4NGDA

Structure of human dicer platform-paz-connector helix cassette in complex with 12-mer sirna having 5'-p and uu-3' ends (1.95 angstrom resolution)
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
298
structure length
280
Chain Sequence
QPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELAASGFMLSLQMLELITRLHQYIFSHILRLEKPALAYCVLPLNVVSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/rna
molecule keywords Endoribonuclease Dicer
publication title A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
pubmed doi rcsb
source organism Homo sapiens
total genus 69
structure length 280
sequence length 298
ec nomenclature ec 3.1.26.3: Ribonuclease III.
pdb deposition date 2013-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02170 PAZ PAZ domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.260.10 Mainly Beta Beta Complex paz domain paz domain 4ngdA02
4NGCA 2L5CA 4NH6A 1VYNA 3O3IX 3O7XA 4W5OA 4Z4IA 1R4KA 2QVWA 4OLAA 3MJ0A 4OLBA 1SI3A 4Z4EA 4NHAA 4W5TA 4NH5A 5JS1A 3O7VX 4F3TA 2XFMA 3QIRA 4Z4FA 4Z4GA 4NGDA 4KRFA 1SI2A 1T2RA 4W5QA 1R6ZA 2FFLA 4NGGA 4W5RA 4Z4CA 4NGFA 4NH3A 4Z4HA 2L5DA 4W5NA 5KI6A 4KREA 5T7BA 1T2SA 4NGBA 3O6EX 5JS2A
chains in the Genus database with same CATH superfamily
4NGCA 4L1PA 2L5CA 3HVRA 3HJFA 4NH6A 3DLBA 3HK2A 1VYNA 3O3IX 3O7XA 4W5OA 4Z4IA 1R4KA 2QVWA 4OLAA 2BZEA 3MJ0A 4OLBA 1Z25A 1SI3A 4Z4EA 4NHAA 4L1UA 4W5TA 4NH5A 5JS1A 3O7VX 1Z26A 4F3TA 3DLHA 2XFMA 3QIRA 4Z4FA 4Z4GA 4NGDA 4KRFA 1SI2A 1T2RA 1R6ZA 4W5QA 2FFLA 4NGGA 4W5RA 3U1UA 4Z4CA 4NGFA 3DA5A 4NH3A 3F73A 4Z4HA 2L5DA 3HO1A 4W5NA 3HM9A 5KI6A 4KREA 5T7BA 1T2SA 1U04A 4NGBA 3O6EX 5JS2A 2DB9A
chains in the Genus database with same CATH topology
4NGCA 4L1PA 2L5CA 3HVRA 3HJFA 4NH6A 3DLBA 3HK2A 1VYNA 3O3IX 3O7XA 4W5OA 4Z4IA 1R4KA 2QVWA 4OLAA 2BZEA 3MJ0A 4OLBA 1Z25A 1SI3A 4Z4EA 4NHAA 4L1UA 4W5TA 4NH5A 5JS1A 3O7VX 1Z26A 4F3TA 3DLHA 2XFMA 3QIRA 4Z4FA 4Z4GA 4NGDA 4KRFA 1SI2A 1T2RA 1R6ZA 4W5QA 2FFLA 4NGGA 4W5RA 3U1UA 4Z4CA 4NGFA 3DA5A 4NH3A 3F73A 4Z4HA 2L5DA 3HO1A 4W5NA 3HM9A 5KI6A 4KREA 5T7BA 1T2SA 1U04A 4NGBA 3O6EX 5JS2A 2DB9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NGC A;  2L5C A;  4NH6 A;  1VYN A;  3O3I X;  3O7X A;  4W5O A;  4Z4I A;  1R4K A;  2QVW A;  4OLA A;  3MJ0 A;  4OLB A;  1SI3 A;  4Z4E A;  4NHA A;  4W5T A;  4NH5 A;  5JS1 A;  3O7V X;  4F3T A;  2XFM A;  3QIR A;  4Z4F A;  4Z4G A;  4NGD A;  4KRF A;  1SI2 A;  1T2R A;  4W5Q A;  1R6Z A;  2FFL A;  4NGG A;  4W5R A;  4Z4C A;  4NGF A;  4NH3 A;  4Z4H A;  2L5D A;  4W5N A;  5KI6 A;  4KRE A;  5T7B A;  1T2S A;  4NGB A;  3O6E X;  5JS2 A; 
#chains in the Genus database with same CATH topology
 4NGC A;  4L1P A;  2L5C A;  3HVR A;  3HJF A;  4NH6 A;  3DLB A;  3HK2 A;  1VYN A;  3O3I X;  3O7X A;  4W5O A;  4Z4I A;  1R4K A;  2QVW A;  4OLA A;  2BZE A;  3MJ0 A;  4OLB A;  1Z25 A;  1SI3 A;  4Z4E A;  4NHA A;  4L1U A;  4W5T A;  4NH5 A;  5JS1 A;  3O7V X;  1Z26 A;  4F3T A;  3DLH A;  2XFM A;  3QIR A;  4Z4F A;  4Z4G A;  4NGD A;  4KRF A;  1SI2 A;  1T2R A;  1R6Z A;  4W5Q A;  2FFL A;  4NGG A;  4W5R A;  3U1U A;  4Z4C A;  4NGF A;  3DA5 A;  4NH3 A;  3F73 A;  4Z4H A;  2L5D A;  3HO1 A;  4W5N A;  3HM9 A;  5KI6 A;  4KRE A;  5T7B A;  1T2S A;  1U04 A;  4NGB A;  3O6E X;  5JS2 A;  2DB9 A; 
#chains in the Genus database with same CATH homology
 4NGC A;  4L1P A;  2L5C A;  3HVR A;  3HJF A;  4NH6 A;  3DLB A;  3HK2 A;  1VYN A;  3O3I X;  3O7X A;  4W5O A;  4Z4I A;  1R4K A;  2QVW A;  4OLA A;  2BZE A;  3MJ0 A;  4OLB A;  1Z25 A;  1SI3 A;  4Z4E A;  4NHA A;  4L1U A;  4W5T A;  4NH5 A;  5JS1 A;  3O7V X;  1Z26 A;  4F3T A;  3DLH A;  2XFM A;  3QIR A;  4Z4F A;  4Z4G A;  4NGD A;  4KRF A;  1SI2 A;  1T2R A;  1R6Z A;  4W5Q A;  2FFL A;  4NGG A;  4W5R A;  3U1U A;  4Z4C A;  4NGF A;  3DA5 A;  4NH3 A;  3F73 A;  4Z4H A;  2L5D A;  3HO1 A;  4W5N A;  3HM9 A;  5KI6 A;  4KRE A;  5T7B A;  1T2S A;  1U04 A;  4NGB A;  3O6E X;  5JS2 A;  2DB9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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