4NJ5A

Crystal structure of suvh9
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
500
structure length
482
Chain Sequence
PESERQFREHVRKTRMIYDSLRMFLMMEEAKRRARADGKAGKAGSMMRDCMLWMNRDKRIVGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTGSLSSNGEPIATSVIVSGGDVIMYTGQGGQDRLGRQAEHQRLEGGNLAMERSMYYGIEVRVIRGLKYENEVSSRVYVYDGLFRIVDSWFDVGKSGFGVFKYRLERIEGQAEMGSSVLKFARTLKTNPLSVRPRGYINFDISNGKENVPVYLFNDIDSDQEPLYYEYLAQTSFPPGLFGNASGCDCVNGCGSGCLCEAKNSGEIAYDYNGTLIRQKPLIHECGSACQCPPSCRNRVTQKGLRNRLEVFRSLETGWGVRSLDVLHAGAFICEYAGVALTREQANILTMNGDTLVYPARFSSARWEDWGDLSQVLADFERPSYPDIPPVDFAMDVSKMRNVACYISHSTDPNVIVQFVLHDHNSLMFPRVMLFAAENIPPMTELSLDYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Metal binding protein
molecule keywords Probable histone-lysine N-methyltransferase, H3 lysine-9 spe
total genus 148
structure length 482
sequence length 500
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2013-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF02182 SAD_SRA SAD/SRA domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.280.10 Mainly Beta Roll PUA domain-like SRA-YDG 4nj5A01
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 4nj5A02
2ZKFA 1XQHA 3CBMA 3CBOA 5EX0A 4E47A 3OS5A 5HI7A 4YNMA 4YPUA 4QEPA 5KJNA 5F59A 4NVQA 2QPWA 3TG5A 5KJKA 3DWHA 3MO2A 1N6CA 4Z4PA 4QEOA 5ARFA 3QWVA 5ARGA 5T0KA 3OOIA 3DALA 3M58A 3VV0A 5HQ8A 4PW7A 4J7IA 4I51A 2O8JA 4JLGA 1MUFA 3S7FA 4MI0A 2ZO1B 2ZO2B 5LSXA 3OPEA 3QWPA 2PB7A 5CCLA 3RU0A 4O6FA 5JINA 3SW9A 2R3AA 1MVHA 3F9WA 4PW5A 3EP0A 3OXGA 4H12A 4J7FA 4MI5A 3FPDA 1MT6A 3K5KA 5EX3A 3CBPA 4YPEA 5F5EA 4FMUA 4YPAA 5KJMA 3M55A 3F9ZA 1MVXA 4PW6A 1PEGA 3OLNA 3PDNA 4YNPA 4RZ0A 3F8JB 3TG4A 4JDSA 5T5GA 3DB5A 3RAYA 4J8OA 3S8PA 2F69A 5KJLA 3M54A 3IHXA 1O9SA 5JIYA 1ZKKA 5TH7A 2BQZA 5CPRB 2W5YA 3BI7A 3VUZA 4AU7A 5JHNA 5AYFA 2JV0A 3M57A 4BUPA 2ZKDA 3F9YA 1N3JA 3CLZA 4IJ8A 3KMTA 4WUYA 2ZKGA 3RQ4A 4YNDA 4C1QA 5JJ0A 3RIBA 2W5ZA 3KMJA 4IJDA 2ZO0B 3MO0A 3M53A 2IGQA 3OXFA 1H3IA 3QWWA 1ML9A 5F6LA 5LSZA 1N6AA 3SWCA 3FDEA 5F6KC 4QENA 2RFIA 3M56A 4O30A 4J83A 3S7JA 4NJ5A 4LDGA 5CCMA 5TTFA 3F9XA 3RJWA 3OXLA 5EG2A 2G46A 3HNAA 3MEKA 2ZKEA 3S7DA 3M5AA 3F8IA 5TEGA 5T0MA 3M59A 3S7BA 3BO5A 3N71A 3MO5A 3KMAA
chains in the Genus database with same CATH superfamily
2ZKFA 1XQHA 3CBMA 3CBOA 5EX0A 4E47A 3OS5A 5HI7A 4YNMA 4YPUA 4QEPA 5KJNA 5F59A 4NVQA 2QPWA 3TG5A 5KJKA 3Q0FA 3DWHA 3MO2A 1N6CA 4Z4PA 4QEOA 5ARFA 3QWVA 3Q0CA 3Q0BX 5ARGA 5T0KA 3OOIA 3DALA 3M58A 3VV0A 5HQ8A 4PW7A 4J7IA 4I51A 2O8JA 4JLGA 1MUFA 3S7FA 4MI0A 2ZO1B 2ZO2B 5LSXA 3OPEA 3QWPA 2PB7A 5CCLA 3RU0A 4O6FA 5JINA 3SW9A 2R3AA 1MVHA 3F9WA 4F0QA 4PW5A 3EP0A 3OXGA 4H12A 4J7FA 4MI5A 3FPDA 1MT6A 3K5KA 5EX3A 3CBPA 4YPEA 5F5EA 4FMUA 4YPAA 5KJMA 3M55A 3F9ZA 1MVXA 4YGIA 4PW6A 1PEGA 3OLNA 3PDNA 4YNPA 4RZ0A 3F8JB 3TG4A 4JDSA 5T5GA 3DB5A 3RAYA 4RZLA 4J8OA 3S8PA 2F69A 5KJLA 3M54A 3IHXA 1O9SA 5JIYA 1ZKKA 5TH7A 2BQZA 5CPRB 2W5YA 3BI7A 3VUZA 4AU7A 5JHNA 5AYFA 2JV0A 3M57A 4BUPA 2ZKDA 3F9YA 1N3JA 3CLZA 4IJ8A 3KMTA 4WUYA 2ZKGA 3RQ4A 4YNDA 4C1QA 5JJ0A 3RIBA 2W5ZA 3KMJA 4IJDA 2ZO0B 4R28A 3M53A 3MO0A 2IGQA 3OXFA 1H3IA 3QWWA 1ML9A 5F6LA 4OC8A 5LSZA 1N6AA 3SWCA 3FDEA 5F6KC 4QENA 2RFIA 3M56A 4O30A 4J83A 3S7JA 4NJ5A 4LDGA 5CCMA 5TTFA 3F9XA 3RJWA 3OXLA 5EG2A 4F0PA 2G46A 3HNAA 3MEKA 2ZKEA 3S7DA 3M5AA 3F8IA 3Q0DA 5TEGA 5T0MA 3M59A 3S7BA 3BO5A 3N71A 3MO5A 3KMAA
chains in the Genus database with same CATH topology
2ZKFA 1XQHA 3CBMA 3CBOA 5EX0A 4E47A 3OS5A 5HI7A 4YNMA 4YPUA 4QEPA 5KJNA 5F59A 4NVQA 2QPWA 3TG5A 5KJKA 3DWHA 3MO2A 1N6CA 4Z4PA 4QEOA 5ARFA 3QWVA 5ARGA 5T0KA 3OOIA 3DALA 3M58A 3VV0A 5HQ8A 4PW7A 4J7IA 4I51A 2O8JA 4JLGA 1MUFA 3S7FA 4MI0A 2ZO1B 2ZO2B 5LSXA 3OPEA 3QWPA 2PB7A 5CCLA 3RU0A 4O6FA 5JINA 3SW9A 2R3AA 1MVHA 3F9WA 4PW5A 3EP0A 3OXGA 4H12A 4J7FA 4MI5A 3FPDA 1MT6A 3K5KA 5EX3A 3CBPA 4YPEA 5F5EA 4FMUA 4YPAA 5KJMA 3M55A 3F9ZA 1MVXA 4PW6A 1PEGA 3OLNA 3PDNA 4YNPA 4RZ0A 3F8JB 3TG4A 4JDSA 5T5GA 3DB5A 3RAYA 4J8OA 3S8PA 2F69A 5KJLA 3M54A 3IHXA 1O9SA 5JIYA 1ZKKA 5TH7A 2BQZA 5CPRB 2W5YA 3BI7A 3VUZA 4AU7A 5JHNA 5AYFA 2JV0A 3M57A 4BUPA 2ZKDA 3F9YA 1N3JA 3CLZA 4IJ8A 3KMTA 4WUYA 2ZKGA 3RQ4A 4YNDA 4C1QA 5JJ0A 3RIBA 2W5ZA 3KMJA 4IJDA 2ZO0B 3MO0A 3M53A 2IGQA 3OXFA 1H3IA 3QWWA 1ML9A 5F6LA 5LSZA 1N6AA 3SWCA 3FDEA 5F6KC 4QENA 2RFIA 3M56A 4O30A 4J83A 3S7JA 4NJ5A 4LDGA 5CCMA 5TTFA 3F9XA 3RJWA 3OXLA 5EG2A 2G46A 3HNAA 3MEKA 2ZKEA 3S7DA 3M5AA 3F8IA 5TEGA 5T0MA 3M59A 3S7BA 3BO5A 3N71A 3MO5A 3KMAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZKF A;  1XQH A;  3CBM A;  3CBO A;  5EX0 A;  4E47 A;  3OS5 A;  5HI7 A;  4YNM A;  4YPU A;  4QEP A;  5KJN A;  5F59 A;  4NVQ A;  2QPW A;  3TG5 A;  5KJK A;  3DWH A;  3MO2 A;  1N6C A;  4Z4P A;  4QEO A;  5ARF A;  3QWV A;  5ARG A;  5T0K A;  3OOI A;  3DAL A;  3M58 A;  3VV0 A;  5HQ8 A;  4PW7 A;  4J7I A;  4I51 A;  2O8J A;  4JLG A;  1MUF A;  3S7F A;  4MI0 A;  2ZO1 B;  2ZO2 B;  5LSX A;  3OPE A;  3QWP A;  2PB7 A;  5CCL A;  3RU0 A;  4O6F A;  5JIN A;  3SW9 A;  2R3A A;  1MVH A;  3F9W A;  4PW5 A;  3EP0 A;  3OXG A;  4H12 A;  4J7F A;  4MI5 A;  3FPD A;  1MT6 A;  3K5K A;  5EX3 A;  3CBP A;  4YPE A;  5F5E A;  4FMU A;  4YPA A;  5KJM A;  3M55 A;  3F9Z A;  1MVX A;  4PW6 A;  1PEG A;  3OLN A;  3PDN A;  4YNP A;  4RZ0 A;  3F8J B;  3TG4 A;  4JDS A;  5T5G A;  3DB5 A;  3RAY A;  4J8O A;  3S8P A;  2F69 A;  5KJL A;  3M54 A;  3IHX A;  1O9S A;  5JIY A;  1ZKK A;  5TH7 A;  2BQZ A;  5CPR B;  2W5Y A;  3BI7 A;  3VUZ A;  4AU7 A;  5JHN A;  5AYF A;  2JV0 A;  3M57 A;  4BUP A;  2ZKD A;  3F9Y A;  1N3J A;  3CLZ A;  4IJ8 A;  3KMT A;  4WUY A;  2ZKG A;  3RQ4 A;  4YND A;  4C1Q A;  5JJ0 A;  3RIB A;  2W5Z A;  3KMJ A;  4IJD A;  2ZO0 B;  3MO0 A;  3M53 A;  2IGQ A;  3OXF A;  1H3I A;  3QWW A;  1ML9 A;  5F6L A;  5LSZ A;  1N6A A;  3SWC A;  3FDE A;  5F6K C;  4QEN A;  2RFI A;  3M56 A;  4O30 A;  4J83 A;  3S7J A;  4NJ5 A;  4LDG A;  5CCM A;  5TTF A;  3F9X A;  3RJW A;  3OXL A;  5EG2 A;  2G46 A;  3HNA A;  3MEK A;  2ZKE A;  3S7D A;  3M5A A;  3F8I A;  5TEG A;  5T0M A;  3M59 A;  3S7B A;  3BO5 A;  3N71 A;  3MO5 A;  3KMA A; 
#chains in the Genus database with same CATH topology
 2ZKF A;  1XQH A;  3CBM A;  3CBO A;  5EX0 A;  4E47 A;  3OS5 A;  5HI7 A;  4YNM A;  4YPU A;  4QEP A;  5KJN A;  5F59 A;  4NVQ A;  2QPW A;  3TG5 A;  5KJK A;  3Q0F A;  3DWH A;  3MO2 A;  1N6C A;  4Z4P A;  4QEO A;  5ARF A;  3QWV A;  3Q0C A;  3Q0B X;  5ARG A;  5T0K A;  3OOI A;  3DAL A;  3M58 A;  3VV0 A;  5HQ8 A;  4PW7 A;  4J7I A;  4I51 A;  2O8J A;  4JLG A;  1MUF A;  3S7F A;  4MI0 A;  2ZO1 B;  2ZO2 B;  5LSX A;  3OPE A;  3QWP A;  2PB7 A;  5CCL A;  3RU0 A;  4O6F A;  5JIN A;  3SW9 A;  2R3A A;  1MVH A;  3F9W A;  4F0Q A;  4PW5 A;  3EP0 A;  3OXG A;  4H12 A;  4J7F A;  4MI5 A;  3FPD A;  1MT6 A;  3K5K A;  5EX3 A;  3CBP A;  4YPE A;  5F5E A;  4FMU A;  4YPA A;  5KJM A;  3M55 A;  3F9Z A;  1MVX A;  4YGI A;  4PW6 A;  1PEG A;  3OLN A;  3PDN A;  4YNP A;  4RZ0 A;  3F8J B;  3TG4 A;  4JDS A;  5T5G A;  3DB5 A;  3RAY A;  4RZL A;  4J8O A;  3S8P A;  2F69 A;  5KJL A;  3M54 A;  3IHX A;  1O9S A;  5JIY A;  1ZKK A;  5TH7 A;  2BQZ A;  5CPR B;  2W5Y A;  3BI7 A;  3VUZ A;  4AU7 A;  5JHN A;  5AYF A;  2JV0 A;  3M57 A;  4BUP A;  2ZKD A;  3F9Y A;  1N3J A;  3CLZ A;  4IJ8 A;  3KMT A;  4WUY A;  2ZKG A;  3RQ4 A;  4YND A;  4C1Q A;  5JJ0 A;  3RIB A;  2W5Z A;  3KMJ A;  4IJD A;  2ZO0 B;  4R28 A;  3M53 A;  3MO0 A;  2IGQ A;  3OXF A;  1H3I A;  3QWW A;  1ML9 A;  5F6L A;  4OC8 A;  5LSZ A;  1N6A A;  3SWC A;  3FDE A;  5F6K C;  4QEN A;  2RFI A;  3M56 A;  4O30 A;  4J83 A;  3S7J A;  4NJ5 A;  4LDG A;  5CCM A;  5TTF A;  3F9X A;  3RJW A;  3OXL A;  5EG2 A;  4F0P A;  2G46 A;  3HNA A;  3MEK A;  2ZKE A;  3S7D A;  3M5A A;  3F8I A;  3Q0D A;  5TEG A;  5T0M A;  3M59 A;  3S7B A;  3BO5 A;  3N71 A;  3MO5 A;  3KMA A; 
#chains in the Genus database with same CATH homology
 2ZKF A;  1XQH A;  3CBM A;  3CBO A;  5EX0 A;  4E47 A;  3OS5 A;  5HI7 A;  4YNM A;  4YPU A;  4QEP A;  5KJN A;  5F59 A;  4NVQ A;  2QPW A;  3TG5 A;  5KJK A;  3DWH A;  3MO2 A;  1N6C A;  4Z4P A;  4QEO A;  5ARF A;  3QWV A;  5ARG A;  5T0K A;  3OOI A;  3DAL A;  3M58 A;  3VV0 A;  5HQ8 A;  4PW7 A;  4J7I A;  4I51 A;  2O8J A;  4JLG A;  1MUF A;  3S7F A;  4MI0 A;  2ZO1 B;  2ZO2 B;  5LSX A;  3OPE A;  3QWP A;  2PB7 A;  5CCL A;  3RU0 A;  4O6F A;  5JIN A;  3SW9 A;  2R3A A;  1MVH A;  3F9W A;  4PW5 A;  3EP0 A;  3OXG A;  4H12 A;  4J7F A;  4MI5 A;  3FPD A;  1MT6 A;  3K5K A;  5EX3 A;  3CBP A;  4YPE A;  5F5E A;  4FMU A;  4YPA A;  5KJM A;  3M55 A;  3F9Z A;  1MVX A;  4PW6 A;  1PEG A;  3OLN A;  3PDN A;  4YNP A;  4RZ0 A;  3F8J B;  3TG4 A;  4JDS A;  5T5G A;  3DB5 A;  3RAY A;  4J8O A;  3S8P A;  2F69 A;  5KJL A;  3M54 A;  3IHX A;  1O9S A;  5JIY A;  1ZKK A;  5TH7 A;  2BQZ A;  5CPR B;  2W5Y A;  3BI7 A;  3VUZ A;  4AU7 A;  5JHN A;  5AYF A;  2JV0 A;  3M57 A;  4BUP A;  2ZKD A;  3F9Y A;  1N3J A;  3CLZ A;  4IJ8 A;  3KMT A;  4WUY A;  2ZKG A;  3RQ4 A;  4YND A;  4C1Q A;  5JJ0 A;  3RIB A;  2W5Z A;  3KMJ A;  4IJD A;  2ZO0 B;  3MO0 A;  3M53 A;  2IGQ A;  3OXF A;  1H3I A;  3QWW A;  1ML9 A;  5F6L A;  5LSZ A;  1N6A A;  3SWC A;  3FDE A;  5F6K C;  4QEN A;  2RFI A;  3M56 A;  4O30 A;  4J83 A;  3S7J A;  4NJ5 A;  4LDG A;  5CCM A;  5TTF A;  3F9X A;  3RJW A;  3OXL A;  5EG2 A;  2G46 A;  3HNA A;  3MEK A;  2ZKE A;  3S7D A;  3M5A A;  3F8I A;  5TEG A;  5T0M A;  3M59 A;  3S7B A;  3BO5 A;  3N71 A;  3MO5 A;  3KMA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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