4NDOA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
245
structure length
245
Chain Sequence
b'KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Molybdenum storage protein subunit beta
publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
total genus 76
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndoA00
3KZFA 2AKOA 3S6GA 3EK6A 1Z9DA 3QURA 2JJXA 4USJA 2JI5A 2BTYA 2R8VA 4JZ8A 3WWNA 2X2WA 1GS5A 2RD5A 3S6KA 1OH9A 2OGXB 3D2PA 3D41A 4NDOB 3QUOA 3L86A 3LL9A 2J0XA 2R98A 4Q1TA 2J4KA 3QVFA 3L76A 1E19A 2BNFA 3AB2A 3ZZHA 2V5HA 3S6HA 2BMUA 2AP9A 3EK5A 4KZTA 3WWMA 4NDRA 2W21A 3ZZGA 4F6TA 4OLCA 3K4OA 3T7BA 3AAWA 4NDPA 4I49A 3NWYA 2J4JA 4A7XA 2IJ9A 4A7WA 4NDQB 4NDQA 4AB7A 2J5TA 2BNEA 3QVHA 2BNDA 3K4YA 2E9YA 1OHAA 1GSJA 3C20A 1OHBA 2V4YA 3LL5A 3D2MA 4AXSA 1YBDA 3ZZIA 2WXBA 2HMFA 2BUFA 3C1MA 2WE4A 3K56A 2J4LA 1B7BA 3ZZFA 3D40A 2WE5A 3K52A 3B8GA 3QUNA 2A1FA 2BRIA 2J5VA 2BRXA 4JZ7A 4NDRB 3TVIA 4F6TB 2OGXA 3LKKA 4JZ9A 4NDOA 2CDQA 3AB4A 4NDPB 3C1NA 3U6UA 2VA1A 2JJ4A 2J0WA
chains in the Genus database with same CATH superfamily
3KZFA 2AKOA 3S6GA 3EK6A 1Z9DA 3QURA 2JJXA 4USJA 2JI5A 2BTYA 2R8VA 4JZ8A 3WWNA 2X2WA 1GS5A 2RD5A 3S6KA 1OH9A 2OGXB 3D2PA 3D41A 4NDOB 3QUOA 3L86A 3LL9A 2J0XA 2R98A 4Q1TA 2J4KA 3QVFA 3L76A 1E19A 2BNFA 3AB2A 3ZZHA 2V5HA 3S6HA 2BMUA 2AP9A 3EK5A 4KZTA 3WWMA 4NDRA 2W21A 3ZZGA 4F6TA 4OLCA 3K4OA 3T7BA 3AAWA 4NDPA 4I49A 3NWYA 2J4JA 4A7XA 2IJ9A 4A7WA 4NDQB 4NDQA 4AB7A 2J5TA 2BNEA 3QVHA 2BNDA 3K4YA 2E9YA 1OHAA 1GSJA 3C20A 1OHBA 2V4YA 3LL5A 3D2MA 4AXSA 1YBDA 3ZZIA 2WXBA 2HMFA 2BUFA 3C1MA 2WE4A 3K56A 2J4LA 1B7BA 3ZZFA 3D40A 2WE5A 3K52A 3B8GA 3QUNA 2A1FA 2BRIA 2J5VA 2BRXA 4JZ7A 4NDRB 3TVIA 4F6TB 2OGXA 3LKKA 4JZ9A 4NDOA 2CDQA 3AB4A 4NDPB 3C1NA 3U6UA 2VA1A 2JJ4A 2J0WA
chains in the Genus database with same CATH topology
3KZFA 2AKOA 3S6GA 3EK6A 1Z9DA 3QURA 2JJXA 4USJA 2JI5A 2BTYA 2R8VA 4JZ8A 3WWNA 2X2WA 1GS5A 2RD5A 3S6KA 1OH9A 2OGXB 3D2PA 3D41A 4NDOB 3QUOA 3L86A 3LL9A 2J0XA 2R98A 4Q1TA 2J4KA 3QVFA 3L76A 1E19A 2BNFA 3AB2A 3ZZHA 2V5HA 3S6HA 2BMUA 2AP9A 3EK5A 4KZTA 3WWMA 4NDRA 2W21A 3ZZGA 4F6TA 4OLCA 3K4OA 3T7BA 3AAWA 4NDPA 4I49A 3NWYA 2J4JA 4A7XA 2IJ9A 4A7WA 4NDQB 4NDQA 4AB7A 2J5TA 2BNEA 3QVHA 2BNDA 3K4YA 2E9YA 1OHAA 1GSJA 3C20A 1OHBA 2V4YA 3LL5A 3D2MA 4AXSA 1YBDA 3ZZIA 2WXBA 2HMFA 2BUFA 3C1MA 2WE4A 3K56A 2J4LA 1B7BA 3ZZFA 3D40A 2WE5A 3K52A 3B8GA 3QUNA 2A1FA 2BRIA 2J5VA 2BRXA 4JZ7A 4NDRB 3TVIA 4F6TB 2OGXA 3LKKA 4JZ9A 4NDOA 2CDQA 3AB4A 4NDPB 3C1NA 3U6UA 2VA1A 2JJ4A 2J0WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KZF A;  2AKO A;  3S6G A;  3EK6 A;  1Z9D A;  3QUR A;  2JJX A;  4USJ A;  2JI5 A;  2BTY A;  2R8V A;  4JZ8 A;  3WWN A;  2X2W A;  1GS5 A;  2RD5 A;  3S6K A;  1OH9 A;  2OGX B;  3D2P A;  3D41 A;  4NDO B;  3QUO A;  3L86 A;  3LL9 A;  2J0X A;  2R98 A;  4Q1T A;  2J4K A;  3QVF A;  3L76 A;  1E19 A;  2BNF A;  3AB2 A;  3ZZH A;  2V5H A;  3S6H A;  2BMU A;  2AP9 A;  3EK5 A;  4KZT A;  3WWM A;  4NDR A;  2W21 A;  3ZZG A;  4F6T A;  4OLC A;  3K4O A;  3T7B A;  3AAW A;  4NDP A;  4I49 A;  3NWY A;  2J4J A;  4A7X A;  2IJ9 A;  4A7W A;  4NDQ B;  4NDQ A;  4AB7 A;  2J5T A;  2BNE A;  3QVH A;  2BND A;  3K4Y A;  2E9Y A;  1OHA A;  1GSJ A;  3C20 A;  1OHB A;  2V4Y A;  3LL5 A;  3D2M A;  4AXS A;  1YBD A;  3ZZI A;  2WXB A;  2HMF A;  2BUF A;  3C1M A;  2WE4 A;  3K56 A;  2J4L A;  1B7B A;  3ZZF A;  3D40 A;  2WE5 A;  3K52 A;  3B8G A;  3QUN A;  2A1F A;  2BRI A;  2J5V A;  2BRX A;  4JZ7 A;  4NDR B;  3TVI A;  4F6T B;  2OGX A;  3LKK A;  4JZ9 A;  4NDO A;  2CDQ A;  3AB4 A;  4NDP B;  3C1N A;  3U6U A;  2VA1 A;  2JJ4 A;  2J0W A; 
#chains in the Genus database with same CATH topology
 3KZF A;  2AKO A;  3S6G A;  3EK6 A;  1Z9D A;  3QUR A;  2JJX A;  4USJ A;  2JI5 A;  2BTY A;  2R8V A;  4JZ8 A;  3WWN A;  2X2W A;  1GS5 A;  2RD5 A;  3S6K A;  1OH9 A;  2OGX B;  3D2P A;  3D41 A;  4NDO B;  3QUO A;  3L86 A;  3LL9 A;  2J0X A;  2R98 A;  4Q1T A;  2J4K A;  3QVF A;  3L76 A;  1E19 A;  2BNF A;  3AB2 A;  3ZZH A;  2V5H A;  3S6H A;  2BMU A;  2AP9 A;  3EK5 A;  4KZT A;  3WWM A;  4NDR A;  2W21 A;  3ZZG A;  4F6T A;  4OLC A;  3K4O A;  3T7B A;  3AAW A;  4NDP A;  4I49 A;  3NWY A;  2J4J A;  4A7X A;  2IJ9 A;  4A7W A;  4NDQ B;  4NDQ A;  4AB7 A;  2J5T A;  2BNE A;  3QVH A;  2BND A;  3K4Y A;  2E9Y A;  1OHA A;  1GSJ A;  3C20 A;  1OHB A;  2V4Y A;  3LL5 A;  3D2M A;  4AXS A;  1YBD A;  3ZZI A;  2WXB A;  2HMF A;  2BUF A;  3C1M A;  2WE4 A;  3K56 A;  2J4L A;  1B7B A;  3ZZF A;  3D40 A;  2WE5 A;  3K52 A;  3B8G A;  3QUN A;  2A1F A;  2BRI A;  2J5V A;  2BRX A;  4JZ7 A;  4NDR B;  3TVI A;  4F6T B;  2OGX A;  3LKK A;  4JZ9 A;  4NDO A;  2CDQ A;  3AB4 A;  4NDP B;  3C1N A;  3U6U A;  2VA1 A;  2JJ4 A;  2J0W A; 
#chains in the Genus database with same CATH homology
 3KZF A;  2AKO A;  3S6G A;  3EK6 A;  1Z9D A;  3QUR A;  2JJX A;  4USJ A;  2JI5 A;  2BTY A;  2R8V A;  4JZ8 A;  3WWN A;  2X2W A;  1GS5 A;  2RD5 A;  3S6K A;  1OH9 A;  2OGX B;  3D2P A;  3D41 A;  4NDO B;  3QUO A;  3L86 A;  3LL9 A;  2J0X A;  2R98 A;  4Q1T A;  2J4K A;  3QVF A;  3L76 A;  1E19 A;  2BNF A;  3AB2 A;  3ZZH A;  2V5H A;  3S6H A;  2BMU A;  2AP9 A;  3EK5 A;  4KZT A;  3WWM A;  4NDR A;  2W21 A;  3ZZG A;  4F6T A;  4OLC A;  3K4O A;  3T7B A;  3AAW A;  4NDP A;  4I49 A;  3NWY A;  2J4J A;  4A7X A;  2IJ9 A;  4A7W A;  4NDQ B;  4NDQ A;  4AB7 A;  2J5T A;  2BNE A;  3QVH A;  2BND A;  3K4Y A;  2E9Y A;  1OHA A;  1GSJ A;  3C20 A;  1OHB A;  2V4Y A;  3LL5 A;  3D2M A;  4AXS A;  1YBD A;  3ZZI A;  2WXB A;  2HMF A;  2BUF A;  3C1M A;  2WE4 A;  3K56 A;  2J4L A;  1B7B A;  3ZZF A;  3D40 A;  2WE5 A;  3K52 A;  3B8G A;  3QUN A;  2A1F A;  2BRI A;  2J5V A;  2BRX A;  4JZ7 A;  4NDR B;  3TVI A;  4F6T B;  2OGX A;  3LKK A;  4JZ9 A;  4NDO A;  2CDQ A;  3AB4 A;  4NDP B;  3C1N A;  3U6U A;  2VA1 A;  2JJ4 A;  2J0W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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