4NGBA

Structure of human dicer platform-paz-connector helix cassette in complex with 12-mer sirna having uu-3' ends (2.25 angstrom resolution)
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
298
structure length
276
Chain Sequence
QPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELAASGFMLSLQMLELITRLHQYIFSHILRLEKPALAYCVLPLNVVSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/rna
molecule keywords Endoribonuclease Dicer
publication title A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
pubmed doi rcsb
source organism Homo sapiens
total genus 70
structure length 276
sequence length 298
ec nomenclature ec 3.1.26.3: Ribonuclease III.
pdb deposition date 2013-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02170 PAZ PAZ domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.260.10 Mainly Beta Beta Complex paz domain paz domain 4ngbA02
1R4KA 1T2RA 4NGGA 4Z4FA 2QVWA 4NH3A 5T7BA 2FFLA 4NH5A 4KREA 4NGCA 5JS1A 4Z4EA 4W5TA 3O3IX 4Z4IA 3QIRA 4NGBA 3MJ0A 4Z4GA 2L5DA 4W5OA 4NGDA 1T2SA 1VYNA 5JS2A 4Z4HA 1SI3A 3O7XA 4F3TA 1SI2A 4OLBA 4Z4CA 4W5NA 3O7VX 4NGFA 2L5CA 1R6ZA 5KI6A 4NH6A 2XFMA 4OLAA 4NHAA 4KRFA 4W5QA 4W5RA 3O6EX
chains in the Genus database with same CATH superfamily
1R4KA 3HM9A 1T2RA 2DB9A 3DLBA 4W5QA 4Z4FA 2QVWA 3DLHA 4NGGA 2FFLA 4NH3A 4NH5A 4KREA 4NGCA 5JS1A 3HVRA 4Z4EA 3HJFA 3HO1A 4W5TA 4L1UA 3O3IX 4Z4IA 3QIRA 4NGBA 3MJ0A 3U1UA 4Z4GA 3HK2A 2L5DA 4W5OA 4NGDA 1T2SA 1VYNA 5JS2A 3O6EX 3DA5A 1Z25A 4L1PA 3O7XA 4Z4HA 1SI3A 4F3TA 1SI2A 4OLBA 4Z4CA 1Z26A 1U04A 4W5NA 3F73A 3O7VX 1R6ZA 2L5CA 5KI6A 4NGFA 2XFMA 4NH6A 4NHAA 4OLAA 4KRFA 5T7BA 4W5RA 2BZEA
chains in the Genus database with same CATH topology
1R4KA 3HM9A 1T2RA 2DB9A 3DLBA 4W5QA 4Z4FA 2QVWA 3DLHA 4NGGA 2FFLA 4NH3A 4NH5A 4KREA 4NGCA 5JS1A 3HVRA 4Z4EA 3HJFA 3HO1A 4W5TA 4L1UA 3O3IX 4Z4IA 3QIRA 4NGBA 3MJ0A 3U1UA 4Z4GA 3HK2A 2L5DA 4W5OA 4NGDA 1T2SA 1VYNA 5JS2A 3O6EX 3DA5A 1Z25A 4L1PA 3O7XA 4Z4HA 1SI3A 4F3TA 1SI2A 4OLBA 4Z4CA 1Z26A 1U04A 4W5NA 3F73A 3O7VX 1R6ZA 2L5CA 5KI6A 4NGFA 2XFMA 4NH6A 4NHAA 4OLAA 4KRFA 5T7BA 4W5RA 2BZEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R4K A;  1T2R A;  4NGG A;  4Z4F A;  2QVW A;  4NH3 A;  5T7B A;  2FFL A;  4NH5 A;  4KRE A;  4NGC A;  5JS1 A;  4Z4E A;  4W5T A;  3O3I X;  4Z4I A;  3QIR A;  4NGB A;  3MJ0 A;  4Z4G A;  2L5D A;  4W5O A;  4NGD A;  1T2S A;  1VYN A;  5JS2 A;  4Z4H A;  1SI3 A;  3O7X A;  4F3T A;  1SI2 A;  4OLB A;  4Z4C A;  4W5N A;  3O7V X;  4NGF A;  2L5C A;  1R6Z A;  5KI6 A;  4NH6 A;  2XFM A;  4OLA A;  4NHA A;  4KRF A;  4W5Q A;  4W5R A;  3O6E X; 
#chains in the Genus database with same CATH topology
 1R4K A;  3HM9 A;  1T2R A;  2DB9 A;  3DLB A;  4W5Q A;  4Z4F A;  2QVW A;  3DLH A;  4NGG A;  2FFL A;  4NH3 A;  4NH5 A;  4KRE A;  4NGC A;  5JS1 A;  3HVR A;  4Z4E A;  3HJF A;  3HO1 A;  4W5T A;  4L1U A;  3O3I X;  4Z4I A;  3QIR A;  4NGB A;  3MJ0 A;  3U1U A;  4Z4G A;  3HK2 A;  2L5D A;  4W5O A;  4NGD A;  1T2S A;  1VYN A;  5JS2 A;  3O6E X;  3DA5 A;  1Z25 A;  4L1P A;  3O7X A;  4Z4H A;  1SI3 A;  4F3T A;  1SI2 A;  4OLB A;  4Z4C A;  1Z26 A;  1U04 A;  4W5N A;  3F73 A;  3O7V X;  1R6Z A;  2L5C A;  5KI6 A;  4NGF A;  2XFM A;  4NH6 A;  4NHA A;  4OLA A;  4KRF A;  5T7B A;  4W5R A;  2BZE A; 
#chains in the Genus database with same CATH homology
 1R4K A;  3HM9 A;  1T2R A;  2DB9 A;  3DLB A;  4W5Q A;  4Z4F A;  2QVW A;  3DLH A;  4NGG A;  2FFL A;  4NH3 A;  4NH5 A;  4KRE A;  4NGC A;  5JS1 A;  3HVR A;  4Z4E A;  3HJF A;  3HO1 A;  4W5T A;  4L1U A;  3O3I X;  4Z4I A;  3QIR A;  4NGB A;  3MJ0 A;  3U1U A;  4Z4G A;  3HK2 A;  2L5D A;  4W5O A;  4NGD A;  1T2S A;  1VYN A;  5JS2 A;  3O6E X;  3DA5 A;  1Z25 A;  4L1P A;  3O7X A;  4Z4H A;  1SI3 A;  4F3T A;  1SI2 A;  4OLB A;  4Z4C A;  1Z26 A;  1U04 A;  4W5N A;  3F73 A;  3O7V X;  1R6Z A;  2L5C A;  5KI6 A;  4NGF A;  2XFM A;  4NH6 A;  4NHA A;  4OLA A;  4KRF A;  5T7B A;  4W5R A;  2BZE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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