4NDOA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
molecule keywords Molybdenum storage protein subunit beta
total genus 76
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndoA00
2JI5A 3TVIA 3D2MA 4AXSA 2AP9A 2BRIA 2OGXA 2R98A 4NDPB 2WE4A 4NDRA 3NWYA 3S6GA 2IJ9A 2R8VA 3S6KA 2A1FA 1B7BA 2E9YA 3L86A 2JJXA 4KZTA 2BMUA 2JJ4A 2J0WA 2BUFA 2X2WA 3LL9A 4OLCA 1Z9DA 2HMFA 3KZFA 3WWMA 4I49A 3D41A 2W21A 3B8GA 4JZ7A 1OH9A 2BNDA 3AB4A 2BTYA 3ZZGA 4A7XA 4F6TA 3AAWA 1YBDA 2BNEA 3EK6A 3LL5A 2J4JA 4AB7A 3LKKA 4Q1TA 3C20A 4NDQA 4NDOB 2RD5A 3ZZFA 4F6TB 3L76A 4NDOA 4A7WA 2WXBA 1GSJA 3D2PA 1E19A 1OHAA 2V4YA 3AB2A 3S6HA 2OGXB 3D40A 3K52A 2V5HA 3T7BA 3QVFA 2J0XA 3QUOA 4NDPA 3K4OA 4JZ8A 3ZZHA 2J4LA 3QUNA 4USJA 2J4KA 2J5TA 2J5VA 3EK5A 3K4YA 3QVHA 4NDRB 3U6UA 3QURA 2VA1A 4JZ9A 2CDQA 3WWNA 2AKOA 1OHBA 2BNFA 3C1MA 2BRXA 3C1NA 3ZZIA 3K56A 1GS5A 2WE5A 4NDQB
chains in the Genus database with same CATH superfamily
2JI5A 3TVIA 3D2MA 4AXSA 2AP9A 2BRIA 2OGXA 2R98A 4NDPB 2WE4A 4NDRA 3NWYA 3S6GA 2IJ9A 2R8VA 3S6KA 2A1FA 1B7BA 2E9YA 3L86A 2JJXA 4KZTA 2BMUA 2JJ4A 2J0WA 2BUFA 2X2WA 3LL9A 4OLCA 1Z9DA 2HMFA 3KZFA 3WWMA 4I49A 3D41A 2W21A 3B8GA 4JZ7A 1OH9A 2BNDA 3AB4A 2BTYA 3ZZGA 4A7XA 4F6TA 3AAWA 1YBDA 2BNEA 3EK6A 3LL5A 2J4JA 4AB7A 3LKKA 4Q1TA 3C20A 4NDQA 4NDOB 2RD5A 3ZZFA 4F6TB 3L76A 4NDOA 4A7WA 2WXBA 1GSJA 3D2PA 1E19A 1OHAA 2V4YA 3AB2A 3S6HA 2OGXB 3D40A 3K52A 2V5HA 3T7BA 3QVFA 2J0XA 3QUOA 4NDPA 3K4OA 4JZ8A 3ZZHA 2J4LA 3QUNA 4USJA 2J4KA 2J5TA 2J5VA 3EK5A 3K4YA 3QVHA 4NDRB 3U6UA 3QURA 2VA1A 4JZ9A 2CDQA 3WWNA 2AKOA 1OHBA 2BNFA 3C1MA 2BRXA 3C1NA 3ZZIA 3K56A 1GS5A 2WE5A 4NDQB
chains in the Genus database with same CATH topology
2JI5A 3TVIA 3D2MA 4AXSA 2AP9A 2BRIA 2OGXA 2R98A 4NDPB 2WE4A 4NDRA 3NWYA 3S6GA 2IJ9A 2R8VA 3S6KA 2A1FA 1B7BA 2E9YA 3L86A 2JJXA 4KZTA 2BMUA 2JJ4A 2J0WA 2BUFA 2X2WA 3LL9A 4OLCA 1Z9DA 2HMFA 3KZFA 3WWMA 4I49A 3D41A 2W21A 3B8GA 4JZ7A 1OH9A 2BNDA 3AB4A 2BTYA 3ZZGA 4A7XA 4F6TA 3AAWA 1YBDA 2BNEA 3EK6A 3LL5A 2J4JA 4AB7A 3LKKA 4Q1TA 3C20A 4NDQA 4NDOB 2RD5A 3ZZFA 4F6TB 3L76A 4NDOA 4A7WA 2WXBA 1GSJA 3D2PA 1E19A 1OHAA 2V4YA 3AB2A 3S6HA 2OGXB 3D40A 3K52A 2V5HA 3T7BA 3QVFA 2J0XA 3QUOA 4NDPA 3K4OA 4JZ8A 3ZZHA 2J4LA 3QUNA 4USJA 2J4KA 2J5TA 2J5VA 3EK5A 3K4YA 3QVHA 4NDRB 3U6UA 3QURA 2VA1A 4JZ9A 2CDQA 3WWNA 2AKOA 1OHBA 2BNFA 3C1MA 2BRXA 3C1NA 3ZZIA 3K56A 1GS5A 2WE5A 4NDQB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JI5 A;  3TVI A;  3D2M A;  4AXS A;  2AP9 A;  2BRI A;  2OGX A;  2R98 A;  4NDP B;  2WE4 A;  4NDR A;  3NWY A;  3S6G A;  2IJ9 A;  2R8V A;  3S6K A;  2A1F A;  1B7B A;  2E9Y A;  3L86 A;  2JJX A;  4KZT A;  2BMU A;  2JJ4 A;  2J0W A;  2BUF A;  2X2W A;  3LL9 A;  4OLC A;  1Z9D A;  2HMF A;  3KZF A;  3WWM A;  4I49 A;  3D41 A;  2W21 A;  3B8G A;  4JZ7 A;  1OH9 A;  2BND A;  3AB4 A;  2BTY A;  3ZZG A;  4A7X A;  4F6T A;  3AAW A;  1YBD A;  2BNE A;  3EK6 A;  3LL5 A;  2J4J A;  4AB7 A;  3LKK A;  4Q1T A;  3C20 A;  4NDQ A;  4NDO B;  2RD5 A;  3ZZF A;  4F6T B;  3L76 A;  4NDO A;  4A7W A;  2WXB A;  1GSJ A;  3D2P A;  1E19 A;  1OHA A;  2V4Y A;  3AB2 A;  3S6H A;  2OGX B;  3D40 A;  3K52 A;  2V5H A;  3T7B A;  3QVF A;  2J0X A;  3QUO A;  4NDP A;  3K4O A;  4JZ8 A;  3ZZH A;  2J4L A;  3QUN A;  4USJ A;  2J4K A;  2J5T A;  2J5V A;  3EK5 A;  3K4Y A;  3QVH A;  4NDR B;  3U6U A;  3QUR A;  2VA1 A;  4JZ9 A;  2CDQ A;  3WWN A;  2AKO A;  1OHB A;  2BNF A;  3C1M A;  2BRX A;  3C1N A;  3ZZI A;  3K56 A;  1GS5 A;  2WE5 A;  4NDQ B; 
#chains in the Genus database with same CATH topology
 2JI5 A;  3TVI A;  3D2M A;  4AXS A;  2AP9 A;  2BRI A;  2OGX A;  2R98 A;  4NDP B;  2WE4 A;  4NDR A;  3NWY A;  3S6G A;  2IJ9 A;  2R8V A;  3S6K A;  2A1F A;  1B7B A;  2E9Y A;  3L86 A;  2JJX A;  4KZT A;  2BMU A;  2JJ4 A;  2J0W A;  2BUF A;  2X2W A;  3LL9 A;  4OLC A;  1Z9D A;  2HMF A;  3KZF A;  3WWM A;  4I49 A;  3D41 A;  2W21 A;  3B8G A;  4JZ7 A;  1OH9 A;  2BND A;  3AB4 A;  2BTY A;  3ZZG A;  4A7X A;  4F6T A;  3AAW A;  1YBD A;  2BNE A;  3EK6 A;  3LL5 A;  2J4J A;  4AB7 A;  3LKK A;  4Q1T A;  3C20 A;  4NDQ A;  4NDO B;  2RD5 A;  3ZZF A;  4F6T B;  3L76 A;  4NDO A;  4A7W A;  2WXB A;  1GSJ A;  3D2P A;  1E19 A;  1OHA A;  2V4Y A;  3AB2 A;  3S6H A;  2OGX B;  3D40 A;  3K52 A;  2V5H A;  3T7B A;  3QVF A;  2J0X A;  3QUO A;  4NDP A;  3K4O A;  4JZ8 A;  3ZZH A;  2J4L A;  3QUN A;  4USJ A;  2J4K A;  2J5T A;  2J5V A;  3EK5 A;  3K4Y A;  3QVH A;  4NDR B;  3U6U A;  3QUR A;  2VA1 A;  4JZ9 A;  2CDQ A;  3WWN A;  2AKO A;  1OHB A;  2BNF A;  3C1M A;  2BRX A;  3C1N A;  3ZZI A;  3K56 A;  1GS5 A;  2WE5 A;  4NDQ B; 
#chains in the Genus database with same CATH homology
 2JI5 A;  3TVI A;  3D2M A;  4AXS A;  2AP9 A;  2BRI A;  2OGX A;  2R98 A;  4NDP B;  2WE4 A;  4NDR A;  3NWY A;  3S6G A;  2IJ9 A;  2R8V A;  3S6K A;  2A1F A;  1B7B A;  2E9Y A;  3L86 A;  2JJX A;  4KZT A;  2BMU A;  2JJ4 A;  2J0W A;  2BUF A;  2X2W A;  3LL9 A;  4OLC A;  1Z9D A;  2HMF A;  3KZF A;  3WWM A;  4I49 A;  3D41 A;  2W21 A;  3B8G A;  4JZ7 A;  1OH9 A;  2BND A;  3AB4 A;  2BTY A;  3ZZG A;  4A7X A;  4F6T A;  3AAW A;  1YBD A;  2BNE A;  3EK6 A;  3LL5 A;  2J4J A;  4AB7 A;  3LKK A;  4Q1T A;  3C20 A;  4NDQ A;  4NDO B;  2RD5 A;  3ZZF A;  4F6T B;  3L76 A;  4NDO A;  4A7W A;  2WXB A;  1GSJ A;  3D2P A;  1E19 A;  1OHA A;  2V4Y A;  3AB2 A;  3S6H A;  2OGX B;  3D40 A;  3K52 A;  2V5H A;  3T7B A;  3QVF A;  2J0X A;  3QUO A;  4NDP A;  3K4O A;  4JZ8 A;  3ZZH A;  2J4L A;  3QUN A;  4USJ A;  2J4K A;  2J5T A;  2J5V A;  3EK5 A;  3K4Y A;  3QVH A;  4NDR B;  3U6U A;  3QUR A;  2VA1 A;  4JZ9 A;  2CDQ A;  3WWN A;  2AKO A;  1OHB A;  2BNF A;  3C1M A;  2BRX A;  3C1N A;  3ZZI A;  3K56 A;  1GS5 A;  2WE5 A;  4NDQ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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