4NBHD

Carbazole-bound oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbhD00
4HJLA 4QDFA 4QDCA 4HM0A 4PD4E 2E76D 2JZAA 2XR8A 3VMHD 3GB4A 3GZXA 4PV1D 4NBAD 1UUWA 3GL0A 2NVEA 4NBCD 2E4QA 3GL2A 4AAYB 1O7PA 2IBZE 2FYUE 1O7GA 1EG9A 4HM8A 2GBWA 3CX5E 4P1CH 1O7WA 1Q90C 1SQVE 2Q3WA 3H1JE 3GCEA 2HMKA 1SQXE 1UUVA 1PPJE 2BMRA 4NBHD 4NBFD 3VCPA 2A06E 1NYKA 3GOBA 2GBXA 2HMLA 4QUQA 2HMOA 4NBED 4NBBD 1JM1A 4OGQD 2QPZA 5HL4A 4EMJB 1BE3E 3CXHE 2ZYLA 3L73E 3N0QA 4QURA 3VCAA 3H1IE 3L75E 2XSHA 2BMQA 3L72E 4P1BH 1ULIA 2E4PA 2YFLA 1G8JB 2NVGA 3H1LE 4QDDA 2I7FA 3AZCA 3H1HE 2YFJA 3GKEA 2NVFA 5KLIC 3EN1A 1NDOA 4NBGD 3L70E 1FQTA 2YVJB 2HMNA 1KB9E 2QJKC 3DQYA 4HM1A 3FOUA 3GZYA 1L0NE 3L74E 1SQPE 3D89A 4QUPA 4NBDD 3VMID 1VM9A 2D2CD 1NTME 2NUKA 4QDFB 4U3FE 2E74D 3C0DA 1RFSA 1VF5D 1PP9E 1VCKA 4QCKA 2QJPC 2FYNC 5AEUA 4HM5A 5KKZC 2JO6A 3GTSA 4H0LD 2YIUC 1BCCE 2YFIA 4HM4A 1O7MA 4NB8D 5KLVE 1O7NA 1SQBE 1SJGA 1RIEA 1SQQE 3L71E 2XRXA 1ZRTE 3GTEA 3CWBE 4HM3A 2QJYC 1WQLA 2XSOA 3VMGD 5AEWA 3BCCE 3EQQA 1O7HA 2E75D 1NTZE 2B24A 4HM7A 4H13D 2DE7D 5CXMA 5BOKA 4NB9D 4AIVA 4H44D 2DE6D 2HMMA 1NU1E 1EZVE 1P84E 1KYOE 1ULJA 2B1XA 4HM6A 1G8KB 3TGUE 4HKVA 1NTKE 2BMOA 2HMJA 2NWFA 3H1KE 2NUMA 1L0LE 2ZT9D 2BCCE 4HM2A 2DE5D 2CKFA
chains in the Genus database with same CATH superfamily
4HJLA 4QDFA 4QDCA 4HM0A 4PD4E 2E76D 2JZAA 2XR8A 3VMHD 3GB4A 3GZXA 4PV1D 4NBAD 1UUWA 3GL0A 2NVEA 4NBCD 2E4QA 3GL2A 4AAYB 1O7PA 2IBZE 2FYUE 1O7GA 1EG9A 4HM8A 2GBWA 3CX5E 4P1CH 1O7WA 1Q90C 1SQVE 2Q3WA 3H1JE 3GCEA 2HMKA 1SQXE 1UUVA 1PPJE 2BMRA 4NBHD 4NBFD 3VCPA 2A06E 1NYKA 3GOBA 2GBXA 2HMLA 4QUQA 2HMOA 4NBED 4NBBD 1JM1A 4OGQD 2QPZA 5HL4A 4EMJB 1BE3E 3CXHE 2ZYLA 3L73E 3N0QA 4QURA 3VCAA 3H1IE 3L75E 2XSHA 2BMQA 3L72E 4P1BH 1ULIA 2E4PA 2YFLA 1G8JB 2NVGA 3H1LE 4QDDA 2I7FA 3AZCA 3H1HE 2YFJA 3GKEA 2NVFA 5KLIC 3EN1A 1NDOA 4NBGD 3L70E 1FQTA 2YVJB 2HMNA 1KB9E 2QJKC 3DQYA 4HM1A 3FOUA 3GZYA 1L0NE 3L74E 1SQPE 3D89A 4QUPA 4NBDD 3VMID 1VM9A 2D2CD 1NTME 2NUKA 4QDFB 4U3FE 2E74D 3C0DA 1RFSA 1VF5D 1PP9E 1VCKA 4QCKA 2QJPC 2FYNC 5AEUA 4HM5A 5KKZC 2JO6A 3GTSA 4H0LD 2YIUC 1BCCE 2YFIA 4HM4A 1O7MA 4NB8D 5KLVE 1O7NA 1SQBE 1SJGA 1RIEA 1SQQE 3L71E 2XRXA 1ZRTE 3GTEA 3CWBE 4HM3A 2QJYC 1WQLA 2XSOA 3VMGD 5AEWA 3BCCE 3EQQA 1O7HA 2E75D 1NTZE 2B24A 4HM7A 4H13D 2DE7D 5CXMA 5BOKA 4NB9D 4AIVA 4H44D 2DE6D 2HMMA 1NU1E 1EZVE 1P84E 1KYOE 1ULJA 2B1XA 4HM6A 1G8KB 3TGUE 4HKVA 1NTKE 2BMOA 2HMJA 2NWFA 3H1KE 2NUMA 1L0LE 2ZT9D 2BCCE 4HM2A 2DE5D 2CKFA
chains in the Genus database with same CATH topology
4HJLA 4QDFA 4QDCA 4HM0A 4PD4E 2E76D 2JZAA 2XR8A 3VMHD 3GB4A 3GZXA 4PV1D 4NBAD 1UUWA 3GL0A 2NVEA 4NBCD 2E4QA 3GL2A 4AAYB 1O7PA 2IBZE 2FYUE 1O7GA 1EG9A 4HM8A 2GBWA 3CX5E 4P1CH 1O7WA 1Q90C 1SQVE 2Q3WA 3H1JE 3GCEA 2HMKA 1SQXE 1UUVA 1PPJE 2BMRA 4NBHD 4NBFD 3VCPA 2A06E 1NYKA 3GOBA 2GBXA 2HMLA 4QUQA 2HMOA 4NBED 4NBBD 1JM1A 4OGQD 2QPZA 5HL4A 4EMJB 1BE3E 3CXHE 2ZYLA 3L73E 3N0QA 4QURA 3VCAA 3H1IE 3L75E 2XSHA 2BMQA 3L72E 4P1BH 1ULIA 2E4PA 2YFLA 1G8JB 2NVGA 3H1LE 4QDDA 2I7FA 3AZCA 3H1HE 2YFJA 3GKEA 2NVFA 5KLIC 3EN1A 1NDOA 4NBGD 3L70E 1FQTA 2YVJB 2HMNA 1KB9E 2QJKC 3DQYA 4HM1A 3FOUA 3GZYA 1L0NE 3L74E 1SQPE 3D89A 4QUPA 4NBDD 3VMID 1VM9A 2D2CD 1NTME 2NUKA 4QDFB 4U3FE 2E74D 3C0DA 1RFSA 1VF5D 1PP9E 1VCKA 4QCKA 2QJPC 2FYNC 5AEUA 4HM5A 5KKZC 2JO6A 3GTSA 4H0LD 2YIUC 1BCCE 2YFIA 4HM4A 1O7MA 4NB8D 5KLVE 1O7NA 1SQBE 1SJGA 1RIEA 1SQQE 3L71E 2XRXA 1ZRTE 3GTEA 3CWBE 4HM3A 2QJYC 1WQLA 2XSOA 3VMGD 5AEWA 3BCCE 3EQQA 1O7HA 2E75D 1NTZE 2B24A 4HM7A 4H13D 2DE7D 5CXMA 5BOKA 4NB9D 4AIVA 4H44D 2DE6D 2HMMA 1NU1E 1EZVE 1P84E 1KYOE 1ULJA 2B1XA 4HM6A 1G8KB 3TGUE 4HKVA 1NTKE 2BMOA 2HMJA 2NWFA 3H1KE 2NUMA 1L0LE 2ZT9D 2BCCE 4HM2A 2DE5D 2CKFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HJL A;  4QDF A;  4QDC A;  4HM0 A;  4PD4 E;  2E76 D;  2JZA A;  2XR8 A;  3VMH D;  3GB4 A;  3GZX A;  4PV1 D;  4NBA D;  1UUW A;  3GL0 A;  2NVE A;  4NBC D;  2E4Q A;  3GL2 A;  4AAY B;  1O7P A;  2IBZ E;  2FYU E;  1O7G A;  1EG9 A;  4HM8 A;  2GBW A;  3CX5 E;  4P1C H;  1O7W A;  1Q90 C;  1SQV E;  2Q3W A;  3H1J E;  3GCE A;  2HMK A;  1SQX E;  1UUV A;  1PPJ E;  2BMR A;  4NBH D;  4NBF D;  3VCP A;  2A06 E;  1NYK A;  3GOB A;  2GBX A;  2HML A;  4QUQ A;  2HMO A;  4NBE D;  4NBB D;  1JM1 A;  4OGQ D;  2QPZ A;  5HL4 A;  4EMJ B;  1BE3 E;  3CXH E;  2ZYL A;  3L73 E;  3N0Q A;  4QUR A;  3VCA A;  3H1I E;  3L75 E;  2XSH A;  2BMQ A;  3L72 E;  4P1B H;  1ULI A;  2E4P A;  2YFL A;  1G8J B;  2NVG A;  3H1L E;  4QDD A;  2I7F A;  3AZC A;  3H1H E;  2YFJ A;  3GKE A;  2NVF A;  5KLI C;  3EN1 A;  1NDO A;  4NBG D;  3L70 E;  1FQT A;  2YVJ B;  2HMN A;  1KB9 E;  2QJK C;  3DQY A;  4HM1 A;  3FOU A;  3GZY A;  1L0N E;  3L74 E;  1SQP E;  3D89 A;  4QUP A;  4NBD D;  3VMI D;  1VM9 A;  2D2C D;  1NTM E;  2NUK A;  4QDF B;  4U3F E;  2E74 D;  3C0D A;  1RFS A;  1VF5 D;  1PP9 E;  1VCK A;  4QCK A;  2QJP C;  2FYN C;  5AEU A;  4HM5 A;  5KKZ C;  2JO6 A;  3GTS A;  4H0L D;  2YIU C;  1BCC E;  2YFI A;  4HM4 A;  1O7M A;  4NB8 D;  5KLV E;  1O7N A;  1SQB E;  1SJG A;  1RIE A;  1SQQ E;  3L71 E;  2XRX A;  1ZRT E;  3GTE A;  3CWB E;  4HM3 A;  2QJY C;  1WQL A;  2XSO A;  3VMG D;  5AEW A;  3BCC E;  3EQQ A;  1O7H A;  2E75 D;  1NTZ E;  2B24 A;  4HM7 A;  4H13 D;  2DE7 D;  5CXM A;  5BOK A;  4NB9 D;  4AIV A;  4H44 D;  2DE6 D;  2HMM A;  1NU1 E;  1EZV E;  1P84 E;  1KYO E;  1ULJ A;  2B1X A;  4HM6 A;  1G8K B;  3TGU E;  4HKV A;  1NTK E;  2BMO A;  2HMJ A;  2NWF A;  3H1K E;  2NUM A;  1L0L E;  2ZT9 D;  2BCC E;  4HM2 A;  2DE5 D;  2CKF A; 
#chains in the Genus database with same CATH topology
 4HJL A;  4QDF A;  4QDC A;  4HM0 A;  4PD4 E;  2E76 D;  2JZA A;  2XR8 A;  3VMH D;  3GB4 A;  3GZX A;  4PV1 D;  4NBA D;  1UUW A;  3GL0 A;  2NVE A;  4NBC D;  2E4Q A;  3GL2 A;  4AAY B;  1O7P A;  2IBZ E;  2FYU E;  1O7G A;  1EG9 A;  4HM8 A;  2GBW A;  3CX5 E;  4P1C H;  1O7W A;  1Q90 C;  1SQV E;  2Q3W A;  3H1J E;  3GCE A;  2HMK A;  1SQX E;  1UUV A;  1PPJ E;  2BMR A;  4NBH D;  4NBF D;  3VCP A;  2A06 E;  1NYK A;  3GOB A;  2GBX A;  2HML A;  4QUQ A;  2HMO A;  4NBE D;  4NBB D;  1JM1 A;  4OGQ D;  2QPZ A;  5HL4 A;  4EMJ B;  1BE3 E;  3CXH E;  2ZYL A;  3L73 E;  3N0Q A;  4QUR A;  3VCA A;  3H1I E;  3L75 E;  2XSH A;  2BMQ A;  3L72 E;  4P1B H;  1ULI A;  2E4P A;  2YFL A;  1G8J B;  2NVG A;  3H1L E;  4QDD A;  2I7F A;  3AZC A;  3H1H E;  2YFJ A;  3GKE A;  2NVF A;  5KLI C;  3EN1 A;  1NDO A;  4NBG D;  3L70 E;  1FQT A;  2YVJ B;  2HMN A;  1KB9 E;  2QJK C;  3DQY A;  4HM1 A;  3FOU A;  3GZY A;  1L0N E;  3L74 E;  1SQP E;  3D89 A;  4QUP A;  4NBD D;  3VMI D;  1VM9 A;  2D2C D;  1NTM E;  2NUK A;  4QDF B;  4U3F E;  2E74 D;  3C0D A;  1RFS A;  1VF5 D;  1PP9 E;  1VCK A;  4QCK A;  2QJP C;  2FYN C;  5AEU A;  4HM5 A;  5KKZ C;  2JO6 A;  3GTS A;  4H0L D;  2YIU C;  1BCC E;  2YFI A;  4HM4 A;  1O7M A;  4NB8 D;  5KLV E;  1O7N A;  1SQB E;  1SJG A;  1RIE A;  1SQQ E;  3L71 E;  2XRX A;  1ZRT E;  3GTE A;  3CWB E;  4HM3 A;  2QJY C;  1WQL A;  2XSO A;  3VMG D;  5AEW A;  3BCC E;  3EQQ A;  1O7H A;  2E75 D;  1NTZ E;  2B24 A;  4HM7 A;  4H13 D;  2DE7 D;  5CXM A;  5BOK A;  4NB9 D;  4AIV A;  4H44 D;  2DE6 D;  2HMM A;  1NU1 E;  1EZV E;  1P84 E;  1KYO E;  1ULJ A;  2B1X A;  4HM6 A;  1G8K B;  3TGU E;  4HKV A;  1NTK E;  2BMO A;  2HMJ A;  2NWF A;  3H1K E;  2NUM A;  1L0L E;  2ZT9 D;  2BCC E;  4HM2 A;  2DE5 D;  2CKF A; 
#chains in the Genus database with same CATH homology
 4HJL A;  4QDF A;  4QDC A;  4HM0 A;  4PD4 E;  2E76 D;  2JZA A;  2XR8 A;  3VMH D;  3GB4 A;  3GZX A;  4PV1 D;  4NBA D;  1UUW A;  3GL0 A;  2NVE A;  4NBC D;  2E4Q A;  3GL2 A;  4AAY B;  1O7P A;  2IBZ E;  2FYU E;  1O7G A;  1EG9 A;  4HM8 A;  2GBW A;  3CX5 E;  4P1C H;  1O7W A;  1Q90 C;  1SQV E;  2Q3W A;  3H1J E;  3GCE A;  2HMK A;  1SQX E;  1UUV A;  1PPJ E;  2BMR A;  4NBH D;  4NBF D;  3VCP A;  2A06 E;  1NYK A;  3GOB A;  2GBX A;  2HML A;  4QUQ A;  2HMO A;  4NBE D;  4NBB D;  1JM1 A;  4OGQ D;  2QPZ A;  5HL4 A;  4EMJ B;  1BE3 E;  3CXH E;  2ZYL A;  3L73 E;  3N0Q A;  4QUR A;  3VCA A;  3H1I E;  3L75 E;  2XSH A;  2BMQ A;  3L72 E;  4P1B H;  1ULI A;  2E4P A;  2YFL A;  1G8J B;  2NVG A;  3H1L E;  4QDD A;  2I7F A;  3AZC A;  3H1H E;  2YFJ A;  3GKE A;  2NVF A;  5KLI C;  3EN1 A;  1NDO A;  4NBG D;  3L70 E;  1FQT A;  2YVJ B;  2HMN A;  1KB9 E;  2QJK C;  3DQY A;  4HM1 A;  3FOU A;  3GZY A;  1L0N E;  3L74 E;  1SQP E;  3D89 A;  4QUP A;  4NBD D;  3VMI D;  1VM9 A;  2D2C D;  1NTM E;  2NUK A;  4QDF B;  4U3F E;  2E74 D;  3C0D A;  1RFS A;  1VF5 D;  1PP9 E;  1VCK A;  4QCK A;  2QJP C;  2FYN C;  5AEU A;  4HM5 A;  5KKZ C;  2JO6 A;  3GTS A;  4H0L D;  2YIU C;  1BCC E;  2YFI A;  4HM4 A;  1O7M A;  4NB8 D;  5KLV E;  1O7N A;  1SQB E;  1SJG A;  1RIE A;  1SQQ E;  3L71 E;  2XRX A;  1ZRT E;  3GTE A;  3CWB E;  4HM3 A;  2QJY C;  1WQL A;  2XSO A;  3VMG D;  5AEW A;  3BCC E;  3EQQ A;  1O7H A;  2E75 D;  1NTZ E;  2B24 A;  4HM7 A;  4H13 D;  2DE7 D;  5CXM A;  5BOK A;  4NB9 D;  4AIV A;  4H44 D;  2DE6 D;  2HMM A;  1NU1 E;  1EZV E;  1P84 E;  1KYO E;  1ULJ A;  2B1X A;  4HM6 A;  1G8K B;  3TGU E;  4HKV A;  1NTK E;  2BMO A;  2HMJ A;  2NWF A;  3H1K E;  2NUM A;  1L0L E;  2ZT9 D;  2BCC E;  4HM2 A;  2DE5 D;  2CKF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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