4NBHD

Carbazole-bound oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Janthinobacterium
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
molecule keywords Terminal oxygenase component of carbazole
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbhD00
2QJPC 4NBGD 2BCCE 3GL2A 3EN1A 4HKVA 4NBHD 3GB4A 2HMJA 4QUPA 1KYOE 2XSOA 4H13D 3L73E 2JO6A 4QUQA 4HJLA 3L71E 5KKZC 1P84E 2NWFA 3L74E 4NBBD 1FQTA 3GTEA 4H0LD 2XSHA 1SJGA 1SQBE 1UUWA 3EQQA 4NB9D 2I7FA 1L0NE 4P1CH 5HL4A 4NBED 4QDDA 3GOBA 1VM9A 1NDOA 3L70E 2XR8A 4OGQD 2B24A 2HMMA 4AIVA 2NUMA 2NVFA 3L72E 1WQLA 1PP9E 3L75E 1Q90C 5KLIC 4QDCA 1NTKE 3VCAA 2CKFA 2E75D 4NBAD 2GBWA 3GTSA 5BOKA 5AEUA 1BCCE 1EZVE 2DE5D 4QDFB 2ZYLA 2NVGA 1UUVA 1BE3E 1RIEA 4HM6A 1G8JB 4NBDD 4QCKA 2BMQA 2E76D 5CXMA 2NUKA 1NYKA 1RFSA 3CX5E 2IBZE 2E74D 2ZT9D 4HM8A 4HM0A 3FOUA 3GL0A 1ZRTE 4U3FE 4NB8D 2DE6D 1O7NA 3H1JE 3H1IE 2QJYC 1O7PA 2HMNA 1VCKA 3BCCE 2Q3WA 1EG9A 4NBFD 1SQXE 4HM4A 1NTZE 2A06E 4HM5A 4QDFA 3D89A 1NTME 3GKEA 1O7WA 1ULIA 3C0DA 2QJKC 2B1XA 1NU1E 2NVEA 2YFJA 3H1HE 2YVJB 4PD4E 1O7MA 1ULJA 3GZXA 4QURA 3H1KE 4HM2A 4AAYB 1JM1A 1SQVE 2E4PA 3VMID 2YFLA 2HMOA 2BMOA 2FYNC 4HM7A 1SQQE 4PV1D 2BMRA 2GBXA 3CWBE 4NBCD 1KB9E 3N0QA 1VF5D 3H1LE 3VMHD 3VMGD 3AZCA 4HM1A 5KLVE 1G8KB 4H44D 1PPJE 2E4QA 2HMKA 2D2CD 2FYUE 2HMLA 3DQYA 1O7HA 3CXHE 2DE7D 1O7GA 3GZYA 5AEWA 2YIUC 1L0LE 4HM3A 4P1BH 3TGUE 2QPZA 3VCPA 2YFIA 1SQPE 3GCEA 2XRXA 2JZAA 4EMJB
chains in the Genus database with same CATH superfamily
2QJPC 4NBGD 2BCCE 3GL2A 3EN1A 4HKVA 4NBHD 3GB4A 2HMJA 4QUPA 1KYOE 2XSOA 4H13D 3L73E 2JO6A 4QUQA 4HJLA 3L71E 5KKZC 1P84E 2NWFA 3L74E 4NBBD 1FQTA 3GTEA 4H0LD 2XSHA 1SJGA 1SQBE 1UUWA 3EQQA 4NB9D 2I7FA 1L0NE 4P1CH 5HL4A 4NBED 4QDDA 3GOBA 1VM9A 1NDOA 3L70E 2XR8A 4OGQD 2B24A 2HMMA 4AIVA 2NUMA 2NVFA 3L72E 1WQLA 1PP9E 3L75E 1Q90C 5KLIC 4QDCA 1NTKE 3VCAA 2CKFA 2E75D 4NBAD 2GBWA 3GTSA 5BOKA 5AEUA 1BCCE 1EZVE 2DE5D 4QDFB 2ZYLA 2NVGA 1UUVA 1BE3E 1RIEA 4HM6A 1G8JB 4NBDD 4QCKA 2BMQA 2E76D 5CXMA 2NUKA 1NYKA 1RFSA 3CX5E 2IBZE 2E74D 2ZT9D 4HM8A 4HM0A 3FOUA 3GL0A 1ZRTE 4U3FE 4NB8D 2DE6D 1O7NA 3H1JE 3H1IE 2QJYC 1O7PA 2HMNA 1VCKA 3BCCE 2Q3WA 1EG9A 4NBFD 1SQXE 4HM4A 1NTZE 2A06E 4HM5A 4QDFA 3D89A 1NTME 3GKEA 1O7WA 1ULIA 3C0DA 2QJKC 2B1XA 1NU1E 2NVEA 2YFJA 3H1HE 2YVJB 4PD4E 1O7MA 1ULJA 3GZXA 4QURA 3H1KE 4HM2A 4AAYB 1JM1A 1SQVE 2E4PA 3VMID 2YFLA 2HMOA 2BMOA 2FYNC 4HM7A 1SQQE 4PV1D 2BMRA 2GBXA 3CWBE 4NBCD 1KB9E 3N0QA 1VF5D 3H1LE 3VMHD 3VMGD 3AZCA 4HM1A 5KLVE 1G8KB 4H44D 1PPJE 2E4QA 2HMKA 2D2CD 2FYUE 2HMLA 3DQYA 1O7HA 3CXHE 2DE7D 1O7GA 3GZYA 5AEWA 2YIUC 1L0LE 4HM3A 4P1BH 3TGUE 2QPZA 3VCPA 2YFIA 1SQPE 3GCEA 2XRXA 2JZAA 4EMJB
chains in the Genus database with same CATH topology
2QJPC 4NBGD 2BCCE 3GL2A 3EN1A 4HKVA 4NBHD 3GB4A 2HMJA 4QUPA 1KYOE 2XSOA 4H13D 3L73E 2JO6A 4QUQA 4HJLA 3L71E 5KKZC 1P84E 2NWFA 3L74E 4NBBD 1FQTA 3GTEA 4H0LD 2XSHA 1SJGA 1SQBE 1UUWA 3EQQA 4NB9D 2I7FA 1L0NE 4P1CH 5HL4A 4NBED 4QDDA 3GOBA 1VM9A 1NDOA 3L70E 2XR8A 4OGQD 2B24A 2HMMA 4AIVA 2NUMA 2NVFA 3L72E 1WQLA 1PP9E 3L75E 1Q90C 5KLIC 4QDCA 1NTKE 3VCAA 2CKFA 2E75D 4NBAD 2GBWA 3GTSA 5BOKA 5AEUA 1BCCE 1EZVE 2DE5D 4QDFB 2ZYLA 2NVGA 1UUVA 1BE3E 1RIEA 4HM6A 1G8JB 4NBDD 4QCKA 2BMQA 2E76D 5CXMA 2NUKA 1NYKA 1RFSA 3CX5E 2IBZE 2E74D 2ZT9D 4HM8A 4HM0A 3FOUA 3GL0A 1ZRTE 4U3FE 4NB8D 2DE6D 1O7NA 3H1JE 3H1IE 2QJYC 1O7PA 2HMNA 1VCKA 3BCCE 2Q3WA 1EG9A 4NBFD 1SQXE 4HM4A 1NTZE 2A06E 4HM5A 4QDFA 3D89A 1NTME 3GKEA 1O7WA 1ULIA 3C0DA 2QJKC 2B1XA 1NU1E 2NVEA 2YFJA 3H1HE 2YVJB 4PD4E 1O7MA 1ULJA 3GZXA 4QURA 3H1KE 4HM2A 4AAYB 1JM1A 1SQVE 2E4PA 3VMID 2YFLA 2HMOA 2BMOA 2FYNC 4HM7A 1SQQE 4PV1D 2BMRA 2GBXA 3CWBE 4NBCD 1KB9E 3N0QA 1VF5D 3H1LE 3VMHD 3VMGD 3AZCA 4HM1A 5KLVE 1G8KB 4H44D 1PPJE 2E4QA 2HMKA 2D2CD 2FYUE 2HMLA 3DQYA 1O7HA 3CXHE 2DE7D 1O7GA 3GZYA 5AEWA 2YIUC 1L0LE 4HM3A 4P1BH 3TGUE 2QPZA 3VCPA 2YFIA 1SQPE 3GCEA 2XRXA 2JZAA 4EMJB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJP C;  4NBG D;  2BCC E;  3GL2 A;  3EN1 A;  4HKV A;  4NBH D;  3GB4 A;  2HMJ A;  4QUP A;  1KYO E;  2XSO A;  4H13 D;  3L73 E;  2JO6 A;  4QUQ A;  4HJL A;  3L71 E;  5KKZ C;  1P84 E;  2NWF A;  3L74 E;  4NBB D;  1FQT A;  3GTE A;  4H0L D;  2XSH A;  1SJG A;  1SQB E;  1UUW A;  3EQQ A;  4NB9 D;  2I7F A;  1L0N E;  4P1C H;  5HL4 A;  4NBE D;  4QDD A;  3GOB A;  1VM9 A;  1NDO A;  3L70 E;  2XR8 A;  4OGQ D;  2B24 A;  2HMM A;  4AIV A;  2NUM A;  2NVF A;  3L72 E;  1WQL A;  1PP9 E;  3L75 E;  1Q90 C;  5KLI C;  4QDC A;  1NTK E;  3VCA A;  2CKF A;  2E75 D;  4NBA D;  2GBW A;  3GTS A;  5BOK A;  5AEU A;  1BCC E;  1EZV E;  2DE5 D;  4QDF B;  2ZYL A;  2NVG A;  1UUV A;  1BE3 E;  1RIE A;  4HM6 A;  1G8J B;  4NBD D;  4QCK A;  2BMQ A;  2E76 D;  5CXM A;  2NUK A;  1NYK A;  1RFS A;  3CX5 E;  2IBZ E;  2E74 D;  2ZT9 D;  4HM8 A;  4HM0 A;  3FOU A;  3GL0 A;  1ZRT E;  4U3F E;  4NB8 D;  2DE6 D;  1O7N A;  3H1J E;  3H1I E;  2QJY C;  1O7P A;  2HMN A;  1VCK A;  3BCC E;  2Q3W A;  1EG9 A;  4NBF D;  1SQX E;  4HM4 A;  1NTZ E;  2A06 E;  4HM5 A;  4QDF A;  3D89 A;  1NTM E;  3GKE A;  1O7W A;  1ULI A;  3C0D A;  2QJK C;  2B1X A;  1NU1 E;  2NVE A;  2YFJ A;  3H1H E;  2YVJ B;  4PD4 E;  1O7M A;  1ULJ A;  3GZX A;  4QUR A;  3H1K E;  4HM2 A;  4AAY B;  1JM1 A;  1SQV E;  2E4P A;  3VMI D;  2YFL A;  2HMO A;  2BMO A;  2FYN C;  4HM7 A;  1SQQ E;  4PV1 D;  2BMR A;  2GBX A;  3CWB E;  4NBC D;  1KB9 E;  3N0Q A;  1VF5 D;  3H1L E;  3VMH D;  3VMG D;  3AZC A;  4HM1 A;  5KLV E;  1G8K B;  4H44 D;  1PPJ E;  2E4Q A;  2HMK A;  2D2C D;  2FYU E;  2HML A;  3DQY A;  1O7H A;  3CXH E;  2DE7 D;  1O7G A;  3GZY A;  5AEW A;  2YIU C;  1L0L E;  4HM3 A;  4P1B H;  3TGU E;  2QPZ A;  3VCP A;  2YFI A;  1SQP E;  3GCE A;  2XRX A;  2JZA A;  4EMJ B; 
#chains in the Genus database with same CATH topology
 2QJP C;  4NBG D;  2BCC E;  3GL2 A;  3EN1 A;  4HKV A;  4NBH D;  3GB4 A;  2HMJ A;  4QUP A;  1KYO E;  2XSO A;  4H13 D;  3L73 E;  2JO6 A;  4QUQ A;  4HJL A;  3L71 E;  5KKZ C;  1P84 E;  2NWF A;  3L74 E;  4NBB D;  1FQT A;  3GTE A;  4H0L D;  2XSH A;  1SJG A;  1SQB E;  1UUW A;  3EQQ A;  4NB9 D;  2I7F A;  1L0N E;  4P1C H;  5HL4 A;  4NBE D;  4QDD A;  3GOB A;  1VM9 A;  1NDO A;  3L70 E;  2XR8 A;  4OGQ D;  2B24 A;  2HMM A;  4AIV A;  2NUM A;  2NVF A;  3L72 E;  1WQL A;  1PP9 E;  3L75 E;  1Q90 C;  5KLI C;  4QDC A;  1NTK E;  3VCA A;  2CKF A;  2E75 D;  4NBA D;  2GBW A;  3GTS A;  5BOK A;  5AEU A;  1BCC E;  1EZV E;  2DE5 D;  4QDF B;  2ZYL A;  2NVG A;  1UUV A;  1BE3 E;  1RIE A;  4HM6 A;  1G8J B;  4NBD D;  4QCK A;  2BMQ A;  2E76 D;  5CXM A;  2NUK A;  1NYK A;  1RFS A;  3CX5 E;  2IBZ E;  2E74 D;  2ZT9 D;  4HM8 A;  4HM0 A;  3FOU A;  3GL0 A;  1ZRT E;  4U3F E;  4NB8 D;  2DE6 D;  1O7N A;  3H1J E;  3H1I E;  2QJY C;  1O7P A;  2HMN A;  1VCK A;  3BCC E;  2Q3W A;  1EG9 A;  4NBF D;  1SQX E;  4HM4 A;  1NTZ E;  2A06 E;  4HM5 A;  4QDF A;  3D89 A;  1NTM E;  3GKE A;  1O7W A;  1ULI A;  3C0D A;  2QJK C;  2B1X A;  1NU1 E;  2NVE A;  2YFJ A;  3H1H E;  2YVJ B;  4PD4 E;  1O7M A;  1ULJ A;  3GZX A;  4QUR A;  3H1K E;  4HM2 A;  4AAY B;  1JM1 A;  1SQV E;  2E4P A;  3VMI D;  2YFL A;  2HMO A;  2BMO A;  2FYN C;  4HM7 A;  1SQQ E;  4PV1 D;  2BMR A;  2GBX A;  3CWB E;  4NBC D;  1KB9 E;  3N0Q A;  1VF5 D;  3H1L E;  3VMH D;  3VMG D;  3AZC A;  4HM1 A;  5KLV E;  1G8K B;  4H44 D;  1PPJ E;  2E4Q A;  2HMK A;  2D2C D;  2FYU E;  2HML A;  3DQY A;  1O7H A;  3CXH E;  2DE7 D;  1O7G A;  3GZY A;  5AEW A;  2YIU C;  1L0L E;  4HM3 A;  4P1B H;  3TGU E;  2QPZ A;  3VCP A;  2YFI A;  1SQP E;  3GCE A;  2XRX A;  2JZA A;  4EMJ B; 
#chains in the Genus database with same CATH homology
 2QJP C;  4NBG D;  2BCC E;  3GL2 A;  3EN1 A;  4HKV A;  4NBH D;  3GB4 A;  2HMJ A;  4QUP A;  1KYO E;  2XSO A;  4H13 D;  3L73 E;  2JO6 A;  4QUQ A;  4HJL A;  3L71 E;  5KKZ C;  1P84 E;  2NWF A;  3L74 E;  4NBB D;  1FQT A;  3GTE A;  4H0L D;  2XSH A;  1SJG A;  1SQB E;  1UUW A;  3EQQ A;  4NB9 D;  2I7F A;  1L0N E;  4P1C H;  5HL4 A;  4NBE D;  4QDD A;  3GOB A;  1VM9 A;  1NDO A;  3L70 E;  2XR8 A;  4OGQ D;  2B24 A;  2HMM A;  4AIV A;  2NUM A;  2NVF A;  3L72 E;  1WQL A;  1PP9 E;  3L75 E;  1Q90 C;  5KLI C;  4QDC A;  1NTK E;  3VCA A;  2CKF A;  2E75 D;  4NBA D;  2GBW A;  3GTS A;  5BOK A;  5AEU A;  1BCC E;  1EZV E;  2DE5 D;  4QDF B;  2ZYL A;  2NVG A;  1UUV A;  1BE3 E;  1RIE A;  4HM6 A;  1G8J B;  4NBD D;  4QCK A;  2BMQ A;  2E76 D;  5CXM A;  2NUK A;  1NYK A;  1RFS A;  3CX5 E;  2IBZ E;  2E74 D;  2ZT9 D;  4HM8 A;  4HM0 A;  3FOU A;  3GL0 A;  1ZRT E;  4U3F E;  4NB8 D;  2DE6 D;  1O7N A;  3H1J E;  3H1I E;  2QJY C;  1O7P A;  2HMN A;  1VCK A;  3BCC E;  2Q3W A;  1EG9 A;  4NBF D;  1SQX E;  4HM4 A;  1NTZ E;  2A06 E;  4HM5 A;  4QDF A;  3D89 A;  1NTM E;  3GKE A;  1O7W A;  1ULI A;  3C0D A;  2QJK C;  2B1X A;  1NU1 E;  2NVE A;  2YFJ A;  3H1H E;  2YVJ B;  4PD4 E;  1O7M A;  1ULJ A;  3GZX A;  4QUR A;  3H1K E;  4HM2 A;  4AAY B;  1JM1 A;  1SQV E;  2E4P A;  3VMI D;  2YFL A;  2HMO A;  2BMO A;  2FYN C;  4HM7 A;  1SQQ E;  4PV1 D;  2BMR A;  2GBX A;  3CWB E;  4NBC D;  1KB9 E;  3N0Q A;  1VF5 D;  3H1L E;  3VMH D;  3VMG D;  3AZC A;  4HM1 A;  5KLV E;  1G8K B;  4H44 D;  1PPJ E;  2E4Q A;  2HMK A;  2D2C D;  2FYU E;  2HML A;  3DQY A;  1O7H A;  3CXH E;  2DE7 D;  1O7G A;  3GZY A;  5AEW A;  2YIU C;  1L0L E;  4HM3 A;  4P1B H;  3TGU E;  2QPZ A;  3VCP A;  2YFI A;  1SQP E;  3GCE A;  2XRX A;  2JZA A;  4EMJ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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