4NDOA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule keywords Molybdenum storage protein subunit beta
total genus 76
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndoA00
3S6HA 3K52A 2WXBA 2J4KA 4USJA 3K4OA 4NDRB 4A7XA 3ZZIA 3LL5A 2J0XA 2V4YA 4NDOA 3EK5A 3QUNA 3U6UA 3EK6A 2HMFA 1GSJA 1GS5A 2IJ9A 3T7BA 3L76A 2RD5A 4NDQB 1OHAA 2AP9A 2JJXA 3C20A 3QVFA 4F6TA 4OLCA 3AAWA 3ZZFA 3QVHA 2CDQA 3NWYA 3ZZHA 1OH9A 2J0WA 3TVIA 4JZ9A 4NDOB 3QURA 2VA1A 3D2PA 3LKKA 2R8VA 2R98A 4KZTA 2E9YA 4NDPA 2WE5A 3C1NA 2JJ4A 2V5HA 4JZ7A 4NDRA 2BRIA 2BMUA 3WWNA 4AXSA 3AB2A 2J4LA 3K56A 4Q1TA 3S6KA 3ZZGA 4F6TB 2BRXA 4AB7A 4A7WA 3D41A 2A1FA 2OGXA 1YBDA 1E19A 1B7BA 2X2WA 3D40A 3AB4A 2AKOA 3C1MA 3S6GA 1OHBA 3L86A 1Z9DA 3LL9A 4NDPB 2JI5A 2BNEA 4I49A 3B8GA 3QUOA 2BTYA 2W21A 2J5VA 3WWMA 3D2MA 2BUFA 3K4YA 2OGXB 2J4JA 2J5TA 2BNFA 3KZFA 2BNDA 4JZ8A 4NDQA 2WE4A
chains in the Genus database with same CATH superfamily
3S6HA 3K52A 2WXBA 2J4KA 4USJA 3K4OA 4NDRB 4A7XA 3ZZIA 3LL5A 2J0XA 2V4YA 4NDOA 3EK5A 3QUNA 3U6UA 3EK6A 2HMFA 1GSJA 1GS5A 2IJ9A 3T7BA 3L76A 2RD5A 4NDQB 1OHAA 2AP9A 2JJXA 3C20A 3QVFA 4F6TA 4OLCA 3AAWA 3ZZFA 3QVHA 2CDQA 3NWYA 3ZZHA 1OH9A 2J0WA 3TVIA 4JZ9A 4NDOB 3QURA 2VA1A 3D2PA 3LKKA 2R8VA 2R98A 4KZTA 2E9YA 4NDPA 2WE5A 3C1NA 2JJ4A 2V5HA 4JZ7A 4NDRA 2BRIA 2BMUA 3WWNA 4AXSA 3AB2A 2J4LA 3K56A 4Q1TA 3S6KA 3ZZGA 4F6TB 2BRXA 4AB7A 4A7WA 3D41A 2A1FA 2OGXA 1YBDA 1E19A 1B7BA 2X2WA 3D40A 3AB4A 2AKOA 3C1MA 3S6GA 1OHBA 3L86A 1Z9DA 3LL9A 4NDPB 2JI5A 2BNEA 4I49A 3B8GA 3QUOA 2BTYA 2W21A 2J5VA 3WWMA 3D2MA 2BUFA 3K4YA 2OGXB 2J4JA 2J5TA 2BNFA 3KZFA 2BNDA 4JZ8A 4NDQA 2WE4A
chains in the Genus database with same CATH topology
3S6HA 3K52A 2WXBA 2J4KA 4USJA 3K4OA 4NDRB 4A7XA 3ZZIA 3LL5A 2J0XA 2V4YA 4NDOA 3EK5A 3QUNA 3U6UA 3EK6A 2HMFA 1GSJA 1GS5A 2IJ9A 3T7BA 3L76A 2RD5A 4NDQB 1OHAA 2AP9A 2JJXA 3C20A 3QVFA 4F6TA 4OLCA 3AAWA 3ZZFA 3QVHA 2CDQA 3NWYA 3ZZHA 1OH9A 2J0WA 3TVIA 4JZ9A 4NDOB 3QURA 2VA1A 3D2PA 3LKKA 2R8VA 2R98A 4KZTA 2E9YA 4NDPA 2WE5A 3C1NA 2JJ4A 2V5HA 4JZ7A 4NDRA 2BRIA 2BMUA 3WWNA 4AXSA 3AB2A 2J4LA 3K56A 4Q1TA 3S6KA 3ZZGA 4F6TB 2BRXA 4AB7A 4A7WA 3D41A 2A1FA 2OGXA 1YBDA 1E19A 1B7BA 2X2WA 3D40A 3AB4A 2AKOA 3C1MA 3S6GA 1OHBA 3L86A 1Z9DA 3LL9A 4NDPB 2JI5A 2BNEA 4I49A 3B8GA 3QUOA 2BTYA 2W21A 2J5VA 3WWMA 3D2MA 2BUFA 3K4YA 2OGXB 2J4JA 2J5TA 2BNFA 3KZFA 2BNDA 4JZ8A 4NDQA 2WE4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S6H A;  3K52 A;  2WXB A;  2J4K A;  4USJ A;  3K4O A;  4NDR B;  4A7X A;  3ZZI A;  3LL5 A;  2J0X A;  2V4Y A;  4NDO A;  3EK5 A;  3QUN A;  3U6U A;  3EK6 A;  2HMF A;  1GSJ A;  1GS5 A;  2IJ9 A;  3T7B A;  3L76 A;  2RD5 A;  4NDQ B;  1OHA A;  2AP9 A;  2JJX A;  3C20 A;  3QVF A;  4F6T A;  4OLC A;  3AAW A;  3ZZF A;  3QVH A;  2CDQ A;  3NWY A;  3ZZH A;  1OH9 A;  2J0W A;  3TVI A;  4JZ9 A;  4NDO B;  3QUR A;  2VA1 A;  3D2P A;  3LKK A;  2R8V A;  2R98 A;  4KZT A;  2E9Y A;  4NDP A;  2WE5 A;  3C1N A;  2JJ4 A;  2V5H A;  4JZ7 A;  4NDR A;  2BRI A;  2BMU A;  3WWN A;  4AXS A;  3AB2 A;  2J4L A;  3K56 A;  4Q1T A;  3S6K A;  3ZZG A;  4F6T B;  2BRX A;  4AB7 A;  4A7W A;  3D41 A;  2A1F A;  2OGX A;  1YBD A;  1E19 A;  1B7B A;  2X2W A;  3D40 A;  3AB4 A;  2AKO A;  3C1M A;  3S6G A;  1OHB A;  3L86 A;  1Z9D A;  3LL9 A;  4NDP B;  2JI5 A;  2BNE A;  4I49 A;  3B8G A;  3QUO A;  2BTY A;  2W21 A;  2J5V A;  3WWM A;  3D2M A;  2BUF A;  3K4Y A;  2OGX B;  2J4J A;  2J5T A;  2BNF A;  3KZF A;  2BND A;  4JZ8 A;  4NDQ A;  2WE4 A; 
#chains in the Genus database with same CATH topology
 3S6H A;  3K52 A;  2WXB A;  2J4K A;  4USJ A;  3K4O A;  4NDR B;  4A7X A;  3ZZI A;  3LL5 A;  2J0X A;  2V4Y A;  4NDO A;  3EK5 A;  3QUN A;  3U6U A;  3EK6 A;  2HMF A;  1GSJ A;  1GS5 A;  2IJ9 A;  3T7B A;  3L76 A;  2RD5 A;  4NDQ B;  1OHA A;  2AP9 A;  2JJX A;  3C20 A;  3QVF A;  4F6T A;  4OLC A;  3AAW A;  3ZZF A;  3QVH A;  2CDQ A;  3NWY A;  3ZZH A;  1OH9 A;  2J0W A;  3TVI A;  4JZ9 A;  4NDO B;  3QUR A;  2VA1 A;  3D2P A;  3LKK A;  2R8V A;  2R98 A;  4KZT A;  2E9Y A;  4NDP A;  2WE5 A;  3C1N A;  2JJ4 A;  2V5H A;  4JZ7 A;  4NDR A;  2BRI A;  2BMU A;  3WWN A;  4AXS A;  3AB2 A;  2J4L A;  3K56 A;  4Q1T A;  3S6K A;  3ZZG A;  4F6T B;  2BRX A;  4AB7 A;  4A7W A;  3D41 A;  2A1F A;  2OGX A;  1YBD A;  1E19 A;  1B7B A;  2X2W A;  3D40 A;  3AB4 A;  2AKO A;  3C1M A;  3S6G A;  1OHB A;  3L86 A;  1Z9D A;  3LL9 A;  4NDP B;  2JI5 A;  2BNE A;  4I49 A;  3B8G A;  3QUO A;  2BTY A;  2W21 A;  2J5V A;  3WWM A;  3D2M A;  2BUF A;  3K4Y A;  2OGX B;  2J4J A;  2J5T A;  2BNF A;  3KZF A;  2BND A;  4JZ8 A;  4NDQ A;  2WE4 A; 
#chains in the Genus database with same CATH homology
 3S6H A;  3K52 A;  2WXB A;  2J4K A;  4USJ A;  3K4O A;  4NDR B;  4A7X A;  3ZZI A;  3LL5 A;  2J0X A;  2V4Y A;  4NDO A;  3EK5 A;  3QUN A;  3U6U A;  3EK6 A;  2HMF A;  1GSJ A;  1GS5 A;  2IJ9 A;  3T7B A;  3L76 A;  2RD5 A;  4NDQ B;  1OHA A;  2AP9 A;  2JJX A;  3C20 A;  3QVF A;  4F6T A;  4OLC A;  3AAW A;  3ZZF A;  3QVH A;  2CDQ A;  3NWY A;  3ZZH A;  1OH9 A;  2J0W A;  3TVI A;  4JZ9 A;  4NDO B;  3QUR A;  2VA1 A;  3D2P A;  3LKK A;  2R8V A;  2R98 A;  4KZT A;  2E9Y A;  4NDP A;  2WE5 A;  3C1N A;  2JJ4 A;  2V5H A;  4JZ7 A;  4NDR A;  2BRI A;  2BMU A;  3WWN A;  4AXS A;  3AB2 A;  2J4L A;  3K56 A;  4Q1T A;  3S6K A;  3ZZG A;  4F6T B;  2BRX A;  4AB7 A;  4A7W A;  3D41 A;  2A1F A;  2OGX A;  1YBD A;  1E19 A;  1B7B A;  2X2W A;  3D40 A;  3AB4 A;  2AKO A;  3C1M A;  3S6G A;  1OHB A;  3L86 A;  1Z9D A;  3LL9 A;  4NDP B;  2JI5 A;  2BNE A;  4I49 A;  3B8G A;  3QUO A;  2BTY A;  2W21 A;  2J5V A;  3WWM A;  3D2M A;  2BUF A;  3K4Y A;  2OGX B;  2J4J A;  2J5T A;  2BNF A;  3KZF A;  2BND A;  4JZ8 A;  4NDQ A;  2WE4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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