4NC2A

Crystal structure of tcdb-b1 bound to b39 vhh
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
121
structure length
121
Chain Sequence
HHHKGIMRTGLISFENNNYYFNENGEMQFGYINIEDKMFYFGEDGVMQIGVFNTPDGFKYFAHQNTLDENFEGESINYTGWLDLDEKRYYFTDEYIAATGSVIIDGEEYYFDPDTAQLVIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis for Antibody Recognition in the Receptor-binding Domains of Toxins A and B from Clostridium difficile.
pubmed doi rcsb
molecule tags Immune system
source organism Clostridium difficile
molecule keywords Toxin B
total genus 18
structure length 121
sequence length 121
ec nomenclature
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01473 CW_binding_1 Putative cell wall binding repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 4nc2A00
2QJ6A 2J8GA 4NC0A 4NBYA 2J8FA 1GVMA 2IXVA 2V04A 3HIAA 4TVCA 2VYUA 1OBAA 2V05A 2X8PA 3TTOA 2X8MA 2BMLA 1H09A 3KLKA 1HCXA 1H8GA 4AYGA 4NBZA 3KLLA 4TVDA 2F6EA 2G7CA 4NBXA 3HZ3A 4X36A 3TTQA 2X8OA 4TTUA 4NC2A 2IXUA
chains in the Genus database with same CATH superfamily
2QJ6A 2J8GA 4NC0A 4NBYA 2J8FA 1GVMA 2IXVA 2V04A 3HIAA 4TVCA 2VYUA 1OBAA 2V05A 2X8PA 3TTOA 2X8MA 2BMLA 1H09A 3KLKA 1HCXA 1H8GA 4AYGA 4NBZA 3KLLA 4TVDA 2F6EA 2G7CA 4NBXA 3HZ3A 4X36A 3TTQA 2X8OA 4TTUA 4NC2A 2IXUA
chains in the Genus database with same CATH topology
2QJ6A 2J8GA 4NC0A 4NBYA 2J8FA 1GVMA 2IXVA 2V04A 3HIAA 4TVCA 2VYUA 1OBAA 2V05A 2X8PA 3TTOA 2X8MA 2BMLA 1H09A 3KLKA 1HCXA 1H8GA 4AYGA 4NBZA 3KLLA 4TVDA 2F6EA 2G7CA 4NBXA 3HZ3A 4X36A 3TTQA 2X8OA 4TTUA 4NC2A 2IXUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJ6 A;  2J8G A;  4NC0 A;  4NBY A;  2J8F A;  1GVM A;  2IXV A;  2V04 A;  3HIA A;  4TVC A;  2VYU A;  1OBA A;  2V05 A;  2X8P A;  3TTO A;  2X8M A;  2BML A;  1H09 A;  3KLK A;  1HCX A;  1H8G A;  4AYG A;  4NBZ A;  3KLL A;  4TVD A;  2F6E A;  2G7C A;  4NBX A;  3HZ3 A;  4X36 A;  3TTQ A;  2X8O A;  4TTU A;  4NC2 A;  2IXU A; 
#chains in the Genus database with same CATH topology
 2QJ6 A;  2J8G A;  4NC0 A;  4NBY A;  2J8F A;  1GVM A;  2IXV A;  2V04 A;  3HIA A;  4TVC A;  2VYU A;  1OBA A;  2V05 A;  2X8P A;  3TTO A;  2X8M A;  2BML A;  1H09 A;  3KLK A;  1HCX A;  1H8G A;  4AYG A;  4NBZ A;  3KLL A;  4TVD A;  2F6E A;  2G7C A;  4NBX A;  3HZ3 A;  4X36 A;  3TTQ A;  2X8O A;  4TTU A;  4NC2 A;  2IXU A; 
#chains in the Genus database with same CATH homology
 2QJ6 A;  2J8G A;  4NC0 A;  4NBY A;  2J8F A;  1GVM A;  2IXV A;  2V04 A;  3HIA A;  4TVC A;  2VYU A;  1OBA A;  2V05 A;  2X8P A;  3TTO A;  2X8M A;  2BML A;  1H09 A;  3KLK A;  1HCX A;  1H8G A;  4AYG A;  4NBZ A;  3KLL A;  4TVD A;  2F6E A;  2G7C A;  4NBX A;  3HZ3 A;  4X36 A;  3TTQ A;  2X8O A;  4TTU A;  4NC2 A;  2IXU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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