4NDOA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
molecule keywords Molybdenum storage protein subunit beta
total genus 76
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndoA00
3WWMA 4NDPA 2HMFA 3D2PA 2E9YA 3C1MA 1YBDA 4A7XA 2AKOA 3ZZHA 2V5HA 3C1NA 3EK5A 3S6HA 3U6UA 4F6TB 2OGXB 2AP9A 3ZZIA 2OGXA 2BRIA 2BTYA 3ZZGA 1OHBA 2J4KA 3S6KA 2BNFA 4OLCA 2CDQA 2BUFA 1GSJA 2A1FA 3S6GA 3K52A 4NDPB 3NWYA 3QVFA 3LL5A 2JJ4A 1B7BA 2BRXA 3QVHA 1E19A 3EK6A 4Q1TA 2V4YA 4NDRA 3AB4A 4AXSA 4AB7A 2R8VA 2VA1A 4NDOA 3LL9A 4I49A 2WE5A 2W21A 2WE4A 2J5VA 1GS5A 4A7WA 2IJ9A 3AAWA 2J5TA 3D2MA 4JZ7A 3LKKA 4NDQB 3WWNA 2RD5A 2JI5A 3K4OA 1OH9A 4USJA 4NDOB 2BNDA 2J4JA 3K56A 2JJXA 3QURA 3D40A 2J0XA 3C20A 3T7BA 3TVIA 4F6TA 3D41A 2WXBA 3ZZFA 3K4YA 1Z9DA 2BMUA 2BNEA 2R98A 4KZTA 1OHAA 2X2WA 2J4LA 3KZFA 3L86A 4NDQA 4NDRB 3L76A 3QUOA 3QUNA 4JZ9A 2J0WA 3B8GA 3AB2A 4JZ8A
chains in the Genus database with same CATH superfamily
3WWMA 4NDPA 2HMFA 3D2PA 2E9YA 3C1MA 1YBDA 4A7XA 2AKOA 3ZZHA 2V5HA 3C1NA 3EK5A 3S6HA 3U6UA 4F6TB 2OGXB 2AP9A 3ZZIA 2OGXA 2BRIA 2BTYA 3ZZGA 1OHBA 2J4KA 3S6KA 2BNFA 4OLCA 2CDQA 2BUFA 1GSJA 2A1FA 3S6GA 3K52A 4NDPB 3NWYA 3QVFA 3LL5A 2JJ4A 1B7BA 2BRXA 3QVHA 1E19A 3EK6A 4Q1TA 2V4YA 4NDRA 3AB4A 4AXSA 4AB7A 2R8VA 2VA1A 4NDOA 3LL9A 4I49A 2WE5A 2W21A 2WE4A 2J5VA 1GS5A 4A7WA 2IJ9A 3AAWA 2J5TA 3D2MA 4JZ7A 3LKKA 4NDQB 3WWNA 2RD5A 2JI5A 3K4OA 1OH9A 4USJA 4NDOB 2BNDA 2J4JA 3K56A 2JJXA 3QURA 3D40A 2J0XA 3C20A 3T7BA 3TVIA 4F6TA 3D41A 2WXBA 3ZZFA 3K4YA 1Z9DA 2BMUA 2BNEA 2R98A 4KZTA 1OHAA 2X2WA 2J4LA 3KZFA 3L86A 4NDQA 4NDRB 3L76A 3QUOA 3QUNA 4JZ9A 2J0WA 3B8GA 3AB2A 4JZ8A
chains in the Genus database with same CATH topology
3WWMA 4NDPA 2HMFA 3D2PA 2E9YA 3C1MA 1YBDA 4A7XA 2AKOA 3ZZHA 2V5HA 3C1NA 3EK5A 3S6HA 3U6UA 4F6TB 2OGXB 2AP9A 3ZZIA 2OGXA 2BRIA 2BTYA 3ZZGA 1OHBA 2J4KA 3S6KA 2BNFA 4OLCA 2CDQA 2BUFA 1GSJA 2A1FA 3S6GA 3K52A 4NDPB 3NWYA 3QVFA 3LL5A 2JJ4A 1B7BA 2BRXA 3QVHA 1E19A 3EK6A 4Q1TA 2V4YA 4NDRA 3AB4A 4AXSA 4AB7A 2R8VA 2VA1A 4NDOA 3LL9A 4I49A 2WE5A 2W21A 2WE4A 2J5VA 1GS5A 4A7WA 2IJ9A 3AAWA 2J5TA 3D2MA 4JZ7A 3LKKA 4NDQB 3WWNA 2RD5A 2JI5A 3K4OA 1OH9A 4USJA 4NDOB 2BNDA 2J4JA 3K56A 2JJXA 3QURA 3D40A 2J0XA 3C20A 3T7BA 3TVIA 4F6TA 3D41A 2WXBA 3ZZFA 3K4YA 1Z9DA 2BMUA 2BNEA 2R98A 4KZTA 1OHAA 2X2WA 2J4LA 3KZFA 3L86A 4NDQA 4NDRB 3L76A 3QUOA 3QUNA 4JZ9A 2J0WA 3B8GA 3AB2A 4JZ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WWM A;  4NDP A;  2HMF A;  3D2P A;  2E9Y A;  3C1M A;  1YBD A;  4A7X A;  2AKO A;  3ZZH A;  2V5H A;  3C1N A;  3EK5 A;  3S6H A;  3U6U A;  4F6T B;  2OGX B;  2AP9 A;  3ZZI A;  2OGX A;  2BRI A;  2BTY A;  3ZZG A;  1OHB A;  2J4K A;  3S6K A;  2BNF A;  4OLC A;  2CDQ A;  2BUF A;  1GSJ A;  2A1F A;  3S6G A;  3K52 A;  4NDP B;  3NWY A;  3QVF A;  3LL5 A;  2JJ4 A;  1B7B A;  2BRX A;  3QVH A;  1E19 A;  3EK6 A;  4Q1T A;  2V4Y A;  4NDR A;  3AB4 A;  4AXS A;  4AB7 A;  2R8V A;  2VA1 A;  4NDO A;  3LL9 A;  4I49 A;  2WE5 A;  2W21 A;  2WE4 A;  2J5V A;  1GS5 A;  4A7W A;  2IJ9 A;  3AAW A;  2J5T A;  3D2M A;  4JZ7 A;  3LKK A;  4NDQ B;  3WWN A;  2RD5 A;  2JI5 A;  3K4O A;  1OH9 A;  4USJ A;  4NDO B;  2BND A;  2J4J A;  3K56 A;  2JJX A;  3QUR A;  3D40 A;  2J0X A;  3C20 A;  3T7B A;  3TVI A;  4F6T A;  3D41 A;  2WXB A;  3ZZF A;  3K4Y A;  1Z9D A;  2BMU A;  2BNE A;  2R98 A;  4KZT A;  1OHA A;  2X2W A;  2J4L A;  3KZF A;  3L86 A;  4NDQ A;  4NDR B;  3L76 A;  3QUO A;  3QUN A;  4JZ9 A;  2J0W A;  3B8G A;  3AB2 A;  4JZ8 A; 
#chains in the Genus database with same CATH topology
 3WWM A;  4NDP A;  2HMF A;  3D2P A;  2E9Y A;  3C1M A;  1YBD A;  4A7X A;  2AKO A;  3ZZH A;  2V5H A;  3C1N A;  3EK5 A;  3S6H A;  3U6U A;  4F6T B;  2OGX B;  2AP9 A;  3ZZI A;  2OGX A;  2BRI A;  2BTY A;  3ZZG A;  1OHB A;  2J4K A;  3S6K A;  2BNF A;  4OLC A;  2CDQ A;  2BUF A;  1GSJ A;  2A1F A;  3S6G A;  3K52 A;  4NDP B;  3NWY A;  3QVF A;  3LL5 A;  2JJ4 A;  1B7B A;  2BRX A;  3QVH A;  1E19 A;  3EK6 A;  4Q1T A;  2V4Y A;  4NDR A;  3AB4 A;  4AXS A;  4AB7 A;  2R8V A;  2VA1 A;  4NDO A;  3LL9 A;  4I49 A;  2WE5 A;  2W21 A;  2WE4 A;  2J5V A;  1GS5 A;  4A7W A;  2IJ9 A;  3AAW A;  2J5T A;  3D2M A;  4JZ7 A;  3LKK A;  4NDQ B;  3WWN A;  2RD5 A;  2JI5 A;  3K4O A;  1OH9 A;  4USJ A;  4NDO B;  2BND A;  2J4J A;  3K56 A;  2JJX A;  3QUR A;  3D40 A;  2J0X A;  3C20 A;  3T7B A;  3TVI A;  4F6T A;  3D41 A;  2WXB A;  3ZZF A;  3K4Y A;  1Z9D A;  2BMU A;  2BNE A;  2R98 A;  4KZT A;  1OHA A;  2X2W A;  2J4L A;  3KZF A;  3L86 A;  4NDQ A;  4NDR B;  3L76 A;  3QUO A;  3QUN A;  4JZ9 A;  2J0W A;  3B8G A;  3AB2 A;  4JZ8 A; 
#chains in the Genus database with same CATH homology
 3WWM A;  4NDP A;  2HMF A;  3D2P A;  2E9Y A;  3C1M A;  1YBD A;  4A7X A;  2AKO A;  3ZZH A;  2V5H A;  3C1N A;  3EK5 A;  3S6H A;  3U6U A;  4F6T B;  2OGX B;  2AP9 A;  3ZZI A;  2OGX A;  2BRI A;  2BTY A;  3ZZG A;  1OHB A;  2J4K A;  3S6K A;  2BNF A;  4OLC A;  2CDQ A;  2BUF A;  1GSJ A;  2A1F A;  3S6G A;  3K52 A;  4NDP B;  3NWY A;  3QVF A;  3LL5 A;  2JJ4 A;  1B7B A;  2BRX A;  3QVH A;  1E19 A;  3EK6 A;  4Q1T A;  2V4Y A;  4NDR A;  3AB4 A;  4AXS A;  4AB7 A;  2R8V A;  2VA1 A;  4NDO A;  3LL9 A;  4I49 A;  2WE5 A;  2W21 A;  2WE4 A;  2J5V A;  1GS5 A;  4A7W A;  2IJ9 A;  3AAW A;  2J5T A;  3D2M A;  4JZ7 A;  3LKK A;  4NDQ B;  3WWN A;  2RD5 A;  2JI5 A;  3K4O A;  1OH9 A;  4USJ A;  4NDO B;  2BND A;  2J4J A;  3K56 A;  2JJX A;  3QUR A;  3D40 A;  2J0X A;  3C20 A;  3T7B A;  3TVI A;  4F6T A;  3D41 A;  2WXB A;  3ZZF A;  3K4Y A;  1Z9D A;  2BMU A;  2BNE A;  2R98 A;  4KZT A;  1OHA A;  2X2W A;  2J4L A;  3KZF A;  3L86 A;  4NDQ A;  4NDR B;  3L76 A;  3QUO A;  3QUN A;  4JZ9 A;  2J0W A;  3B8G A;  3AB2 A;  4JZ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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