4NBZA

Crystal structure of tcda-a1 bound to a26.8 vhh
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
136
structure length
136
Chain Sequence
GWVTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAPGIY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis for Antibody Recognition in the Receptor-binding Domains of Toxins A and B from Clostridium difficile.
pubmed doi rcsb
molecule tags Immune system
source organism Clostridium difficile
molecule keywords TcdA
total genus 21
structure length 136
sequence length 136
chains with identical sequence C
ec nomenclature
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01473 CW_binding_1 Putative cell wall binding repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 4nbzA00
3HZ3A 3KLKA 4X36A 3KLLA 2QJ6A 2G7CA 4TTUA 2V05A 1H8GA 2X8OA 4NBZA 2V04A 2F6EA 2X8PA 4TVCA 2J8GA 4NBXA 3HIAA 2IXUA 4AYGA 4NC0A 4NBYA 1GVMA 2J8FA 3TTOA 2VYUA 1H09A 1HCXA 2BMLA 2X8MA 3TTQA 1OBAA 2IXVA 4TVDA 4NC2A
chains in the Genus database with same CATH superfamily
3HZ3A 3KLKA 4X36A 3KLLA 2QJ6A 2G7CA 4TTUA 2V05A 1H8GA 2X8OA 4NBZA 2V04A 2F6EA 2X8PA 4TVCA 2J8GA 4NBXA 3HIAA 2IXUA 4AYGA 4NC0A 4NBYA 1GVMA 2J8FA 3TTOA 2VYUA 1H09A 1HCXA 2BMLA 2X8MA 3TTQA 1OBAA 2IXVA 4TVDA 4NC2A
chains in the Genus database with same CATH topology
3HZ3A 3KLKA 4X36A 3KLLA 2QJ6A 2G7CA 4TTUA 2V05A 1H8GA 2X8OA 4NBZA 2V04A 2F6EA 2X8PA 4TVCA 2J8GA 4NBXA 3HIAA 2IXUA 4AYGA 4NC0A 4NBYA 1GVMA 2J8FA 3TTOA 2VYUA 1H09A 1HCXA 2BMLA 2X8MA 3TTQA 1OBAA 2IXVA 4TVDA 4NC2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HZ3 A;  3KLK A;  4X36 A;  3KLL A;  2QJ6 A;  2G7C A;  4TTU A;  2V05 A;  1H8G A;  2X8O A;  4NBZ A;  2V04 A;  2F6E A;  2X8P A;  4TVC A;  2J8G A;  4NBX A;  3HIA A;  2IXU A;  4AYG A;  4NC0 A;  4NBY A;  1GVM A;  2J8F A;  3TTO A;  2VYU A;  1H09 A;  1HCX A;  2BML A;  2X8M A;  3TTQ A;  1OBA A;  2IXV A;  4TVD A;  4NC2 A; 
#chains in the Genus database with same CATH topology
 3HZ3 A;  3KLK A;  4X36 A;  3KLL A;  2QJ6 A;  2G7C A;  4TTU A;  2V05 A;  1H8G A;  2X8O A;  4NBZ A;  2V04 A;  2F6E A;  2X8P A;  4TVC A;  2J8G A;  4NBX A;  3HIA A;  2IXU A;  4AYG A;  4NC0 A;  4NBY A;  1GVM A;  2J8F A;  3TTO A;  2VYU A;  1H09 A;  1HCX A;  2BML A;  2X8M A;  3TTQ A;  1OBA A;  2IXV A;  4TVD A;  4NC2 A; 
#chains in the Genus database with same CATH homology
 3HZ3 A;  3KLK A;  4X36 A;  3KLL A;  2QJ6 A;  2G7C A;  4TTU A;  2V05 A;  1H8G A;  2X8O A;  4NBZ A;  2V04 A;  2F6E A;  2X8P A;  4TVC A;  2J8G A;  4NBX A;  3HIA A;  2IXU A;  4AYG A;  4NC0 A;  4NBY A;  1GVM A;  2J8F A;  3TTO A;  2VYU A;  1H09 A;  1HCX A;  2BML A;  2X8M A;  3TTQ A;  1OBA A;  2IXV A;  4TVD A;  4NC2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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