4NBHD

Carbazole-bound oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbhD00
2NWFA 4NBHD 4QDFB 2FYUE 2E4PA 5AEUA 2ZYLA 3L71E 2JZAA 1NTKE 2DE5D 3L74E 1NDOA 1UUWA 1NU1E 3H1JE 2B24A 3EN1A 1UUVA 4HM8A 3CWBE 2JO6A 4NBED 2E4QA 2NVGA 1G8KB 3VCPA 2D2CD 3EQQA 4U3FE 3H1LE 4H13D 1NYKA 2E76D 3L70E 3H1HE 2BMQA 1NTME 2HMLA 2A06E 4NBCD 1RFSA 3FOUA 2FYNC 2XSOA 3GCEA 1BCCE 2QPZA 1KYOE 2DE6D 4NB9D 4OGQD 2Q3WA 5HL4A 1SJGA 4PV1D 1WQLA 1O7GA 4HM5A 2BCCE 4HJLA 1O7NA 2HMNA 4QURA 2HMJA 4QUPA 2I7FA 2HMOA 3VMHD 1SQBE 2DE7D 4HM0A 3C0DA 1RIEA 2QJKC 1O7MA 4NBBD 5KLVE 4HM6A 1O7HA 4NBGD 2XSHA 4P1BH 2NVFA 3TGUE 1KB9E 4NB8D 1JM1A 1ZRTE 3BCCE 4HM2A 1G8JB 3GL0A 4P1CH 1FQTA 4QDFA 2E74D 2HMKA 2GBWA 4NBFD 4AAYB 3H1IE 3GZYA 5BOKA 4HKVA 3GZXA 3H1KE 2GBXA 1ULJA 2ZT9D 3AZCA 1O7WA 1PPJE 3DQYA 3GL2A 2HMMA 2B1XA 1PP9E 3L73E 2NVEA 3L72E 1Q90C 4H0LD 3GKEA 4QDCA 2YFJA 4HM7A 2E75D 3VMID 4QDDA 2YIUC 1L0NE 5KKZC 2XRXA 2YVJB 3VMGD 1VF5D 1VCKA 2YFIA 1EG9A 3CX5E 1SQPE 3VCAA 3GTEA 2CKFA 3L75E 5CXMA 4NBAD 4QUQA 1O7PA 4HM3A 1EZVE 2NUMA 4H44D 1L0LE 2QJPC 4NBDD 1SQXE 1VM9A 3GOBA 4AIVA 1ULIA 4HM4A 1P84E 3GTSA 3GB4A 2BMOA 1SQVE 2YFLA 4PD4E 2QJYC 2BMRA 3D89A 5KLIC 2IBZE 3N0QA 2XR8A 4HM1A 3CXHE 4QCKA 4EMJB 1BE3E 1NTZE 1SQQE 2NUKA 5AEWA
chains in the Genus database with same CATH superfamily
2NWFA 4NBHD 4QDFB 2FYUE 2E4PA 5AEUA 2ZYLA 3L71E 2JZAA 1NTKE 2DE5D 3L74E 1NDOA 1UUWA 1NU1E 3H1JE 2B24A 3EN1A 1UUVA 4HM8A 3CWBE 2JO6A 4NBED 2E4QA 2NVGA 1G8KB 3VCPA 2D2CD 3EQQA 4U3FE 3H1LE 4H13D 1NYKA 2E76D 3L70E 3H1HE 2BMQA 1NTME 2HMLA 2A06E 4NBCD 1RFSA 3FOUA 2FYNC 2XSOA 3GCEA 1BCCE 2QPZA 1KYOE 2DE6D 4NB9D 4OGQD 2Q3WA 5HL4A 1SJGA 4PV1D 1WQLA 1O7GA 4HM5A 2BCCE 4HJLA 1O7NA 2HMNA 4QURA 2HMJA 4QUPA 2I7FA 2HMOA 3VMHD 1SQBE 2DE7D 4HM0A 3C0DA 1RIEA 2QJKC 1O7MA 4NBBD 5KLVE 4HM6A 1O7HA 4NBGD 2XSHA 4P1BH 2NVFA 3TGUE 1KB9E 4NB8D 1JM1A 1ZRTE 3BCCE 4HM2A 1G8JB 3GL0A 4P1CH 1FQTA 4QDFA 2E74D 2HMKA 2GBWA 4NBFD 4AAYB 3H1IE 3GZYA 5BOKA 4HKVA 3GZXA 3H1KE 2GBXA 1ULJA 2ZT9D 3AZCA 1O7WA 1PPJE 3DQYA 3GL2A 2HMMA 2B1XA 1PP9E 3L73E 2NVEA 3L72E 1Q90C 4H0LD 3GKEA 4QDCA 2YFJA 4HM7A 2E75D 3VMID 4QDDA 2YIUC 1L0NE 5KKZC 2XRXA 2YVJB 3VMGD 1VF5D 1VCKA 2YFIA 1EG9A 3CX5E 1SQPE 3VCAA 3GTEA 2CKFA 3L75E 5CXMA 4NBAD 4QUQA 1O7PA 4HM3A 1EZVE 2NUMA 4H44D 1L0LE 2QJPC 4NBDD 1SQXE 1VM9A 3GOBA 4AIVA 1ULIA 4HM4A 1P84E 3GTSA 3GB4A 2BMOA 1SQVE 2YFLA 4PD4E 2QJYC 2BMRA 3D89A 5KLIC 2IBZE 3N0QA 2XR8A 4HM1A 3CXHE 4QCKA 4EMJB 1BE3E 1NTZE 1SQQE 2NUKA 5AEWA
chains in the Genus database with same CATH topology
2NWFA 4NBHD 4QDFB 2FYUE 2E4PA 5AEUA 2ZYLA 3L71E 2JZAA 1NTKE 2DE5D 3L74E 1NDOA 1UUWA 1NU1E 3H1JE 2B24A 3EN1A 1UUVA 4HM8A 3CWBE 2JO6A 4NBED 2E4QA 2NVGA 1G8KB 3VCPA 2D2CD 3EQQA 4U3FE 3H1LE 4H13D 1NYKA 2E76D 3L70E 3H1HE 2BMQA 1NTME 2HMLA 2A06E 4NBCD 1RFSA 3FOUA 2FYNC 2XSOA 3GCEA 1BCCE 2QPZA 1KYOE 2DE6D 4NB9D 4OGQD 2Q3WA 5HL4A 1SJGA 4PV1D 1WQLA 1O7GA 4HM5A 2BCCE 4HJLA 1O7NA 2HMNA 4QURA 2HMJA 4QUPA 2I7FA 2HMOA 3VMHD 1SQBE 2DE7D 4HM0A 3C0DA 1RIEA 2QJKC 1O7MA 4NBBD 5KLVE 4HM6A 1O7HA 4NBGD 2XSHA 4P1BH 2NVFA 3TGUE 1KB9E 4NB8D 1JM1A 1ZRTE 3BCCE 4HM2A 1G8JB 3GL0A 4P1CH 1FQTA 4QDFA 2E74D 2HMKA 2GBWA 4NBFD 4AAYB 3H1IE 3GZYA 5BOKA 4HKVA 3GZXA 3H1KE 2GBXA 1ULJA 2ZT9D 3AZCA 1O7WA 1PPJE 3DQYA 3GL2A 2HMMA 2B1XA 1PP9E 3L73E 2NVEA 3L72E 1Q90C 4H0LD 3GKEA 4QDCA 2YFJA 4HM7A 2E75D 3VMID 4QDDA 2YIUC 1L0NE 5KKZC 2XRXA 2YVJB 3VMGD 1VF5D 1VCKA 2YFIA 1EG9A 3CX5E 1SQPE 3VCAA 3GTEA 2CKFA 3L75E 5CXMA 4NBAD 4QUQA 1O7PA 4HM3A 1EZVE 2NUMA 4H44D 1L0LE 2QJPC 4NBDD 1SQXE 1VM9A 3GOBA 4AIVA 1ULIA 4HM4A 1P84E 3GTSA 3GB4A 2BMOA 1SQVE 2YFLA 4PD4E 2QJYC 2BMRA 3D89A 5KLIC 2IBZE 3N0QA 2XR8A 4HM1A 3CXHE 4QCKA 4EMJB 1BE3E 1NTZE 1SQQE 2NUKA 5AEWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NWF A;  4NBH D;  4QDF B;  2FYU E;  2E4P A;  5AEU A;  2ZYL A;  3L71 E;  2JZA A;  1NTK E;  2DE5 D;  3L74 E;  1NDO A;  1UUW A;  1NU1 E;  3H1J E;  2B24 A;  3EN1 A;  1UUV A;  4HM8 A;  3CWB E;  2JO6 A;  4NBE D;  2E4Q A;  2NVG A;  1G8K B;  3VCP A;  2D2C D;  3EQQ A;  4U3F E;  3H1L E;  4H13 D;  1NYK A;  2E76 D;  3L70 E;  3H1H E;  2BMQ A;  1NTM E;  2HML A;  2A06 E;  4NBC D;  1RFS A;  3FOU A;  2FYN C;  2XSO A;  3GCE A;  1BCC E;  2QPZ A;  1KYO E;  2DE6 D;  4NB9 D;  4OGQ D;  2Q3W A;  5HL4 A;  1SJG A;  4PV1 D;  1WQL A;  1O7G A;  4HM5 A;  2BCC E;  4HJL A;  1O7N A;  2HMN A;  4QUR A;  2HMJ A;  4QUP A;  2I7F A;  2HMO A;  3VMH D;  1SQB E;  2DE7 D;  4HM0 A;  3C0D A;  1RIE A;  2QJK C;  1O7M A;  4NBB D;  5KLV E;  4HM6 A;  1O7H A;  4NBG D;  2XSH A;  4P1B H;  2NVF A;  3TGU E;  1KB9 E;  4NB8 D;  1JM1 A;  1ZRT E;  3BCC E;  4HM2 A;  1G8J B;  3GL0 A;  4P1C H;  1FQT A;  4QDF A;  2E74 D;  2HMK A;  2GBW A;  4NBF D;  4AAY B;  3H1I E;  3GZY A;  5BOK A;  4HKV A;  3GZX A;  3H1K E;  2GBX A;  1ULJ A;  2ZT9 D;  3AZC A;  1O7W A;  1PPJ E;  3DQY A;  3GL2 A;  2HMM A;  2B1X A;  1PP9 E;  3L73 E;  2NVE A;  3L72 E;  1Q90 C;  4H0L D;  3GKE A;  4QDC A;  2YFJ A;  4HM7 A;  2E75 D;  3VMI D;  4QDD A;  2YIU C;  1L0N E;  5KKZ C;  2XRX A;  2YVJ B;  3VMG D;  1VF5 D;  1VCK A;  2YFI A;  1EG9 A;  3CX5 E;  1SQP E;  3VCA A;  3GTE A;  2CKF A;  3L75 E;  5CXM A;  4NBA D;  4QUQ A;  1O7P A;  4HM3 A;  1EZV E;  2NUM A;  4H44 D;  1L0L E;  2QJP C;  4NBD D;  1SQX E;  1VM9 A;  3GOB A;  4AIV A;  1ULI A;  4HM4 A;  1P84 E;  3GTS A;  3GB4 A;  2BMO A;  1SQV E;  2YFL A;  4PD4 E;  2QJY C;  2BMR A;  3D89 A;  5KLI C;  2IBZ E;  3N0Q A;  2XR8 A;  4HM1 A;  3CXH E;  4QCK A;  4EMJ B;  1BE3 E;  1NTZ E;  1SQQ E;  2NUK A;  5AEW A; 
#chains in the Genus database with same CATH topology
 2NWF A;  4NBH D;  4QDF B;  2FYU E;  2E4P A;  5AEU A;  2ZYL A;  3L71 E;  2JZA A;  1NTK E;  2DE5 D;  3L74 E;  1NDO A;  1UUW A;  1NU1 E;  3H1J E;  2B24 A;  3EN1 A;  1UUV A;  4HM8 A;  3CWB E;  2JO6 A;  4NBE D;  2E4Q A;  2NVG A;  1G8K B;  3VCP A;  2D2C D;  3EQQ A;  4U3F E;  3H1L E;  4H13 D;  1NYK A;  2E76 D;  3L70 E;  3H1H E;  2BMQ A;  1NTM E;  2HML A;  2A06 E;  4NBC D;  1RFS A;  3FOU A;  2FYN C;  2XSO A;  3GCE A;  1BCC E;  2QPZ A;  1KYO E;  2DE6 D;  4NB9 D;  4OGQ D;  2Q3W A;  5HL4 A;  1SJG A;  4PV1 D;  1WQL A;  1O7G A;  4HM5 A;  2BCC E;  4HJL A;  1O7N A;  2HMN A;  4QUR A;  2HMJ A;  4QUP A;  2I7F A;  2HMO A;  3VMH D;  1SQB E;  2DE7 D;  4HM0 A;  3C0D A;  1RIE A;  2QJK C;  1O7M A;  4NBB D;  5KLV E;  4HM6 A;  1O7H A;  4NBG D;  2XSH A;  4P1B H;  2NVF A;  3TGU E;  1KB9 E;  4NB8 D;  1JM1 A;  1ZRT E;  3BCC E;  4HM2 A;  1G8J B;  3GL0 A;  4P1C H;  1FQT A;  4QDF A;  2E74 D;  2HMK A;  2GBW A;  4NBF D;  4AAY B;  3H1I E;  3GZY A;  5BOK A;  4HKV A;  3GZX A;  3H1K E;  2GBX A;  1ULJ A;  2ZT9 D;  3AZC A;  1O7W A;  1PPJ E;  3DQY A;  3GL2 A;  2HMM A;  2B1X A;  1PP9 E;  3L73 E;  2NVE A;  3L72 E;  1Q90 C;  4H0L D;  3GKE A;  4QDC A;  2YFJ A;  4HM7 A;  2E75 D;  3VMI D;  4QDD A;  2YIU C;  1L0N E;  5KKZ C;  2XRX A;  2YVJ B;  3VMG D;  1VF5 D;  1VCK A;  2YFI A;  1EG9 A;  3CX5 E;  1SQP E;  3VCA A;  3GTE A;  2CKF A;  3L75 E;  5CXM A;  4NBA D;  4QUQ A;  1O7P A;  4HM3 A;  1EZV E;  2NUM A;  4H44 D;  1L0L E;  2QJP C;  4NBD D;  1SQX E;  1VM9 A;  3GOB A;  4AIV A;  1ULI A;  4HM4 A;  1P84 E;  3GTS A;  3GB4 A;  2BMO A;  1SQV E;  2YFL A;  4PD4 E;  2QJY C;  2BMR A;  3D89 A;  5KLI C;  2IBZ E;  3N0Q A;  2XR8 A;  4HM1 A;  3CXH E;  4QCK A;  4EMJ B;  1BE3 E;  1NTZ E;  1SQQ E;  2NUK A;  5AEW A; 
#chains in the Genus database with same CATH homology
 2NWF A;  4NBH D;  4QDF B;  2FYU E;  2E4P A;  5AEU A;  2ZYL A;  3L71 E;  2JZA A;  1NTK E;  2DE5 D;  3L74 E;  1NDO A;  1UUW A;  1NU1 E;  3H1J E;  2B24 A;  3EN1 A;  1UUV A;  4HM8 A;  3CWB E;  2JO6 A;  4NBE D;  2E4Q A;  2NVG A;  1G8K B;  3VCP A;  2D2C D;  3EQQ A;  4U3F E;  3H1L E;  4H13 D;  1NYK A;  2E76 D;  3L70 E;  3H1H E;  2BMQ A;  1NTM E;  2HML A;  2A06 E;  4NBC D;  1RFS A;  3FOU A;  2FYN C;  2XSO A;  3GCE A;  1BCC E;  2QPZ A;  1KYO E;  2DE6 D;  4NB9 D;  4OGQ D;  2Q3W A;  5HL4 A;  1SJG A;  4PV1 D;  1WQL A;  1O7G A;  4HM5 A;  2BCC E;  4HJL A;  1O7N A;  2HMN A;  4QUR A;  2HMJ A;  4QUP A;  2I7F A;  2HMO A;  3VMH D;  1SQB E;  2DE7 D;  4HM0 A;  3C0D A;  1RIE A;  2QJK C;  1O7M A;  4NBB D;  5KLV E;  4HM6 A;  1O7H A;  4NBG D;  2XSH A;  4P1B H;  2NVF A;  3TGU E;  1KB9 E;  4NB8 D;  1JM1 A;  1ZRT E;  3BCC E;  4HM2 A;  1G8J B;  3GL0 A;  4P1C H;  1FQT A;  4QDF A;  2E74 D;  2HMK A;  2GBW A;  4NBF D;  4AAY B;  3H1I E;  3GZY A;  5BOK A;  4HKV A;  3GZX A;  3H1K E;  2GBX A;  1ULJ A;  2ZT9 D;  3AZC A;  1O7W A;  1PPJ E;  3DQY A;  3GL2 A;  2HMM A;  2B1X A;  1PP9 E;  3L73 E;  2NVE A;  3L72 E;  1Q90 C;  4H0L D;  3GKE A;  4QDC A;  2YFJ A;  4HM7 A;  2E75 D;  3VMI D;  4QDD A;  2YIU C;  1L0N E;  5KKZ C;  2XRX A;  2YVJ B;  3VMG D;  1VF5 D;  1VCK A;  2YFI A;  1EG9 A;  3CX5 E;  1SQP E;  3VCA A;  3GTE A;  2CKF A;  3L75 E;  5CXM A;  4NBA D;  4QUQ A;  1O7P A;  4HM3 A;  1EZV E;  2NUM A;  4H44 D;  1L0L E;  2QJP C;  4NBD D;  1SQX E;  1VM9 A;  3GOB A;  4AIV A;  1ULI A;  4HM4 A;  1P84 E;  3GTS A;  3GB4 A;  2BMO A;  1SQV E;  2YFL A;  4PD4 E;  2QJY C;  2BMR A;  3D89 A;  5KLI C;  2IBZ E;  3N0Q A;  2XR8 A;  4HM1 A;  3CXH E;  4QCK A;  4EMJ B;  1BE3 E;  1NTZ E;  1SQQ E;  2NUK A;  5AEW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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