYK A;  2DE7 D;  2NVG A;  3CXH E;  3H1L E;  2HMJ A;  3L71 E;  3L70 E;  4HM1 A;  1O7P A;  3L75 E;  1NTM E;  3CX5 E; 
#chains in the Genus database with same CATH homology
 3GL2 A;  1O7G A;  4HM8 A;  2HMN A;  2FYN C;  2E75 D;  2HMM A;  3L74 E;  4NBG D;  2CKF A;  2YFL A;  4AIV A;  2QJP C;  1BCC E;  1ULI A;  1VF5 D;  5KKZ C;  3H1K E;  2IBZ E;  4U3F E;  2YFJ A;  3VMI D;  1VM9 A;  5KLI C;  2BMQ A;  3GOB A;  4NBH D;  4QDF A;  2D2C D;  3AZC A;  4HM5 A;  3H1H E;  2JO6 A;  2HMO A;  3GKE A;  1P84 E;  1EG9 A;  1L0N E;  2XSH A;  4P1C H;  5AEU A;  2NVE A;  4QUQ A;  4EMJ B;  3GTE A;  2E76 D;  4HM2 A;  1FQT A;  2FYU E;  2E74 D;  1UUV A;  3EN1 A;  2DE6 D;  2GBX A;  2I7F A;  3H1J E;  4PD4 E;  1KB9 E;  2Q3W A;  1SJG A;  1SQQ E;  1G8K B;  3GCE A;  4HKV A;  4P1B H;  4QUR A;  1SQX E;  1ULJ A;  1NTK E;  2E4Q A;  3CWB E;  2B1X A;  2BMO A;  3VCP A;  1PPJ E;  5KLV E;  1KYO E;  2E4P A;  2GBW A;  2NUM A;  2QPZ A;  3GZY A;  4QDD A;  3VMG D;  4PV1 D;  3GB4 A;  2YVJ B;  2ZYL A;  2A06 E;  2XR8 A;  2ZT9 D;  1L0L E;  1VCK A;  4HM3 A;  2XRX A;  2XSO A;  2YFI A;  3VCA A;  3FOU A;  3D89 A;  5AEW A;  3GL0 A;  2BCC E;  3N0Q A;  4H13 D;  3TGU E;  1EZV E;  4HM4 A;  2NWF A;  5CXM A;  4NBB D;  1NDO A;  4AAY B;  4QDF B;  2QJK C;  3BCC E;  1O7W A;  4QDC A;  2YIU C;  3VMH D;  3GTS A;  1SQB E;  4NBE D;  1RFS A;  1RIE A;  2DE5 D;  1Q90 C;  3DQY A;  1O7N A;  2B24 A;  4H0L D;  1ZRT E;  1O7M A;  4NBC D;  4HJL A;  3C0D A;  2QJY C;  4HM7 A;  2HML A;  4QUP A;  1SQP E;  1SQV E;  1UUW A;  4NBF D;  2BMR A;  1G8J B;  3EQQ A;  3H1I E;  4NB9 D;  1NU1 E;  4HM6 A;  1O7H A;  4NBA D;  1PP9 E;  3L73 E;  5BOK A;  2JZA A;  3L72 E;  4NB8 D;  4OGQ D;  4HM0 A;  5HL4 A;  4QCK A;  1WQL A;  4H44 D;  4NBD D;  2NUK A;  2NVF A;  2HMK A;  1JM1 A;  1BE3 E;  1NTZ E;  3GZX A;  1NYK A;  2DE7 D;  2NVG A;  3CXH E;  3H1L E;  2HMJ A;  3L71 E;  3L70 E;  4HM1 A;  1O7P A;  3L75 E;  1NTM E;  3CX5 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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