4NBHD

Carbazole-bound oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbhD00
1FQTA 4OGQD 4HM5A 5KLIC 4HM4A 3EQQA 3C0DA 3L72E 2XRXA 3L73E 2NVFA 2B24A 4NBCD 1O7GA 3BCCE 4QDDA 1P84E 2Q3WA 3EN1A 4QDFA 3H1IE 1SQQE 2YFLA 1NDOA 1NTME 2JZAA 3H1JE 1SQXE 1PP9E 4NBGD 2IBZE 3AZCA 4HM7A 3L71E 1G8KB 5BOKA 4QDCA 2YIUC 2XSHA 4NB8D 1RIEA 2NWFA 4P1CH 5KKZC 1Q90C 2HMJA 1O7MA 3GOBA 2HMMA 4HKVA 2GBXA 2NVGA 1L0NE 2XSOA 1ULIA 3GZYA 3N0QA 2B1XA 2ZYLA 5AEWA 3DQYA 2XR8A 2JO6A 4NBFD 3VCPA 4QUPA 1WQLA 1G8JB 4PD4E 5KLVE 3VMID 3L74E 4QUQA 2QJKC 3GB4A 4EMJB 4H44D 2YFIA 2FYUE 1SJGA 1KB9E 3GL2A 4HM0A 1NYKA 4QCKA 5HL4A 2CKFA 4NBDD 2DE5D 4HM8A 3VCAA 2E75D 3H1KE 2HMKA 4HM3A 4NBHD 2A06E 1NTZE 4P1BH 4AIVA 4H13D 4AAYB 3GZXA 5AEUA 1O7NA 1JM1A 4PV1D 3H1HE 2D2CD 3VMGD 5CXMA 2FYNC 1L0LE 4NBAD 2QJPC 2HMOA 1BE3E 3CX5E 2YFJA 4H0LD 2GBWA 1BCCE 1ZRTE 2ZT9D 4HM2A 4HM1A 2YVJB 3FOUA 2BMOA 3GTSA 3L70E 2NUMA 3VMHD 1O7HA 1NTKE 2BMQA 1EZVE 2I7FA 3GL0A 4NB9D 2E4QA 4NBED 2NUKA 1NU1E 1ULJA 1VM9A 2E74D 1UUWA 1KYOE 2HMLA 2QJYC 1SQPE 1EG9A 3CWBE 2E76D 3GKEA 2HMNA 3H1LE 1UUVA 4HJLA 1VF5D 4U3FE 1O7WA 2BCCE 2BMRA 2DE6D 2E4PA 4NBBD 1SQBE 4HM6A 1VCKA 3D89A 1RFSA 2NVEA 3L75E 3GTEA 4QURA 4QDFB 3CXHE 3GCEA 1PPJE 3TGUE 1SQVE 2QPZA 2DE7D 1O7PA
chains in the Genus database with same CATH superfamily
1FQTA 4OGQD 4HM5A 5KLIC 4HM4A 3EQQA 3C0DA 3L72E 2XRXA 3L73E 2NVFA 2B24A 4NBCD 1O7GA 3BCCE 4QDDA 1P84E 2Q3WA 3EN1A 4QDFA 3H1IE 1SQQE 2YFLA 1NDOA 1NTME 2JZAA 3H1JE 1SQXE 1PP9E 4NBGD 2IBZE 3AZCA 4HM7A 3L71E 1G8KB 5BOKA 4QDCA 2YIUC 2XSHA 4NB8D 1RIEA 2NWFA 4P1CH 5KKZC 1Q90C 2HMJA 1O7MA 3GOBA 2HMMA 4HKVA 2GBXA 2NVGA 1L0NE 2XSOA 1ULIA 3GZYA 3N0QA 2B1XA 2ZYLA 5AEWA 3DQYA 2XR8A 2JO6A 4NBFD 3VCPA 4QUPA 1WQLA 1G8JB 4PD4E 5KLVE 3VMID 3L74E 4QUQA 2QJKC 3GB4A 4EMJB 4H44D 2YFIA 2FYUE 1SJGA 1KB9E 3GL2A 4HM0A 1NYKA 4QCKA 5HL4A 2CKFA 4NBDD 2DE5D 4HM8A 3VCAA 2E75D 3H1KE 2HMKA 4HM3A 4NBHD 2A06E 1NTZE 4P1BH 4AIVA 4H13D 4AAYB 3GZXA 5AEUA 1O7NA 1JM1A 4PV1D 3H1HE 2D2CD 3VMGD 5CXMA 2FYNC 1L0LE 4NBAD 2QJPC 2HMOA 1BE3E 3CX5E 2YFJA 4H0LD 2GBWA 1BCCE 1ZRTE 2ZT9D 4HM2A 4HM1A 2YVJB 3FOUA 2BMOA 3GTSA 3L70E 2NUMA 3VMHD 1O7HA 1NTKE 2BMQA 1EZVE 2I7FA 3GL0A 4NB9D 2E4QA 4NBED 2NUKA 1NU1E 1ULJA 1VM9A 2E74D 1UUWA 1KYOE 2HMLA 2QJYC 1SQPE 1EG9A 3CWBE 2E76D 3GKEA 2HMNA 3H1LE 1UUVA 4HJLA 1VF5D 4U3FE 1O7WA 2BCCE 2BMRA 2DE6D 2E4PA 4NBBD 1SQBE 4HM6A 1VCKA 3D89A 1RFSA 2NVEA 3L75E 3GTEA 4QURA 4QDFB 3CXHE 3GCEA 1PPJE 3TGUE 1SQVE 2QPZA 2DE7D 1O7PA
chains in the Genus database with same CATH topology
1FQTA 4OGQD 4HM5A 5KLIC 4HM4A 3EQQA 3C0DA 3L72E 2XRXA 3L73E 2NVFA 2B24A 4NBCD 1O7GA 3BCCE 4QDDA 1P84E 2Q3WA 3EN1A 4QDFA 3H1IE 1SQQE 2YFLA 1NDOA 1NTME 2JZAA 3H1JE 1SQXE 1PP9E 4NBGD 2IBZE 3AZCA 4HM7A 3L71E 1G8KB 5BOKA 4QDCA 2YIUC 2XSHA 4NB8D 1RIEA 2NWFA 4P1CH 5KKZC 1Q90C 2HMJA 1O7MA 3GOBA 2HMMA 4HKVA 2GBXA 2NVGA 1L0NE 2XSOA 1ULIA 3GZYA 3N0QA 2B1XA 2ZYLA 5AEWA 3DQYA 2XR8A 2JO6A 4NBFD 3VCPA 4QUPA 1WQLA 1G8JB 4PD4E 5KLVE 3VMID 3L74E 4QUQA 2QJKC 3GB4A 4EMJB 4H44D 2YFIA 2FYUE 1SJGA 1KB9E 3GL2A 4HM0A 1NYKA 4QCKA 5HL4A 2CKFA 4NBDD 2DE5D 4HM8A 3VCAA 2E75D 3H1KE 2HMKA 4HM3A 4NBHD 2A06E 1NTZE 4P1BH 4AIVA 4H13D 4AAYB 3GZXA 5AEUA 1O7NA 1JM1A 4PV1D 3H1HE 2D2CD 3VMGD 5CXMA 2FYNC 1L0LE 4NBAD 2QJPC 2HMOA 1BE3E 3CX5E 2YFJA 4H0LD 2GBWA 1BCCE 1ZRTE 2ZT9D 4HM2A 4HM1A 2YVJB 3FOUA 2BMOA 3GTSA 3L70E 2NUMA 3VMHD 1O7HA 1NTKE 2BMQA 1EZVE 2I7FA 3GL0A 4NB9D 2E4QA 4NBED 2NUKA 1NU1E 1ULJA 1VM9A 2E74D 1UUWA 1KYOE 2HMLA 2QJYC 1SQPE 1EG9A 3CWBE 2E76D 3GKEA 2HMNA 3H1LE 1UUVA 4HJLA 1VF5D 4U3FE 1O7WA 2BCCE 2BMRA 2DE6D 2E4PA 4NBBD 1SQBE 4HM6A 1VCKA 3D89A 1RFSA 2NVEA 3L75E 3GTEA 4QURA 4QDFB 3CXHE 3GCEA 1PPJE 3TGUE 1SQVE 2QPZA 2DE7D 1O7PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FQT A;  4OGQ D;  4HM5 A;  5KLI C;  4HM4 A;  3EQQ A;  3C0D A;  3L72 E;  2XRX A;  3L73 E;  2NVF A;  2B24 A;  4NBC D;  1O7G A;  3BCC E;  4QDD A;  1P84 E;  2Q3W A;  3EN1 A;  4QDF A;  3H1I E;  1SQQ E;  2YFL A;  1NDO A;  1NTM E;  2JZA A;  3H1J E;  1SQX E;  1PP9 E;  4NBG D;  2IBZ E;  3AZC A;  4HM7 A;  3L71 E;  1G8K B;  5BOK A;  4QDC A;  2YIU C;  2XSH A;  4NB8 D;  1RIE A;  2NWF A;  4P1C H;  5KKZ C;  1Q90 C;  2HMJ A;  1O7M A;  3GOB A;  2HMM A;  4HKV A;  2GBX A;  2NVG A;  1L0N E;  2XSO A;  1ULI A;  3GZY A;  3N0Q A;  2B1X A;  2ZYL A;  5AEW A;  3DQY A;  2XR8 A;  2JO6 A;  4NBF D;  3VCP A;  4QUP A;  1WQL A;  1G8J B;  4PD4 E;  5KLV E;  3VMI D;  3L74 E;  4QUQ A;  2QJK C;  3GB4 A;  4EMJ B;  4H44 D;  2YFI A;  2FYU E;  1SJG A;  1KB9 E;  3GL2 A;  4HM0 A;  1NYK A;  4QCK A;  5HL4 A;  2CKF A;  4NBD D;  2DE5 D;  4HM8 A;  3VCA A;  2E75 D;  3H1K E;  2HMK A;  4HM3 A;  4NBH D;  2A06 E;  1NTZ E;  4P1B H;  4AIV A;  4H13 D;  4AAY B;  3GZX A;  5AEU A;  1O7N A;  1JM1 A;  4PV1 D;  3H1H E;  2D2C D;  3VMG D;  5CXM A;  2FYN C;  1L0L E;  4NBA D;  2QJP C;  2HMO A;  1BE3 E;  3CX5 E;  2YFJ A;  4H0L D;  2GBW A;  1BCC E;  1ZRT E;  2ZT9 D;  4HM2 A;  4HM1 A;  2YVJ B;  3FOU A;  2BMO A;  3GTS A;  3L70 E;  2NUM A;  3VMH D;  1O7H A;  1NTK E;  2BMQ A;  1EZV E;  2I7F A;  3GL0 A;  4NB9 D;  2E4Q A;  4NBE D;  2NUK A;  1NU1 E;  1ULJ A;  1VM9 A;  2E74 D;  1UUW A;  1KYO E;  2HML A;  2QJY C;  1SQP E;  1EG9 A;  3CWB E;  2E76 D;  3GKE A;  2HMN A;  3H1L E;  1UUV A;  4HJL A;  1VF5 D;  4U3F E;  1O7W A;  2BCC E;  2BMR A;  2DE6 D;  2E4P A;  4NBB D;  1SQB E;  4HM6 A;  1VCK A;  3D89 A;  1RFS A;  2NVE A;  3L75 E;  3GTE A;  4QUR A;  4QDF B;  3CXH E;  3GCE A;  1PPJ E;  3TGU E;  1SQV E;  2QPZ A;  2DE7 D;  1O7P A; 
#chains in the Genus database with same CATH topology
 1FQT A;  4OGQ D;  4HM5 A;  5KLI C;  4HM4 A;  3EQQ A;  3C0D A;  3L72 E;  2XRX A;  3L73 E;  2NVF A;  2B24 A;  4NBC D;  1O7G A;  3BCC E;  4QDD A;  1P84 E;  2Q3W A;  3EN1 A;  4QDF A;  3H1I E;  1SQQ E;  2YFL A;  1NDO A;  1NTM E;  2JZA A;  3H1J E;  1SQX E;  1PP9 E;  4NBG D;  2IBZ E;  3AZC A;  4HM7 A;  3L71 E;  1G8K B;  5BOK A;  4QDC A;  2YIU C;  2XSH A;  4NB8 D;  1RIE A;  2NWF A;  4P1C H;  5KKZ C;  1Q90 C;  2HMJ A;  1O7M A;  3GOB A;  2HMM A;  4HKV A;  2GBX A;  2NVG A;  1L0N E;  2XSO A;  1ULI A;  3GZY A;  3N0Q A;  2B1X A;  2ZYL A;  5AEW A;  3DQY A;  2XR8 A;  2JO6 A;  4NBF D;  3VCP A;  4QUP A;  1WQL A;  1G8J B;  4PD4 E;  5KLV E;  3VMI D;  3L74 E;  4QUQ A;  2QJK C;  3GB4 A;  4EMJ B;  4H44 D;  2YFI A;  2FYU E;  1SJG A;  1KB9 E;  3GL2 A;  4HM0 A;  1NYK A;  4QCK A;  5HL4 A;  2CKF A;  4NBD D;  2DE5 D;  4HM8 A;  3VCA A;  2E75 D;  3H1K E;  2HMK A;  4HM3 A;  4NBH D;  2A06 E;  1NTZ E;  4P1B H;  4AIV A;  4H13 D;  4AAY B;  3GZX A;  5AEU A;  1O7N A;  1JM1 A;  4PV1 D;  3H1H E;  2D2C D;  3VMG D;  5CXM A;  2FYN C;  1L0L E;  4NBA D;  2QJP C;  2HMO A;  1BE3 E;  3CX5 E;  2YFJ A;  4H0L D;  2GBW A;  1BCC E;  1ZRT E;  2ZT9 D;  4HM2 A;  4HM1 A;  2YVJ B;  3FOU A;  2BMO A;  3GTS A;  3L70 E;  2NUM A;  3VMH D;  1O7H A;  1NTK E;  2BMQ A;  1EZV E;  2I7F A;  3GL0 A;  4NB9 D;  2E4Q A;  4NBE D;  2NUK A;  1NU1 E;  1ULJ A;  1VM9 A;  2E74 D;  1UUW A;  1KYO E;  2HML A;  2QJY C;  1SQP E;  1EG9 A;  3CWB E;  2E76 D;  3GKE A;  2HMN A;  3H1L E;  1UUV A;  4HJL A;  1VF5 D;  4U3F E;  1O7W A;  2BCC E;  2BMR A;  2DE6 D;  2E4P A;  4NBB D;  1SQB E;  4HM6 A;  1VCK A;  3D89 A;  1RFS A;  2NVE A;  3L75 E;  3GTE A;  4QUR A;  4QDF B;  3CXH E;  3GCE A;  1PPJ E;  3TGU E;  1SQV E;  2QPZ A;  2DE7 D;  1O7P A; 
#chains in the Genus database with same CATH homology
 1FQT A;  4OGQ D;  4HM5 A;  5KLI C;  4HM4 A;  3EQQ A;  3C0D A;  3L72 E;  2XRX A;  3L73 E;  2NVF A;  2B24 A;  4NBC D;  1O7G A;  3BCC E;  4QDD A;  1P84 E;  2Q3W A;  3EN1 A;  4QDF A;  3H1I E;  1SQQ E;  2YFL A;  1NDO A;  1NTM E;  2JZA A;  3H1J E;  1SQX E;  1PP9 E;  4NBG D;  2IBZ E;  3AZC A;  4HM7 A;  3L71 E;  1G8K B;  5BOK A;  4QDC A;  2YIU C;  2XSH A;  4NB8 D;  1RIE A;  2NWF A;  4P1C H;  5KKZ C;  1Q90 C;  2HMJ A;  1O7M A;  3GOB A;  2HMM A;  4HKV A;  2GBX A;  2NVG A;  1L0N E;  2XSO A;  1ULI A;  3GZY A;  3N0Q A;  2B1X A;  2ZYL A;  5AEW A;  3DQY A;  2XR8 A;  2JO6 A;  4NBF D;  3VCP A;  4QUP A;  1WQL A;  1G8J B;  4PD4 E;  5KLV E;  3VMI D;  3L74 E;  4QUQ A;  2QJK C;  3GB4 A;  4EMJ B;  4H44 D;  2YFI A;  2FYU E;  1SJG A;  1KB9 E;  3GL2 A;  4HM0 A;  1NYK A;  4QCK A;  5HL4 A;  2CKF A;  4NBD D;  2DE5 D;  4HM8 A;  3VCA A;  2E75 D;  3H1K E;  2HMK A;  4HM3 A;  4NBH D;  2A06 E;  1NTZ E;  4P1B H;  4AIV A;  4H13 D;  4AAY B;  3GZX A;  5AEU A;  1O7N A;  1JM1 A;  4PV1 D;  3H1H E;  2D2C D;  3VMG D;  5CXM A;  2FYN C;  1L0L E;  4NBA D;  2QJP C;  2HMO A;  1BE3 E;  3CX5 E;  2YFJ A;  4H0L D;  2GBW A;  1BCC E;  1ZRT E;  2ZT9 D;  4HM2 A;  4HM1 A;  2YVJ B;  3FOU A;  2BMO A;  3GTS A;  3L70 E;  2NUM A;  3VMH D;  1O7H A;  1NTK E;  2BMQ A;  1EZV E;  2I7F A;  3GL0 A;  4NB9 D;  2E4Q A;  4NBE D;  2NUK A;  1NU1 E;  1ULJ A;  1VM9 A;  2E74 D;  1UUW A;  1KYO E;  2HML A;  2QJY C;  1SQP E;  1EG9 A;  3CWB E;  2E76 D;  3GKE A;  2HMN A;  3H1L E;  1UUV A;  4HJL A;  1VF5 D;  4U3F E;  1O7W A;  2BCC E;  2BMR A;  2DE6 D;  2E4P A;  4NBB D;  1SQB E;  4HM6 A;  1VCK A;  3D89 A;  1RFS A;  2NVE A;  3L75 E;  3GTE A;  4QUR A;  4QDF B;  3CXH E;  3GCE A;  1PPJ E;  3TGU E;  1SQV E;  2QPZ A;  2DE7 D;  1O7P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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