4NDOA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Molybdenum storage protein subunit beta
publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
total genus 76
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndoA00
2J0WA 3L76A 2J5TA 3QURA 2JJXA 2R8VA 4NDRA 2J0XA 3D2PA 2AP9A 2J4JA 2WXBA 3TVIA 3K52A 2BMUA 3S6HA 2VA1A 3D40A 4NDPB 4F6TB 3S6GA 1E19A 4KZTA 1GS5A 2BRXA 2J4KA 1OHAA 4A7WA 3B8GA 4NDRB 2OGXB 2BUFA 2CDQA 4NDQA 2OGXA 4NDOA 4Q1TA 3L86A 2A1FA 3LKKA 3ZZFA 1OH9A 3AB4A 2JJ4A 2BTYA 3U6UA 3K56A 2BNFA 2X2WA 4JZ7A 2IJ9A 1YBDA 2BNDA 4NDQB 2J4LA 4NDOB 3EK5A 4USJA 2BRIA 2W21A 4JZ8A 3QVHA 2AKOA 4JZ9A 2E9YA 3QUOA 3NWYA 3C1MA 1Z9DA 2J5VA 2V5HA 1GSJA 1B7BA 3T7BA 1OHBA 3WWNA 2RD5A 3LL9A 4I49A 4OLCA 3ZZIA 3EK6A 3K4OA 3QVFA 3ZZHA 2WE4A 3D2MA 2R98A 4AXSA 4AB7A 3KZFA 3AAWA 3K4YA 2V4YA 4A7XA 3S6KA 2WE5A 3AB2A 3LL5A 3D41A 2BNEA 3C1NA 2JI5A 3QUNA 3ZZGA 3WWMA 2HMFA 4NDPA 4F6TA 3C20A
chains in the Genus database with same CATH superfamily
2J0WA 3L76A 2J5TA 3QURA 2JJXA 2R8VA 4NDRA 2J0XA 3D2PA 2AP9A 2J4JA 2WXBA 3TVIA 3K52A 2BMUA 3S6HA 2VA1A 3D40A 4NDPB 4F6TB 3S6GA 1E19A 4KZTA 1GS5A 2BRXA 2J4KA 1OHAA 4A7WA 3B8GA 4NDRB 2OGXB 2BUFA 2CDQA 4NDQA 2OGXA 4NDOA 4Q1TA 3L86A 2A1FA 3LKKA 3ZZFA 1OH9A 3AB4A 2JJ4A 2BTYA 3U6UA 3K56A 2BNFA 2X2WA 4JZ7A 2IJ9A 1YBDA 2BNDA 4NDQB 2J4LA 4NDOB 3EK5A 4USJA 2BRIA 2W21A 4JZ8A 3QVHA 2AKOA 4JZ9A 2E9YA 3QUOA 3NWYA 3C1MA 1Z9DA 2J5VA 2V5HA 1GSJA 1B7BA 3T7BA 1OHBA 3WWNA 2RD5A 3LL9A 4I49A 4OLCA 3ZZIA 3EK6A 3K4OA 3QVFA 3ZZHA 2WE4A 3D2MA 2R98A 4AXSA 4AB7A 3KZFA 3AAWA 3K4YA 2V4YA 4A7XA 3S6KA 2WE5A 3AB2A 3LL5A 3D41A 2BNEA 3C1NA 2JI5A 3QUNA 3ZZGA 3WWMA 2HMFA 4NDPA 4F6TA 3C20A
chains in the Genus database with same CATH topology
2J0WA 3L76A 2J5TA 3QURA 2JJXA 2R8VA 4NDRA 2J0XA 3D2PA 2AP9A 2J4JA 2WXBA 3TVIA 3K52A 2BMUA 3S6HA 2VA1A 3D40A 4NDPB 4F6TB 3S6GA 1E19A 4KZTA 1GS5A 2BRXA 2J4KA 1OHAA 4A7WA 3B8GA 4NDRB 2OGXB 2BUFA 2CDQA 4NDQA 2OGXA 4NDOA 4Q1TA 3L86A 2A1FA 3LKKA 3ZZFA 1OH9A 3AB4A 2JJ4A 2BTYA 3U6UA 3K56A 2BNFA 2X2WA 4JZ7A 2IJ9A 1YBDA 2BNDA 4NDQB 2J4LA 4NDOB 3EK5A 4USJA 2BRIA 2W21A 4JZ8A 3QVHA 2AKOA 4JZ9A 2E9YA 3QUOA 3NWYA 3C1MA 1Z9DA 2J5VA 2V5HA 1GSJA 1B7BA 3T7BA 1OHBA 3WWNA 2RD5A 3LL9A 4I49A 4OLCA 3ZZIA 3EK6A 3K4OA 3QVFA 3ZZHA 2WE4A 3D2MA 2R98A 4AXSA 4AB7A 3KZFA 3AAWA 3K4YA 2V4YA 4A7XA 3S6KA 2WE5A 3AB2A 3LL5A 3D41A 2BNEA 3C1NA 2JI5A 3QUNA 3ZZGA 3WWMA 2HMFA 4NDPA 4F6TA 3C20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J0W A;  3L76 A;  2J5T A;  3QUR A;  2JJX A;  2R8V A;  4NDR A;  2J0X A;  3D2P A;  2AP9 A;  2J4J A;  2WXB A;  3TVI A;  3K52 A;  2BMU A;  3S6H A;  2VA1 A;  3D40 A;  4NDP B;  4F6T B;  3S6G A;  1E19 A;  4KZT A;  1GS5 A;  2BRX A;  2J4K A;  1OHA A;  4A7W A;  3B8G A;  4NDR B;  2OGX B;  2BUF A;  2CDQ A;  4NDQ A;  2OGX A;  4NDO A;  4Q1T A;  3L86 A;  2A1F A;  3LKK A;  3ZZF A;  1OH9 A;  3AB4 A;  2JJ4 A;  2BTY A;  3U6U A;  3K56 A;  2BNF A;  2X2W A;  4JZ7 A;  2IJ9 A;  1YBD A;  2BND A;  4NDQ B;  2J4L A;  4NDO B;  3EK5 A;  4USJ A;  2BRI A;  2W21 A;  4JZ8 A;  3QVH A;  2AKO A;  4JZ9 A;  2E9Y A;  3QUO A;  3NWY A;  3C1M A;  1Z9D A;  2J5V A;  2V5H A;  1GSJ A;  1B7B A;  3T7B A;  1OHB A;  3WWN A;  2RD5 A;  3LL9 A;  4I49 A;  4OLC A;  3ZZI A;  3EK6 A;  3K4O A;  3QVF A;  3ZZH A;  2WE4 A;  3D2M A;  2R98 A;  4AXS A;  4AB7 A;  3KZF A;  3AAW A;  3K4Y A;  2V4Y A;  4A7X A;  3S6K A;  2WE5 A;  3AB2 A;  3LL5 A;  3D41 A;  2BNE A;  3C1N A;  2JI5 A;  3QUN A;  3ZZG A;  3WWM A;  2HMF A;  4NDP A;  4F6T A;  3C20 A; 
#chains in the Genus database with same CATH topology
 2J0W A;  3L76 A;  2J5T A;  3QUR A;  2JJX A;  2R8V A;  4NDR A;  2J0X A;  3D2P A;  2AP9 A;  2J4J A;  2WXB A;  3TVI A;  3K52 A;  2BMU A;  3S6H A;  2VA1 A;  3D40 A;  4NDP B;  4F6T B;  3S6G A;  1E19 A;  4KZT A;  1GS5 A;  2BRX A;  2J4K A;  1OHA A;  4A7W A;  3B8G A;  4NDR B;  2OGX B;  2BUF A;  2CDQ A;  4NDQ A;  2OGX A;  4NDO A;  4Q1T A;  3L86 A;  2A1F A;  3LKK A;  3ZZF A;  1OH9 A;  3AB4 A;  2JJ4 A;  2BTY A;  3U6U A;  3K56 A;  2BNF A;  2X2W A;  4JZ7 A;  2IJ9 A;  1YBD A;  2BND A;  4NDQ B;  2J4L A;  4NDO B;  3EK5 A;  4USJ A;  2BRI A;  2W21 A;  4JZ8 A;  3QVH A;  2AKO A;  4JZ9 A;  2E9Y A;  3QUO A;  3NWY A;  3C1M A;  1Z9D A;  2J5V A;  2V5H A;  1GSJ A;  1B7B A;  3T7B A;  1OHB A;  3WWN A;  2RD5 A;  3LL9 A;  4I49 A;  4OLC A;  3ZZI A;  3EK6 A;  3K4O A;  3QVF A;  3ZZH A;  2WE4 A;  3D2M A;  2R98 A;  4AXS A;  4AB7 A;  3KZF A;  3AAW A;  3K4Y A;  2V4Y A;  4A7X A;  3S6K A;  2WE5 A;  3AB2 A;  3LL5 A;  3D41 A;  2BNE A;  3C1N A;  2JI5 A;  3QUN A;  3ZZG A;  3WWM A;  2HMF A;  4NDP A;  4F6T A;  3C20 A; 
#chains in the Genus database with same CATH homology
 2J0W A;  3L76 A;  2J5T A;  3QUR A;  2JJX A;  2R8V A;  4NDR A;  2J0X A;  3D2P A;  2AP9 A;  2J4J A;  2WXB A;  3TVI A;  3K52 A;  2BMU A;  3S6H A;  2VA1 A;  3D40 A;  4NDP B;  4F6T B;  3S6G A;  1E19 A;  4KZT A;  1GS5 A;  2BRX A;  2J4K A;  1OHA A;  4A7W A;  3B8G A;  4NDR B;  2OGX B;  2BUF A;  2CDQ A;  4NDQ A;  2OGX A;  4NDO A;  4Q1T A;  3L86 A;  2A1F A;  3LKK A;  3ZZF A;  1OH9 A;  3AB4 A;  2JJ4 A;  2BTY A;  3U6U A;  3K56 A;  2BNF A;  2X2W A;  4JZ7 A;  2IJ9 A;  1YBD A;  2BND A;  4NDQ B;  2J4L A;  4NDO B;  3EK5 A;  4USJ A;  2BRI A;  2W21 A;  4JZ8 A;  3QVH A;  2AKO A;  4JZ9 A;  2E9Y A;  3QUO A;  3NWY A;  3C1M A;  1Z9D A;  2J5V A;  2V5H A;  1GSJ A;  1B7B A;  3T7B A;  1OHB A;  3WWN A;  2RD5 A;  3LL9 A;  4I49 A;  4OLC A;  3ZZI A;  3EK6 A;  3K4O A;  3QVF A;  3ZZH A;  2WE4 A;  3D2M A;  2R98 A;  4AXS A;  4AB7 A;  3KZF A;  3AAW A;  3K4Y A;  2V4Y A;  4A7X A;  3S6K A;  2WE5 A;  3AB2 A;  3LL5 A;  3D41 A;  2BNE A;  3C1N A;  2JI5 A;  3QUN A;  3ZZG A;  3WWM A;  2HMF A;  4NDP A;  4F6T A;  3C20 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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