4NDQA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
245
structure length
245
Chain Sequence
b'KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Molybdenum storage protein subunit beta
publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
total genus 80
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndqA00
3ZZIA 2JJ4A 4A7XA 3AAWA 4NDRA 2OGXB 3TVIA 3S6HA 3T7BA 3U6UA 2JI5A 2WE4A 4NDQB 2BNEA 4JZ7A 3S6KA 2J5VA 3EK5A 2V5HA 3KZFA 3K52A 2BNFA 3ZZFA 2JJXA 2X2WA 4NDPA 3B8GA 1Z9DA 3LL9A 3QUOA 2R98A 2BUFA 2R8VA 3C20A 3D2PA 3S6GA 2HMFA 1OH9A 3NWYA 4AXSA 4NDRB 4KZTA 2AP9A 4A7WA 2J0WA 3K4YA 3D40A 4I49A 1OHAA 3EK6A 1GS5A 3QUNA 2A1FA 2J4KA 3LL5A 2VA1A 2E9YA 4F6TA 2IJ9A 4NDPB 4OLCA 2BMUA 1E19A 2RD5A 2AKOA 3WWMA 4NDOA 2J5TA 2CDQA 2BNDA 3QURA 4JZ9A 3K56A 3WWNA 1YBDA 2WXBA 3AB4A 3ZZGA 3QVFA 1GSJA 2J4JA 3K4OA 2OGXA 2V4YA 3C1NA 4AB7A 4F6TB 3LKKA 4USJA 4JZ8A 4NDQA 3ZZHA 2BTYA 4Q1TA 3L86A 3D2MA 2J4LA 3C1MA 3D41A 1OHBA 2WE5A 4NDOB 2BRIA 2BRXA 3AB2A 3QVHA 3L76A 1B7BA 2J0XA 2W21A
chains in the Genus database with same CATH superfamily
3ZZIA 2JJ4A 4A7XA 3AAWA 4NDRA 2OGXB 3TVIA 3S6HA 3T7BA 3U6UA 2JI5A 2WE4A 4NDQB 2BNEA 4JZ7A 3S6KA 2J5VA 3EK5A 2V5HA 3KZFA 3K52A 2BNFA 3ZZFA 2JJXA 2X2WA 4NDPA 3B8GA 1Z9DA 3LL9A 3QUOA 2R98A 2BUFA 2R8VA 3C20A 3D2PA 3S6GA 2HMFA 1OH9A 3NWYA 4AXSA 4NDRB 4KZTA 2AP9A 4A7WA 2J0WA 3K4YA 3D40A 4I49A 1OHAA 3EK6A 1GS5A 3QUNA 2A1FA 2J4KA 3LL5A 2VA1A 2E9YA 4F6TA 2IJ9A 4NDPB 4OLCA 2BMUA 1E19A 2RD5A 2AKOA 3WWMA 4NDOA 2J5TA 2CDQA 2BNDA 3QURA 4JZ9A 3K56A 3WWNA 1YBDA 2WXBA 3AB4A 3ZZGA 3QVFA 1GSJA 2J4JA 3K4OA 2OGXA 2V4YA 3C1NA 4AB7A 4F6TB 3LKKA 4USJA 4JZ8A 4NDQA 3ZZHA 2BTYA 4Q1TA 3L86A 3D2MA 2J4LA 3C1MA 3D41A 1OHBA 2WE5A 4NDOB 2BRIA 2BRXA 3AB2A 3QVHA 3L76A 1B7BA 2J0XA 2W21A
chains in the Genus database with same CATH topology
3ZZIA 2JJ4A 4A7XA 3AAWA 4NDRA 2OGXB 3TVIA 3S6HA 3T7BA 3U6UA 2JI5A 2WE4A 4NDQB 2BNEA 4JZ7A 3S6KA 2J5VA 3EK5A 2V5HA 3KZFA 3K52A 2BNFA 3ZZFA 2JJXA 2X2WA 4NDPA 3B8GA 1Z9DA 3LL9A 3QUOA 2R98A 2BUFA 2R8VA 3C20A 3D2PA 3S6GA 2HMFA 1OH9A 3NWYA 4AXSA 4NDRB 4KZTA 2AP9A 4A7WA 2J0WA 3K4YA 3D40A 4I49A 1OHAA 3EK6A 1GS5A 3QUNA 2A1FA 2J4KA 3LL5A 2VA1A 2E9YA 4F6TA 2IJ9A 4NDPB 4OLCA 2BMUA 1E19A 2RD5A 2AKOA 3WWMA 4NDOA 2J5TA 2CDQA 2BNDA 3QURA 4JZ9A 3K56A 3WWNA 1YBDA 2WXBA 3AB4A 3ZZGA 3QVFA 1GSJA 2J4JA 3K4OA 2OGXA 2V4YA 3C1NA 4AB7A 4F6TB 3LKKA 4USJA 4JZ8A 4NDQA 3ZZHA 2BTYA 4Q1TA 3L86A 3D2MA 2J4LA 3C1MA 3D41A 1OHBA 2WE5A 4NDOB 2BRIA 2BRXA 3AB2A 3QVHA 3L76A 1B7BA 2J0XA 2W21A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZZI A;  2JJ4 A;  4A7X A;  3AAW A;  4NDR A;  2OGX B;  3TVI A;  3S6H A;  3T7B A;  3U6U A;  2JI5 A;  2WE4 A;  4NDQ B;  2BNE A;  4JZ7 A;  3S6K A;  2J5V A;  3EK5 A;  2V5H A;  3KZF A;  3K52 A;  2BNF A;  3ZZF A;  2JJX A;  2X2W A;  4NDP A;  3B8G A;  1Z9D A;  3LL9 A;  3QUO A;  2R98 A;  2BUF A;  2R8V A;  3C20 A;  3D2P A;  3S6G A;  2HMF A;  1OH9 A;  3NWY A;  4AXS A;  4NDR B;  4KZT A;  2AP9 A;  4A7W A;  2J0W A;  3K4Y A;  3D40 A;  4I49 A;  1OHA A;  3EK6 A;  1GS5 A;  3QUN A;  2A1F A;  2J4K A;  3LL5 A;  2VA1 A;  2E9Y A;  4F6T A;  2IJ9 A;  4NDP B;  4OLC A;  2BMU A;  1E19 A;  2RD5 A;  2AKO A;  3WWM A;  4NDO A;  2J5T A;  2CDQ A;  2BND A;  3QUR A;  4JZ9 A;  3K56 A;  3WWN A;  1YBD A;  2WXB A;  3AB4 A;  3ZZG A;  3QVF A;  1GSJ A;  2J4J A;  3K4O A;  2OGX A;  2V4Y A;  3C1N A;  4AB7 A;  4F6T B;  3LKK A;  4USJ A;  4JZ8 A;  4NDQ A;  3ZZH A;  2BTY A;  4Q1T A;  3L86 A;  3D2M A;  2J4L A;  3C1M A;  3D41 A;  1OHB A;  2WE5 A;  4NDO B;  2BRI A;  2BRX A;  3AB2 A;  3QVH A;  3L76 A;  1B7B A;  2J0X A;  2W21 A; 
#chains in the Genus database with same CATH topology
 3ZZI A;  2JJ4 A;  4A7X A;  3AAW A;  4NDR A;  2OGX B;  3TVI A;  3S6H A;  3T7B A;  3U6U A;  2JI5 A;  2WE4 A;  4NDQ B;  2BNE A;  4JZ7 A;  3S6K A;  2J5V A;  3EK5 A;  2V5H A;  3KZF A;  3K52 A;  2BNF A;  3ZZF A;  2JJX A;  2X2W A;  4NDP A;  3B8G A;  1Z9D A;  3LL9 A;  3QUO A;  2R98 A;  2BUF A;  2R8V A;  3C20 A;  3D2P A;  3S6G A;  2HMF A;  1OH9 A;  3NWY A;  4AXS A;  4NDR B;  4KZT A;  2AP9 A;  4A7W A;  2J0W A;  3K4Y A;  3D40 A;  4I49 A;  1OHA A;  3EK6 A;  1GS5 A;  3QUN A;  2A1F A;  2J4K A;  3LL5 A;  2VA1 A;  2E9Y A;  4F6T A;  2IJ9 A;  4NDP B;  4OLC A;  2BMU A;  1E19 A;  2RD5 A;  2AKO A;  3WWM A;  4NDO A;  2J5T A;  2CDQ A;  2BND A;  3QUR A;  4JZ9 A;  3K56 A;  3WWN A;  1YBD A;  2WXB A;  3AB4 A;  3ZZG A;  3QVF A;  1GSJ A;  2J4J A;  3K4O A;  2OGX A;  2V4Y A;  3C1N A;  4AB7 A;  4F6T B;  3LKK A;  4USJ A;  4JZ8 A;  4NDQ A;  3ZZH A;  2BTY A;  4Q1T A;  3L86 A;  3D2M A;  2J4L A;  3C1M A;  3D41 A;  1OHB A;  2WE5 A;  4NDO B;  2BRI A;  2BRX A;  3AB2 A;  3QVH A;  3L76 A;  1B7B A;  2J0X A;  2W21 A; 
#chains in the Genus database with same CATH homology
 3ZZI A;  2JJ4 A;  4A7X A;  3AAW A;  4NDR A;  2OGX B;  3TVI A;  3S6H A;  3T7B A;  3U6U A;  2JI5 A;  2WE4 A;  4NDQ B;  2BNE A;  4JZ7 A;  3S6K A;  2J5V A;  3EK5 A;  2V5H A;  3KZF A;  3K52 A;  2BNF A;  3ZZF A;  2JJX A;  2X2W A;  4NDP A;  3B8G A;  1Z9D A;  3LL9 A;  3QUO A;  2R98 A;  2BUF A;  2R8V A;  3C20 A;  3D2P A;  3S6G A;  2HMF A;  1OH9 A;  3NWY A;  4AXS A;  4NDR B;  4KZT A;  2AP9 A;  4A7W A;  2J0W A;  3K4Y A;  3D40 A;  4I49 A;  1OHA A;  3EK6 A;  1GS5 A;  3QUN A;  2A1F A;  2J4K A;  3LL5 A;  2VA1 A;  2E9Y A;  4F6T A;  2IJ9 A;  4NDP B;  4OLC A;  2BMU A;  1E19 A;  2RD5 A;  2AKO A;  3WWM A;  4NDO A;  2J5T A;  2CDQ A;  2BND A;  3QUR A;  4JZ9 A;  3K56 A;  3WWN A;  1YBD A;  2WXB A;  3AB4 A;  3ZZG A;  3QVF A;  1GSJ A;  2J4J A;  3K4O A;  2OGX A;  2V4Y A;  3C1N A;  4AB7 A;  4F6T B;  3LKK A;  4USJ A;  4JZ8 A;  4NDQ A;  3ZZH A;  2BTY A;  4Q1T A;  3L86 A;  3D2M A;  2J4L A;  3C1M A;  3D41 A;  1OHB A;  2WE5 A;  4NDO B;  2BRI A;  2BRX A;  3AB2 A;  3QVH A;  3L76 A;  1B7B A;  2J0X A;  2W21 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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