4NBHD

Carbazole-bound oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbhD00
2I7FA 2GBXA 2HMKA 2HMNA 2NWFA 3L71E 3VMGD 2NVEA 4P1BH 1ZRTE 2HMMA 2NVFA 4H13D 1JM1A 1NU1E 3GOBA 1VM9A 2ZT9D 1O7GA 3H1HE 3GZXA 3H1KE 2E75D 2NVGA 1G8JB 3CWBE 1SQXE 1UUVA 3VMID 3EN1A 4QDCA 5AEUA 4H44D 2YFLA 3GB4A 2BMQA 3CXHE 2DE6D 1NDOA 2Q3WA 4NB9D 3VCAA 1SQBE 3GZYA 4HM8A 4NBCD 2HMLA 1Q90C 1RIEA 2IBZE 1ULIA 1SQVE 1O7NA 2BCCE 2FYNC 1KB9E 2QJPC 3EQQA 1O7PA 2JO6A 4QCKA 3GCEA 4NBED 1UUWA 1VCKA 2JZAA 3GKEA 4NBFD 2E74D 3C0DA 2FYUE 4HM5A 4HM4A 4HJLA 2HMOA 5KLVE 4AAYB 1PPJE 2B24A 5KKZC 4HM0A 2ZYLA 3CX5E 4P1CH 2XSHA 2QPZA 4HM2A 4NBAD 4HM1A 4HM7A 1L0NE 1NYKA 4HM6A 4QDFA 4PV1D 3H1LE 5BOKA 2BMOA 3L73E 1BE3E 3N0QA 4QURA 4NBHD 3AZCA 2YIUC 2XR8A 2XSOA 4NB8D 1RFSA 1EZVE 3GL0A 5KLIC 4AIVA 1PP9E 3D89A 2E76D 3VMHD 1BCCE 3L72E 1WQLA 4QDDA 4U3FE 2NUMA 3H1IE 1O7WA 2DE7D 4H0LD 1SQQE 2YFIA 2E4PA 4OGQD 4NBDD 3L75E 1L0LE 4HKVA 2B1XA 1NTME 3GTEA 1O7MA 1P84E 3GTSA 4PD4E 2QJYC 4QDFB 1KYOE 3L70E 4QUQA 5AEWA 3TGUE 1SQPE 4EMJB 4QUPA 4NBGD 1NTZE 2XRXA 2CKFA 1NTKE 2NUKA 1VF5D 3BCCE 3L74E 1SJGA 2D2CD 2HMJA 2QJKC 3DQYA 4NBBD 1ULJA 3GL2A 2DE5D 3VCPA 2YFJA 2YVJB 5CXMA 5HL4A 1O7HA 2BMRA 2GBWA 4HM3A 1FQTA 1G8KB 3FOUA 1EG9A 3H1JE 2A06E 2E4QA
chains in the Genus database with same CATH superfamily
2I7FA 2GBXA 2HMKA 2HMNA 2NWFA 3L71E 3VMGD 2NVEA 4P1BH 1ZRTE 2HMMA 2NVFA 4H13D 1JM1A 1NU1E 3GOBA 1VM9A 2ZT9D 1O7GA 3H1HE 3GZXA 3H1KE 2E75D 2NVGA 1G8JB 3CWBE 1SQXE 1UUVA 3VMID 3EN1A 4QDCA 5AEUA 4H44D 2YFLA 3GB4A 2BMQA 3CXHE 2DE6D 1NDOA 2Q3WA 4NB9D 3VCAA 1SQBE 3GZYA 4HM8A 4NBCD 2HMLA 1Q90C 1RIEA 2IBZE 1ULIA 1SQVE 1O7NA 2BCCE 2FYNC 1KB9E 2QJPC 3EQQA 1O7PA 2JO6A 4QCKA 3GCEA 4NBED 1UUWA 1VCKA 2JZAA 3GKEA 4NBFD 2E74D 3C0DA 2FYUE 4HM5A 4HM4A 4HJLA 2HMOA 5KLVE 4AAYB 1PPJE 2B24A 5KKZC 4HM0A 2ZYLA 3CX5E 4P1CH 2XSHA 2QPZA 4HM2A 4NBAD 4HM1A 4HM7A 1L0NE 1NYKA 4HM6A 4QDFA 4PV1D 3H1LE 5BOKA 2BMOA 3L73E 1BE3E 3N0QA 4QURA 4NBHD 3AZCA 2YIUC 2XR8A 2XSOA 4NB8D 1RFSA 1EZVE 3GL0A 5KLIC 4AIVA 1PP9E 3D89A 2E76D 3VMHD 1BCCE 3L72E 1WQLA 4QDDA 4U3FE 2NUMA 3H1IE 1O7WA 2DE7D 4H0LD 1SQQE 2YFIA 2E4PA 4OGQD 4NBDD 3L75E 1L0LE 4HKVA 2B1XA 1NTME 3GTEA 1O7MA 1P84E 3GTSA 4PD4E 2QJYC 4QDFB 1KYOE 3L70E 4QUQA 5AEWA 3TGUE 1SQPE 4EMJB 4QUPA 4NBGD 1NTZE 2XRXA 2CKFA 1NTKE 2NUKA 1VF5D 3BCCE 3L74E 1SJGA 2D2CD 2HMJA 2QJKC 3DQYA 4NBBD 1ULJA 3GL2A 2DE5D 3VCPA 2YFJA 2YVJB 5CXMA 5HL4A 1O7HA 2BMRA 2GBWA 4HM3A 1FQTA 1G8KB 3FOUA 1EG9A 3H1JE 2A06E 2E4QA
chains in the Genus database with same CATH topology
2I7FA 2GBXA 2HMKA 2HMNA 2NWFA 3L71E 3VMGD 2NVEA 4P1BH 1ZRTE 2HMMA 2NVFA 4H13D 1JM1A 1NU1E 3GOBA 1VM9A 2ZT9D 1O7GA 3H1HE 3GZXA 3H1KE 2E75D 2NVGA 1G8JB 3CWBE 1SQXE 1UUVA 3VMID 3EN1A 4QDCA 5AEUA 4H44D 2YFLA 3GB4A 2BMQA 3CXHE 2DE6D 1NDOA 2Q3WA 4NB9D 3VCAA 1SQBE 3GZYA 4HM8A 4NBCD 2HMLA 1Q90C 1RIEA 2IBZE 1ULIA 1SQVE 1O7NA 2BCCE 2FYNC 1KB9E 2QJPC 3EQQA 1O7PA 2JO6A 4QCKA 3GCEA 4NBED 1UUWA 1VCKA 2JZAA 3GKEA 4NBFD 2E74D 3C0DA 2FYUE 4HM5A 4HM4A 4HJLA 2HMOA 5KLVE 4AAYB 1PPJE 2B24A 5KKZC 4HM0A 2ZYLA 3CX5E 4P1CH 2XSHA 2QPZA 4HM2A 4NBAD 4HM1A 4HM7A 1L0NE 1NYKA 4HM6A 4QDFA 4PV1D 3H1LE 5BOKA 2BMOA 3L73E 1BE3E 3N0QA 4QURA 4NBHD 3AZCA 2YIUC 2XR8A 2XSOA 4NB8D 1RFSA 1EZVE 3GL0A 5KLIC 4AIVA 1PP9E 3D89A 2E76D 3VMHD 1BCCE 3L72E 1WQLA 4QDDA 4U3FE 2NUMA 3H1IE 1O7WA 2DE7D 4H0LD 1SQQE 2YFIA 2E4PA 4OGQD 4NBDD 3L75E 1L0LE 4HKVA 2B1XA 1NTME 3GTEA 1O7MA 1P84E 3GTSA 4PD4E 2QJYC 4QDFB 1KYOE 3L70E 4QUQA 5AEWA 3TGUE 1SQPE 4EMJB 4QUPA 4NBGD 1NTZE 2XRXA 2CKFA 1NTKE 2NUKA 1VF5D 3BCCE 3L74E 1SJGA 2D2CD 2HMJA 2QJKC 3DQYA 4NBBD 1ULJA 3GL2A 2DE5D 3VCPA 2YFJA 2YVJB 5CXMA 5HL4A 1O7HA 2BMRA 2GBWA 4HM3A 1FQTA 1G8KB 3FOUA 1EG9A 3H1JE 2A06E 2E4QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I7F A;  2GBX A;  2HMK A;  2HMN A;  2NWF A;  3L71 E;  3VMG D;  2NVE A;  4P1B H;  1ZRT E;  2HMM A;  2NVF A;  4H13 D;  1JM1 A;  1NU1 E;  3GOB A;  1VM9 A;  2ZT9 D;  1O7G A;  3H1H E;  3GZX A;  3H1K E;  2E75 D;  2NVG A;  1G8J B;  3CWB E;  1SQX E;  1UUV A;  3VMI D;  3EN1 A;  4QDC A;  5AEU A;  4H44 D;  2YFL A;  3GB4 A;  2BMQ A;  3CXH E;  2DE6 D;  1NDO A;  2Q3W A;  4NB9 D;  3VCA A;  1SQB E;  3GZY A;  4HM8 A;  4NBC D;  2HML A;  1Q90 C;  1RIE A;  2IBZ E;  1ULI A;  1SQV E;  1O7N A;  2BCC E;  2FYN C;  1KB9 E;  2QJP C;  3EQQ A;  1O7P A;  2JO6 A;  4QCK A;  3GCE A;  4NBE D;  1UUW A;  1VCK A;  2JZA A;  3GKE A;  4NBF D;  2E74 D;  3C0D A;  2FYU E;  4HM5 A;  4HM4 A;  4HJL A;  2HMO A;  5KLV E;  4AAY B;  1PPJ E;  2B24 A;  5KKZ C;  4HM0 A;  2ZYL A;  3CX5 E;  4P1C H;  2XSH A;  2QPZ A;  4HM2 A;  4NBA D;  4HM1 A;  4HM7 A;  1L0N E;  1NYK A;  4HM6 A;  4QDF A;  4PV1 D;  3H1L E;  5BOK A;  2BMO A;  3L73 E;  1BE3 E;  3N0Q A;  4QUR A;  4NBH D;  3AZC A;  2YIU C;  2XR8 A;  2XSO A;  4NB8 D;  1RFS A;  1EZV E;  3GL0 A;  5KLI C;  4AIV A;  1PP9 E;  3D89 A;  2E76 D;  3VMH D;  1BCC E;  3L72 E;  1WQL A;  4QDD A;  4U3F E;  2NUM A;  3H1I E;  1O7W A;  2DE7 D;  4H0L D;  1SQQ E;  2YFI A;  2E4P A;  4OGQ D;  4NBD D;  3L75 E;  1L0L E;  4HKV A;  2B1X A;  1NTM E;  3GTE A;  1O7M A;  1P84 E;  3GTS A;  4PD4 E;  2QJY C;  4QDF B;  1KYO E;  3L70 E;  4QUQ A;  5AEW A;  3TGU E;  1SQP E;  4EMJ B;  4QUP A;  4NBG D;  1NTZ E;  2XRX A;  2CKF A;  1NTK E;  2NUK A;  1VF5 D;  3BCC E;  3L74 E;  1SJG A;  2D2C D;  2HMJ A;  2QJK C;  3DQY A;  4NBB D;  1ULJ A;  3GL2 A;  2DE5 D;  3VCP A;  2YFJ A;  2YVJ B;  5CXM A;  5HL4 A;  1O7H A;  2BMR A;  2GBW A;  4HM3 A;  1FQT A;  1G8K B;  3FOU A;  1EG9 A;  3H1J E;  2A06 E;  2E4Q A; 
#chains in the Genus database with same CATH topology
 2I7F A;  2GBX A;  2HMK A;  2HMN A;  2NWF A;  3L71 E;  3VMG D;  2NVE A;  4P1B H;  1ZRT E;  2HMM A;  2NVF A;  4H13 D;  1JM1 A;  1NU1 E;  3GOB A;  1VM9 A;  2ZT9 D;  1O7G A;  3H1H E;  3GZX A;  3H1K E;  2E75 D;  2NVG A;  1G8J B;  3CWB E;  1SQX E;  1UUV A;  3VMI D;  3EN1 A;  4QDC A;  5AEU A;  4H44 D;  2YFL A;  3GB4 A;  2BMQ A;  3CXH E;  2DE6 D;  1NDO A;  2Q3W A;  4NB9 D;  3VCA A;  1SQB E;  3GZY A;  4HM8 A;  4NBC D;  2HML A;  1Q90 C;  1RIE A;  2IBZ E;  1ULI A;  1SQV E;  1O7N A;  2BCC E;  2FYN C;  1KB9 E;  2QJP C;  3EQQ A;  1O7P A;  2JO6 A;  4QCK A;  3GCE A;  4NBE D;  1UUW A;  1VCK A;  2JZA A;  3GKE A;  4NBF D;  2E74 D;  3C0D A;  2FYU E;  4HM5 A;  4HM4 A;  4HJL A;  2HMO A;  5KLV E;  4AAY B;  1PPJ E;  2B24 A;  5KKZ C;  4HM0 A;  2ZYL A;  3CX5 E;  4P1C H;  2XSH A;  2QPZ A;  4HM2 A;  4NBA D;  4HM1 A;  4HM7 A;  1L0N E;  1NYK A;  4HM6 A;  4QDF A;  4PV1 D;  3H1L E;  5BOK A;  2BMO A;  3L73 E;  1BE3 E;  3N0Q A;  4QUR A;  4NBH D;  3AZC A;  2YIU C;  2XR8 A;  2XSO A;  4NB8 D;  1RFS A;  1EZV E;  3GL0 A;  5KLI C;  4AIV A;  1PP9 E;  3D89 A;  2E76 D;  3VMH D;  1BCC E;  3L72 E;  1WQL A;  4QDD A;  4U3F E;  2NUM A;  3H1I E;  1O7W A;  2DE7 D;  4H0L D;  1SQQ E;  2YFI A;  2E4P A;  4OGQ D;  4NBD D;  3L75 E;  1L0L E;  4HKV A;  2B1X A;  1NTM E;  3GTE A;  1O7M A;  1P84 E;  3GTS A;  4PD4 E;  2QJY C;  4QDF B;  1KYO E;  3L70 E;  4QUQ A;  5AEW A;  3TGU E;  1SQP E;  4EMJ B;  4QUP A;  4NBG D;  1NTZ E;  2XRX A;  2CKF A;  1NTK E;  2NUK A;  1VF5 D;  3BCC E;  3L74 E;  1SJG A;  2D2C D;  2HMJ A;  2QJK C;  3DQY A;  4NBB D;  1ULJ A;  3GL2 A;  2DE5 D;  3VCP A;  2YFJ A;  2YVJ B;  5CXM A;  5HL4 A;  1O7H A;  2BMR A;  2GBW A;  4HM3 A;  1FQT A;  1G8K B;  3FOU A;  1EG9 A;  3H1J E;  2A06 E;  2E4Q A; 
#chains in the Genus database with same CATH homology
 2I7F A;  2GBX A;  2HMK A;  2HMN A;  2NWF A;  3L71 E;  3VMG D;  2NVE A;  4P1B H;  1ZRT E;  2HMM A;  2NVF A;  4H13 D;  1JM1 A;  1NU1 E;  3GOB A;  1VM9 A;  2ZT9 D;  1O7G A;  3H1H E;  3GZX A;  3H1K E;  2E75 D;  2NVG A;  1G8J B;  3CWB E;  1SQX E;  1UUV A;  3VMI D;  3EN1 A;  4QDC A;  5AEU A;  4H44 D;  2YFL A;  3GB4 A;  2BMQ A;  3CXH E;  2DE6 D;  1NDO A;  2Q3W A;  4NB9 D;  3VCA A;  1SQB E;  3GZY A;  4HM8 A;  4NBC D;  2HML A;  1Q90 C;  1RIE A;  2IBZ E;  1ULI A;  1SQV E;  1O7N A;  2BCC E;  2FYN C;  1KB9 E;  2QJP C;  3EQQ A;  1O7P A;  2JO6 A;  4QCK A;  3GCE A;  4NBE D;  1UUW A;  1VCK A;  2JZA A;  3GKE A;  4NBF D;  2E74 D;  3C0D A;  2FYU E;  4HM5 A;  4HM4 A;  4HJL A;  2HMO A;  5KLV E;  4AAY B;  1PPJ E;  2B24 A;  5KKZ C;  4HM0 A;  2ZYL A;  3CX5 E;  4P1C H;  2XSH A;  2QPZ A;  4HM2 A;  4NBA D;  4HM1 A;  4HM7 A;  1L0N E;  1NYK A;  4HM6 A;  4QDF A;  4PV1 D;  3H1L E;  5BOK A;  2BMO A;  3L73 E;  1BE3 E;  3N0Q A;  4QUR A;  4NBH D;  3AZC A;  2YIU C;  2XR8 A;  2XSO A;  4NB8 D;  1RFS A;  1EZV E;  3GL0 A;  5KLI C;  4AIV A;  1PP9 E;  3D89 A;  2E76 D;  3VMH D;  1BCC E;  3L72 E;  1WQL A;  4QDD A;  4U3F E;  2NUM A;  3H1I E;  1O7W A;  2DE7 D;  4H0L D;  1SQQ E;  2YFI A;  2E4P A;  4OGQ D;  4NBD D;  3L75 E;  1L0L E;  4HKV A;  2B1X A;  1NTM E;  3GTE A;  1O7M A;  1P84 E;  3GTS A;  4PD4 E;  2QJY C;  4QDF B;  1KYO E;  3L70 E;  4QUQ A;  5AEW A;  3TGU E;  1SQP E;  4EMJ B;  4QUP A;  4NBG D;  1NTZ E;  2XRX A;  2CKF A;  1NTK E;  2NUK A;  1VF5 D;  3BCC E;  3L74 E;  1SJG A;  2D2C D;  2HMJ A;  2QJK C;  3DQY A;  4NBB D;  1ULJ A;  3GL2 A;  2DE5 D;  3VCP A;  2YFJ A;  2YVJ B;  5CXM A;  5HL4 A;  1O7H A;  2BMR A;  2GBW A;  4HM3 A;  1FQT A;  1G8K B;  3FOU A;  1EG9 A;  3H1J E;  2A06 E;  2E4Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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