4NDQA

Crystal structure molybdenum storage protein with fully mo-loaded cavity
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
245
structure length
245
Chain Sequence
KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Molybdenum storage protein subunit beta
publication title Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
pubmed doi rcsb
molecule tags Metal binding protein
total genus 80
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2013-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4ndqA00
2WE5A 4NDRA 2BRXA 4NDOA 2A1FA 3K4YA 2RD5A 3C1NA 2AKOA 4JZ8A 4KZTA 3QVFA 4NDQB 2JJ4A 3KZFA 4NDOB 3EK6A 3B8GA 3K4OA 3K56A 3ZZHA 3D2MA 3WWNA 4OLCA 3EK5A 1GS5A 3ZZGA 1OHAA 3AB4A 2V5HA 2W21A 2R98A 3L86A 3C1MA 2J5TA 2E9YA 3LL5A 4NDRB 4NDPA 3D41A 3ZZFA 2BNFA 2X2WA 3S6HA 2BNDA 4JZ7A 3LKKA 3QURA 4A7XA 3U6UA 3ZZIA 2J4LA 2OGXA 3WWMA 2J4KA 4NDPB 2WXBA 4F6TA 2J0WA 4Q1TA 3K52A 2VA1A 4A7WA 3S6GA 3T7BA 3NWYA 3QUOA 3S6KA 2HMFA 4AXSA 1Z9DA 1E19A 2BNEA 1OH9A 2OGXB 2J0XA 3D2PA 4JZ9A 4F6TB 3TVIA 2IJ9A 2J5VA 2J4JA 3QVHA 2BUFA 2R8VA 3AAWA 1B7BA 4USJA 2WE4A 2JI5A 3QUNA 4NDQA 3AB2A 3L76A 4I49A 2BTYA 4AB7A 1YBDA 2BRIA 2AP9A 1GSJA 2BMUA 3LL9A 3D40A 3C20A 2JJXA 2V4YA 1OHBA 2CDQA
chains in the Genus database with same CATH superfamily
2WE5A 4NDRA 2BRXA 4NDOA 2A1FA 3K4YA 2RD5A 3C1NA 2AKOA 4JZ8A 4KZTA 3QVFA 4NDQB 2JJ4A 3KZFA 4NDOB 3EK6A 3B8GA 3K4OA 3K56A 3ZZHA 3D2MA 3WWNA 4OLCA 3EK5A 1GS5A 3ZZGA 1OHAA 3AB4A 2V5HA 2W21A 2R98A 3L86A 3C1MA 2J5TA 2E9YA 3LL5A 4NDRB 4NDPA 3D41A 3ZZFA 2BNFA 2X2WA 3S6HA 2BNDA 4JZ7A 3LKKA 3QURA 4A7XA 3U6UA 3ZZIA 2J4LA 2OGXA 3WWMA 2J4KA 4NDPB 2WXBA 4F6TA 2J0WA 4Q1TA 3K52A 2VA1A 4A7WA 3S6GA 3T7BA 3NWYA 3QUOA 3S6KA 2HMFA 4AXSA 1Z9DA 1E19A 2BNEA 1OH9A 2OGXB 2J0XA 3D2PA 4JZ9A 4F6TB 3TVIA 2IJ9A 2J5VA 2J4JA 3QVHA 2BUFA 2R8VA 3AAWA 1B7BA 4USJA 2WE4A 2JI5A 3QUNA 4NDQA 3AB2A 3L76A 4I49A 2BTYA 4AB7A 1YBDA 2BRIA 2AP9A 1GSJA 2BMUA 3LL9A 3D40A 3C20A 2JJXA 2V4YA 1OHBA 2CDQA
chains in the Genus database with same CATH topology
2WE5A 4NDRA 2BRXA 4NDOA 2A1FA 3K4YA 2RD5A 3C1NA 2AKOA 4JZ8A 4KZTA 3QVFA 4NDQB 2JJ4A 3KZFA 4NDOB 3EK6A 3B8GA 3K4OA 3K56A 3ZZHA 3D2MA 3WWNA 4OLCA 3EK5A 1GS5A 3ZZGA 1OHAA 3AB4A 2V5HA 2W21A 2R98A 3L86A 3C1MA 2J5TA 2E9YA 3LL5A 4NDRB 4NDPA 3D41A 3ZZFA 2BNFA 2X2WA 3S6HA 2BNDA 4JZ7A 3LKKA 3QURA 4A7XA 3U6UA 3ZZIA 2J4LA 2OGXA 3WWMA 2J4KA 4NDPB 2WXBA 4F6TA 2J0WA 4Q1TA 3K52A 2VA1A 4A7WA 3S6GA 3T7BA 3NWYA 3QUOA 3S6KA 2HMFA 4AXSA 1Z9DA 1E19A 2BNEA 1OH9A 2OGXB 2J0XA 3D2PA 4JZ9A 4F6TB 3TVIA 2IJ9A 2J5VA 2J4JA 3QVHA 2BUFA 2R8VA 3AAWA 1B7BA 4USJA 2WE4A 2JI5A 3QUNA 4NDQA 3AB2A 3L76A 4I49A 2BTYA 4AB7A 1YBDA 2BRIA 2AP9A 1GSJA 2BMUA 3LL9A 3D40A 3C20A 2JJXA 2V4YA 1OHBA 2CDQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WE5 A;  4NDR A;  2BRX A;  4NDO A;  2A1F A;  3K4Y A;  2RD5 A;  3C1N A;  2AKO A;  4JZ8 A;  4KZT A;  3QVF A;  4NDQ B;  2JJ4 A;  3KZF A;  4NDO B;  3EK6 A;  3B8G A;  3K4O A;  3K56 A;  3ZZH A;  3D2M A;  3WWN A;  4OLC A;  3EK5 A;  1GS5 A;  3ZZG A;  1OHA A;  3AB4 A;  2V5H A;  2W21 A;  2R98 A;  3L86 A;  3C1M A;  2J5T A;  2E9Y A;  3LL5 A;  4NDR B;  4NDP A;  3D41 A;  3ZZF A;  2BNF A;  2X2W A;  3S6H A;  2BND A;  4JZ7 A;  3LKK A;  3QUR A;  4A7X A;  3U6U A;  3ZZI A;  2J4L A;  2OGX A;  3WWM A;  2J4K A;  4NDP B;  2WXB A;  4F6T A;  2J0W A;  4Q1T A;  3K52 A;  2VA1 A;  4A7W A;  3S6G A;  3T7B A;  3NWY A;  3QUO A;  3S6K A;  2HMF A;  4AXS A;  1Z9D A;  1E19 A;  2BNE A;  1OH9 A;  2OGX B;  2J0X A;  3D2P A;  4JZ9 A;  4F6T B;  3TVI A;  2IJ9 A;  2J5V A;  2J4J A;  3QVH A;  2BUF A;  2R8V A;  3AAW A;  1B7B A;  4USJ A;  2WE4 A;  2JI5 A;  3QUN A;  4NDQ A;  3AB2 A;  3L76 A;  4I49 A;  2BTY A;  4AB7 A;  1YBD A;  2BRI A;  2AP9 A;  1GSJ A;  2BMU A;  3LL9 A;  3D40 A;  3C20 A;  2JJX A;  2V4Y A;  1OHB A;  2CDQ A; 
#chains in the Genus database with same CATH topology
 2WE5 A;  4NDR A;  2BRX A;  4NDO A;  2A1F A;  3K4Y A;  2RD5 A;  3C1N A;  2AKO A;  4JZ8 A;  4KZT A;  3QVF A;  4NDQ B;  2JJ4 A;  3KZF A;  4NDO B;  3EK6 A;  3B8G A;  3K4O A;  3K56 A;  3ZZH A;  3D2M A;  3WWN A;  4OLC A;  3EK5 A;  1GS5 A;  3ZZG A;  1OHA A;  3AB4 A;  2V5H A;  2W21 A;  2R98 A;  3L86 A;  3C1M A;  2J5T A;  2E9Y A;  3LL5 A;  4NDR B;  4NDP A;  3D41 A;  3ZZF A;  2BNF A;  2X2W A;  3S6H A;  2BND A;  4JZ7 A;  3LKK A;  3QUR A;  4A7X A;  3U6U A;  3ZZI A;  2J4L A;  2OGX A;  3WWM A;  2J4K A;  4NDP B;  2WXB A;  4F6T A;  2J0W A;  4Q1T A;  3K52 A;  2VA1 A;  4A7W A;  3S6G A;  3T7B A;  3NWY A;  3QUO A;  3S6K A;  2HMF A;  4AXS A;  1Z9D A;  1E19 A;  2BNE A;  1OH9 A;  2OGX B;  2J0X A;  3D2P A;  4JZ9 A;  4F6T B;  3TVI A;  2IJ9 A;  2J5V A;  2J4J A;  3QVH A;  2BUF A;  2R8V A;  3AAW A;  1B7B A;  4USJ A;  2WE4 A;  2JI5 A;  3QUN A;  4NDQ A;  3AB2 A;  3L76 A;  4I49 A;  2BTY A;  4AB7 A;  1YBD A;  2BRI A;  2AP9 A;  1GSJ A;  2BMU A;  3LL9 A;  3D40 A;  3C20 A;  2JJX A;  2V4Y A;  1OHB A;  2CDQ A; 
#chains in the Genus database with same CATH homology
 2WE5 A;  4NDR A;  2BRX A;  4NDO A;  2A1F A;  3K4Y A;  2RD5 A;  3C1N A;  2AKO A;  4JZ8 A;  4KZT A;  3QVF A;  4NDQ B;  2JJ4 A;  3KZF A;  4NDO B;  3EK6 A;  3B8G A;  3K4O A;  3K56 A;  3ZZH A;  3D2M A;  3WWN A;  4OLC A;  3EK5 A;  1GS5 A;  3ZZG A;  1OHA A;  3AB4 A;  2V5H A;  2W21 A;  2R98 A;  3L86 A;  3C1M A;  2J5T A;  2E9Y A;  3LL5 A;  4NDR B;  4NDP A;  3D41 A;  3ZZF A;  2BNF A;  2X2W A;  3S6H A;  2BND A;  4JZ7 A;  3LKK A;  3QUR A;  4A7X A;  3U6U A;  3ZZI A;  2J4L A;  2OGX A;  3WWM A;  2J4K A;  4NDP B;  2WXB A;  4F6T A;  2J0W A;  4Q1T A;  3K52 A;  2VA1 A;  4A7W A;  3S6G A;  3T7B A;  3NWY A;  3QUO A;  3S6K A;  2HMF A;  4AXS A;  1Z9D A;  1E19 A;  2BNE A;  1OH9 A;  2OGX B;  2J0X A;  3D2P A;  4JZ9 A;  4F6T B;  3TVI A;  2IJ9 A;  2J5V A;  2J4J A;  3QVH A;  2BUF A;  2R8V A;  3AAW A;  1B7B A;  4USJ A;  2WE4 A;  2JI5 A;  3QUN A;  4NDQ A;  3AB2 A;  3L76 A;  4I49 A;  2BTY A;  4AB7 A;  1YBD A;  2BRI A;  2AP9 A;  1GSJ A;  2BMU A;  3LL9 A;  3D40 A;  3C20 A;  2JJX A;  2V4Y A;  1OHB A;  2CDQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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